RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 KRTAP4-5Q9BYR2 181 aa7.03□□□□□ -1.28
AP003559.1-201ENST00000540906 CYSTM1Q9H1C7 97 aa7.03□□□□□ -1.28
AP003559.1-201ENST00000540906 Q8N1X5 172 aa7.02□□□□□ -1.29
AP003559.1-201ENST00000540906 OCR1Q9BZK8 76 aa7.02□□□□□ -1.29
AP003559.1-201ENST00000540906 ASB16-AS1Q495Z4 193 aa7.01□□□□□ -1.29
AP003559.1-201ENST00000540906 C1orf195Q5TG92 126 aa7.01□□□□□ -1.29
AP003559.1-201ENST00000540906 TNXBP22105 4242 aa7.01□□□□□ -1.29
AP003559.1-201ENST00000540906 FAT3Q8TDW7 4589 aa7.01□□□□□ -1.29
AP003559.1-201ENST00000540906 TRAV7A0A075B6U4 112 aa7.01□□□□□ -1.29
AP003559.1-201ENST00000540906 LCE2CQ5TA81 110 aa7.01□□□□□ -1.29
AP003559.1-201ENST00000540906 SVIPQ8NHG7 77 aa7.01□□□□□ -1.29
AP003559.1-201ENST00000540906 IGHV6-1A0A0B4J1U7 121 aa7□□□□□ -1.29
AP003559.1-201ENST00000540906 A0A1B0GVX0 72 aa7□□□□□ -1.29
AP003559.1-201ENST00000540906 UQCRQO14949 82 aa7□□□□□ -1.29
AP003559.1-201ENST00000540906 Q5XG85 94 aa6.99□□□□□ -1.29
AP003559.1-201ENST00000540906 LINC00304Q8N9R0 145 aa6.99□□□□□ -1.29
AP003559.1-201ENST00000540906 CASC2Q6XLA1 102 aa6.98□□□□□ -1.29
AP003559.1-201ENST00000540906 C8orf17Q9NRJ1 99 aa6.98□□□□□ -1.29
AP003559.1-201ENST00000540906 NDUFB1O75438 58 aa6.97□□□□□ -1.29
AP003559.1-201ENST00000540906 PCLOQ9Y6V0 5065 aa6.95□□□□□ -1.3
AP003559.1-201ENST00000540906 SPINK1P00995 79 aa6.95□□□□□ -1.3
AP003559.1-201ENST00000540906 C4orf48Q5BLP8 95 aa6.95□□□□□ -1.3
AP003559.1-201ENST00000540906 C20orf197Q8N268 126 aa6.94□□□□□ -1.3
AP003559.1-201ENST00000540906 SMIM20Q8N5G0 67 aa6.94□□□□□ -1.3
AP003559.1-201ENST00000540906 hDV103S1A0JD37 113 aa6.94□□□□□ -1.3
AP003559.1-201ENST00000540906 LIMD2Q9BT23 127 aa6.94□□□□□ -1.3
AP003559.1-201ENST00000540906 MYCBP2O75592 4640 aa6.92□□□□□ -1.3
AP003559.1-201ENST00000540906 SNURFQ9Y675 71 aa6.92□□□□□ -1.3
AP003559.1-201ENST00000540906 FLG2Q5D862 2391 aaPredicted RBP6.9□□□□□ -1.3
AP003559.1-201ENST00000540906 KRTAP10-8P60410 259 aa6.9□□□□□ -1.3
AP003559.1-201ENST00000540906 SPAG11AQ6PDA7 123 aa6.9□□□□□ -1.31
AP003559.1-201ENST00000540906 RPS29P62273 56 aaKnown RBP6.88□□□□□ -1.31
AP003559.1-201ENST00000540906 TMEM254Q8TBM7 123 aa6.88□□□□□ -1.31
AP003559.1-201ENST00000540906 A0A0U1RQV1 116 aa6.87□□□□□ -1.31
AP003559.1-201ENST00000540906 RETNLBQ9BQ08 111 aa6.87□□□□□ -1.31
AP003559.1-201ENST00000540906 MRPL34Q9BQ48 92 aaKnown RBP6.87□□□□□ -1.31
AP003559.1-201ENST00000540906 KRTAP16-1A8MUX0 517 aa6.86□□□□□ -1.31
AP003559.1-201ENST00000540906 KLKP1Q107X0 134 aa6.85□□□□□ -1.31
AP003559.1-201ENST00000540906 C8orf87E5RJ46 101 aa6.84□□□□□ -1.31
AP003559.1-201ENST00000540906 MT1HL1P0DM35 61 aa6.84□□□□□ -1.31
AP003559.1-201ENST00000540906 LINC00313P59037 77 aa6.84□□□□□ -1.31
AP003559.1-201ENST00000540906 H7BZZ5 65 aa6.83□□□□□ -1.32
AP003559.1-201ENST00000540906 NDUFS5O43920 106 aa6.83□□□□□ -1.32
AP003559.1-201ENST00000540906 ZCCHC13Q8WW36 166 aaKnown RBP6.83□□□□□ -1.32
AP003559.1-201ENST00000540906 LORP23490 312 aaPredicted RBP6.82□□□□□ -1.32
AP003559.1-201ENST00000540906 H0Y9P7 68 aa6.81□□□□□ -1.32
AP003559.1-201ENST00000540906 C5orf47Q569G3 176 aa6.8□□□□□ -1.32
AP003559.1-201ENST00000540906 Q5W150 140 aa6.8□□□□□ -1.32
AP003559.1-201ENST00000540906 LINC00208Q96KT6 92 aa6.78□□□□□ -1.32
AP003559.1-201ENST00000540906 KRTAP13-3Q3SY46 172 aa6.78□□□□□ -1.32
AP003559.1-201ENST00000540906 Q8N9P0 234 aaPredicted RBP6.78□□□□□ -1.32
AP003559.1-201ENST00000540906 TRAV22A0A0B4J277 110 aa6.77□□□□□ -1.33
AP003559.1-201ENST00000540906 C9orf92A6NGG3 77 aa6.76□□□□□ -1.33
AP003559.1-201ENST00000540906 TP53AIP1Q9HCN2 124 aa6.76□□□□□ -1.33
AP003559.1-201ENST00000540906 DMBT1Q9UGM3 2413 aaPredicted RBP6.75□□□□□ -1.33
AP003559.1-201ENST00000540906 MP68P56378 58 aa6.75□□□□□ -1.33
AP003559.1-201ENST00000540906 TMEM258P61165 79 aa6.73□□□□□ -1.33
AP003559.1-201ENST00000540906 C1orf64Q8NEQ6 169 aa6.73□□□□□ -1.33
AP003559.1-201ENST00000540906 NDUFC1O43677 76 aa6.7□□□□□ -1.34
AP003559.1-201ENST00000540906 FAM236DA0A1B0GTK5 79 aa6.69□□□□□ -1.34
AP003559.1-201ENST00000540906 OXTP01178 125 aa6.69□□□□□ -1.34
AP003559.1-201ENST00000540906 FAM236CP0DP71 79 aa6.69□□□□□ -1.34
AP003559.1-201ENST00000540906 HERC1Q15751 4861 aa6.69□□□□□ -1.34
AP003559.1-201ENST00000540906 H3BPC8 53 aa6.69□□□□□ -1.34
AP003559.1-201ENST00000540906 PCOTHQ58A44 107 aa6.66□□□□□ -1.34
AP003559.1-201ENST00000540906 PRR4Q16378 134 aa6.66□□□□□ -1.34
AP003559.1-201ENST00000540906 A8MUU9 505 aa6.64□□□□□ -1.35
AP003559.1-201ENST00000540906 C20orf166-AS1Q96NR2 134 aa6.64□□□□□ -1.35
AP003559.1-201ENST00000540906 IGLV7-46A0A075B6I9 117 aa6.62□□□□□ -1.35
AP003559.1-201ENST00000540906 CYP4F30PQ9H0H9 118 aa6.62□□□□□ -1.35
AP003559.1-201ENST00000540906 LOC101927531A0A1B0GV80 90 aa6.61□□□□□ -1.35
AP003559.1-201ENST00000540906 IGKV2-30P06310 120 aa6.61□□□□□ -1.35
AP003559.1-201ENST00000540906 FP248Q71RG6 208 aaPredicted RBP6.61□□□□□ -1.35
AP003559.1-201ENST00000540906 IGKV2D-30A0A075B6S6 120 aa6.57□□□□□ -1.36
AP003559.1-201ENST00000540906 ATP5EP56381 51 aaPredicted RBP6.56□□□□□ -1.36
AP003559.1-201ENST00000540906 XP32Q5T750 250 aa6.56□□□□□ -1.36
AP003559.1-201ENST00000540906 LPAP08519 4548 aa6.56□□□□□ -1.36
AP003559.1-201ENST00000540906 Q75L30 129 aa6.55□□□□□ -1.36
AP003559.1-201ENST00000540906 SPANXA2-OT1Q8N9U9 137 aa6.55□□□□□ -1.36
AP003559.1-201ENST00000540906 HRES1P13985 223 aa6.54□□□□□ -1.36
AP003559.1-201ENST00000540906 SERP1Q9Y6X1 66 aa6.54□□□□□ -1.36
AP003559.1-201ENST00000540906 RPS28P62857 69 aaKnown RBP6.53□□□□□ -1.36
AP003559.1-201ENST00000540906 LOC100996750A0A140TA64 210 aa6.51□□□□□ -1.37
AP003559.1-201ENST00000540906 KRTAP4-6Q9BYQ5 205 aa6.51□□□□□ -1.37
AP003559.1-201ENST00000540906 RPL37P61927 97 aaKnown RBP6.5□□□□□ -1.37
AP003559.1-201ENST00000540906 HMCN2Q8NDA2 5059 aa6.5□□□□□ -1.37
AP003559.1-201ENST00000540906 LRP2P98164 4655 aa6.5□□□□□ -1.37
AP003559.1-201ENST00000540906 C7orf65Q6ZTY9 151 aa6.48□□□□□ -1.37
AP003559.1-201ENST00000540906 TPRXLQ17RH7 258 aa6.46□□□□□ -1.38
AP003559.1-201ENST00000540906 SPINK7P58062 85 aa6.45□□□□□ -1.38
AP003559.1-201ENST00000540906 ATP11AUNQ6ZP68 121 aa6.43□□□□□ -1.38
AP003559.1-201ENST00000540906 COA5Q86WW8 74 aa6.43□□□□□ -1.38
AP003559.1-201ENST00000540906 C4orf26Q17RF5 130 aa6.41□□□□□ -1.38
AP003559.1-201ENST00000540906 DMAC1Q96GE9 116 aa6.41□□□□□ -1.38
AP003559.1-201ENST00000540906 KRTAP3-1Q9BYR8 98 aa6.39□□□□□ -1.39
AP003559.1-201ENST00000540906 SMIM26A0A096LP01 95 aa6.36□□□□□ -1.39
AP003559.1-201ENST00000540906 UBR4Q5T4S7 5183 aa6.35□□□□□ -1.39
AP003559.1-201ENST00000540906 ACYP2P14621 99 aa6.33□□□□□ -1.4
AP003559.1-201ENST00000540906 MPLKIPQ8TAP9 179 aa6.33□□□□□ -1.4
AP003559.1-201ENST00000540906 MUC17Q685J3 4493 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms