RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 C20orf166-AS1Q96NR2 134 aa6.07□□□□□ -1.44
RTN3-209ENST00000538995 FSIP2Q5CZC0 6907 aa6.05□□□□□ -1.44
RTN3-209ENST00000538995 A8MUU9 505 aa6.05□□□□□ -1.44
RTN3-209ENST00000538995 COX6B2Q6YFQ2 88 aa6.05□□□□□ -1.44
RTN3-209ENST00000538995 SIGMAR1Q99720 223 aa6.05□□□□□ -1.44
RTN3-209ENST00000538995 FLGP20930 4061 aaPredicted RBP6.04□□□□□ -1.44
RTN3-209ENST00000538995 CCKP06307 115 aa6.04□□□□□ -1.44
RTN3-209ENST00000538995 SCGB1C2P0DMR2 95 aa6.04□□□□□ -1.44
RTN3-209ENST00000538995 BATFQ16520 125 aa6.02□□□□□ -1.45
RTN3-209ENST00000538995 IGKV4-1P06312 121 aa6.01□□□□□ -1.45
RTN3-209ENST00000538995 DSCR10P59022 87 aa6.01□□□□□ -1.45
RTN3-209ENST00000538995 RBM3P98179 157 aaKnown RBP6.01□□□□□ -1.45
RTN3-209ENST00000538995 LINC00472Q9H8W2 130 aa6.01□□□□□ -1.45
RTN3-209ENST00000538995 LINC00313P59037 77 aa6□□□□□ -1.45
RTN3-209ENST00000538995 DSCR8Q96T75 97 aa6□□□□□ -1.45
RTN3-209ENST00000538995 GTF2H5Q6ZYL4 71 aa5.99□□□□□ -1.45
RTN3-209ENST00000538995 M0R2T5 61 aa5.98□□□□□ -1.45
RTN3-209ENST00000538995 KRTAP10-6P60371 365 aaPredicted RBP5.98□□□□□ -1.45
RTN3-209ENST00000538995 KRTAP4-9Q9BYQ8 210 aa5.98□□□□□ -1.45
RTN3-209ENST00000538995 KRTAP16-1A8MUX0 517 aa5.97□□□□□ -1.45
RTN3-209ENST00000538995 J3QR89 54 aa5.97□□□□□ -1.45
RTN3-209ENST00000538995 BAALC-AS2P0C853 105 aa5.97□□□□□ -1.45
RTN3-209ENST00000538995 ATXN8Q156A1 80 aa5.96□□□□□ -1.46
RTN3-209ENST00000538995 C9JAW5 83 aa5.95□□□□□ -1.46
RTN3-209ENST00000538995 TRBV20-1A0A075B6N2 111 aa5.94□□□□□ -1.46
RTN3-209ENST00000538995 C8orf87E5RJ46 101 aa5.94□□□□□ -1.46
RTN3-209ENST00000538995 DEFB116Q30KQ4 102 aa5.94□□□□□ -1.46
RTN3-209ENST00000538995 IGHV6-1A0A0B4J1U7 121 aa5.93□□□□□ -1.46
RTN3-209ENST00000538995 A0A1B0GW54 56 aa5.93□□□□□ -1.46
RTN3-209ENST00000538995 JMJD7-PLA2G4BH0Y9G9 81 aa5.93□□□□□ -1.46
RTN3-209ENST00000538995 J3KT08 172 aa5.93□□□□□ -1.46
RTN3-209ENST00000538995 LYRM7Q5U5X0 104 aa5.93□□□□□ -1.46
RTN3-209ENST00000538995 CRCT1Q9UGL9 99 aa5.93□□□□□ -1.46
RTN3-209ENST00000538995 A0A1B0GVX0 72 aa5.92□□□□□ -1.46
RTN3-209ENST00000538995 TAX1BP3O14907 124 aa5.92□□□□□ -1.46
RTN3-209ENST00000538995 Q6ZQT0 140 aa5.92□□□□□ -1.46
RTN3-209ENST00000538995 NOTCH2NLQ7Z3S9 236 aa5.92□□□□□ -1.46
RTN3-209ENST00000538995 KRTAP4-2Q9BYR5 136 aa5.92□□□□□ -1.46
RTN3-209ENST00000538995 LOC110117498A0A087WWA1 95 aa5.91□□□□□ -1.46
RTN3-209ENST00000538995 PDE6GP18545 87 aa5.91□□□□□ -1.46
RTN3-209ENST00000538995 NAA38Q9BRA0 125 aaKnown RBP5.91□□□□□ -1.46
RTN3-209ENST00000538995 K7EP34 96 aa5.87□□□□□ -1.47
RTN3-209ENST00000538995 NDUFB1O75438 58 aa5.87□□□□□ -1.47
RTN3-209ENST00000538995 C5orf47Q569G3 176 aa5.87□□□□□ -1.47
RTN3-209ENST00000538995 C9orf118A6NHY6 69 aa5.85□□□□□ -1.47
RTN3-209ENST00000538995 H3BS24 57 aa5.85□□□□□ -1.47
RTN3-209ENST00000538995 MPLKIPQ8TAP9 179 aa5.85□□□□□ -1.47
RTN3-209ENST00000538995 C14orf132Q9NPU4 83 aa5.85□□□□□ -1.47
RTN3-209ENST00000538995 A8MWP4 228 aa5.84□□□□□ -1.47
RTN3-209ENST00000538995 RBM12B-AS1Q9P1G2 102 aa5.84□□□□□ -1.47
RTN3-209ENST00000538995 HRES1P13985 223 aa5.83□□□□□ -1.48
RTN3-209ENST00000538995 ZCCHC13Q8WW36 166 aaKnown RBP5.83□□□□□ -1.48
RTN3-209ENST00000538995 FAM236DA0A1B0GTK5 79 aa5.82□□□□□ -1.48
RTN3-209ENST00000538995 F8W1H4 67 aa5.82□□□□□ -1.48
RTN3-209ENST00000538995 H3BT86 120 aa5.82□□□□□ -1.48
RTN3-209ENST00000538995 FAM236CP0DP71 79 aa5.82□□□□□ -1.48
RTN3-209ENST00000538995 Q8N9P0 234 aaPredicted RBP5.82□□□□□ -1.48
RTN3-209ENST00000538995 C8orf17Q9NRJ1 99 aa5.81□□□□□ -1.48
RTN3-209ENST00000538995 IGKV3D-7A0A0C4DH55 119 aa5.8□□□□□ -1.48
RTN3-209ENST00000538995 A0A1W2PPM0 123 aa5.79□□□□□ -1.48
RTN3-209ENST00000538995 NREPQ16612 68 aa5.79□□□□□ -1.48
RTN3-209ENST00000538995 PRR15Q8IV56 129 aa5.78□□□□□ -1.48
RTN3-209ENST00000538995 Q6ZVQ6 151 aa5.77□□□□□ -1.49
RTN3-209ENST00000538995 ANAPC13Q9BS18 74 aa5.77□□□□□ -1.49
RTN3-209ENST00000538995 KRTAP9-8Q9BYQ0 159 aa5.77□□□□□ -1.49
RTN3-209ENST00000538995 SPCS1Q9Y6A9 102 aa5.77□□□□□ -1.49
RTN3-209ENST00000538995 SPINK7P58062 85 aa5.76□□□□□ -1.49
RTN3-209ENST00000538995 SMIM20Q8N5G0 67 aa5.76□□□□□ -1.49
RTN3-209ENST00000538995 LCE4AQ5TA78 99 aa5.74□□□□□ -1.49
RTN3-209ENST00000538995 KRTAP4-11Q9BYQ6 195 aa5.74□□□□□ -1.49
RTN3-209ENST00000538995 MMP24-AS1A0A0U1RRL7 71 aa5.73□□□□□ -1.49
RTN3-209ENST00000538995 TMEM254Q8TBM7 123 aa5.73□□□□□ -1.49
RTN3-209ENST00000538995 MRPL34Q9BQ48 92 aaKnown RBP5.72□□□□□ -1.49
RTN3-209ENST00000538995 K7EQZ3 153 aa5.7□□□□□ -1.5
RTN3-209ENST00000538995 RPS28P62857 69 aaKnown RBP5.7□□□□□ -1.5
RTN3-209ENST00000538995 hDV103S1A0JD37 113 aa5.69□□□□□ -1.5
RTN3-209ENST00000538995 BPY2O14599 106 aa5.69□□□□□ -1.5
RTN3-209ENST00000538995 MT2AP02795 61 aa5.69□□□□□ -1.5
RTN3-209ENST00000538995 WFDC13Q8IUB5 93 aa5.68□□□□□ -1.5
RTN3-209ENST00000538995 USH2AO75445 5202 aa5.67□□□□□ -1.5
RTN3-209ENST00000538995 SSPOA2VEC9 5147 aa5.67□□□□□ -1.5
RTN3-209ENST00000538995 NDUFS5O43920 106 aa5.64□□□□□ -1.51
RTN3-209ENST00000538995 MT1FP04733 61 aa5.64□□□□□ -1.51
RTN3-209ENST00000538995 MT-ATP8P03928 68 aa5.63□□□□□ -1.51
RTN3-209ENST00000538995 ETDBQ3ZM63 59 aa5.62□□□□□ -1.51
RTN3-209ENST00000538995 PRO0461Q9UI25 63 aa5.62□□□□□ -1.51
RTN3-209ENST00000538995 KRTAP10-10P60014 251 aa5.61□□□□□ -1.51
RTN3-209ENST00000538995 CASC2Q6XLA1 102 aa5.61□□□□□ -1.51
RTN3-209ENST00000538995 Q8N9L7 120 aa5.6□□□□□ -1.51
RTN3-209ENST00000538995 UBL5Q9BZL1 73 aa5.6□□□□□ -1.51
RTN3-209ENST00000538995 C7orf65Q6ZTY9 151 aa5.59□□□□□ -1.51
RTN3-209ENST00000538995 KRTAP9-3Q9BYQ3 159 aa5.59□□□□□ -1.51
RTN3-209ENST00000538995 CCDC179H3BU77 68 aa5.58□□□□□ -1.52
RTN3-209ENST00000538995 LINC00846Q9NV44 126 aa5.58□□□□□ -1.52
RTN3-209ENST00000538995 IGKV2D-30A0A075B6S6 120 aa5.57□□□□□ -1.52
RTN3-209ENST00000538995 KRTAP9-7A8MTY7 169 aa5.57□□□□□ -1.52
RTN3-209ENST00000538995 IGKV2-30P06310 120 aa5.57□□□□□ -1.52
RTN3-209ENST00000538995 CXCL6P80162 114 aa5.57□□□□□ -1.52
RTN3-209ENST00000538995 H1FX-AS1Q4G0G2 97 aa5.57□□□□□ -1.52
RTN3-209ENST00000538995 Q5W150 140 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms