RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 ITPR3Q14573 2671 aa6.95□□□□□ -1.3
USP3-203ENST00000538686 ZNF469Q96JG9 3925 aaPredicted RBP6.95□□□□□ -1.3
USP3-203ENST00000538686 BAHCC1Q9P281 2608 aa6.94□□□□□ -1.3
USP3-203ENST00000538686 CIRBP-AS1Q8TBR5 109 aa6.94□□□□□ -1.3
USP3-203ENST00000538686 SPACA4Q8TDM5 124 aa6.93□□□□□ -1.3
USP3-203ENST00000538686 TYMSOSQ8TAI1 123 aa6.92□□□□□ -1.3
USP3-203ENST00000538686 CSMD3Q7Z407 3707 aa6.91□□□□□ -1.3
USP3-203ENST00000538686 KRTAP1-5Q9BYS1 174 aa6.91□□□□□ -1.3
USP3-203ENST00000538686 FLNCQ14315 2725 aa6.91□□□□□ -1.3
USP3-203ENST00000538686 TRRAPQ9Y4A5 3859 aa6.9□□□□□ -1.31
USP3-203ENST00000538686 ABCA12Q86UK0 2595 aa6.9□□□□□ -1.31
USP3-203ENST00000538686 Q8N1X5 172 aa6.88□□□□□ -1.31
USP3-203ENST00000538686 KRTAP10-11P60412 298 aa6.87□□□□□ -1.31
USP3-203ENST00000538686 PKD1L1Q8TDX9 2849 aa6.87□□□□□ -1.31
USP3-203ENST00000538686 FLNAP21333 2647 aaKnown RBP6.86□□□□□ -1.31
USP3-203ENST00000538686 VWFP04275 2813 aa6.86□□□□□ -1.31
USP3-203ENST00000538686 TPRXLQ17RH7 258 aa6.85□□□□□ -1.31
USP3-203ENST00000538686 FAM208BQ5VWN6 2430 aa6.84□□□□□ -1.31
USP3-203ENST00000538686 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.83□□□□□ -1.32
USP3-203ENST00000538686 ZNF462Q96JM2 2506 aa6.83□□□□□ -1.32
USP3-203ENST00000538686 RPL37P61927 97 aaKnown RBP6.82□□□□□ -1.32
USP3-203ENST00000538686 COX6B2Q6YFQ2 88 aa6.82□□□□□ -1.32
USP3-203ENST00000538686 LUZP6Q538Z0 58 aa6.81□□□□□ -1.32
USP3-203ENST00000538686 LCE2DQ5TA82 110 aaPredicted RBP6.81□□□□□ -1.32
USP3-203ENST00000538686 FLG2Q5D862 2391 aaPredicted RBP6.81□□□□□ -1.32
USP3-203ENST00000538686 UBE2DNLQ8IWF7 75 aa6.81□□□□□ -1.32
USP3-203ENST00000538686 MYO18BQ8IUG5 2567 aa6.8□□□□□ -1.32
USP3-203ENST00000538686 HELZ2Q9BYK8 2649 aaKnown RBP6.79□□□□□ -1.32
USP3-203ENST00000538686 ANK2Q01484 3957 aa6.78□□□□□ -1.32
USP3-203ENST00000538686 DNAH10Q8IVF4 4471 aa6.77□□□□□ -1.33
USP3-203ENST00000538686 NBDYA0A0U1RRE5 68 aa6.76□□□□□ -1.33
USP3-203ENST00000538686 TENM4Q6N022 2769 aa6.76□□□□□ -1.33
USP3-203ENST00000538686 HECTD1Q9ULT8 2610 aa6.75□□□□□ -1.33
USP3-203ENST00000538686 FBN1P35555 2871 aaKnown RBP6.74□□□□□ -1.33
USP3-203ENST00000538686 LYSTQ99698 3801 aa6.73□□□□□ -1.33
USP3-203ENST00000538686 NOTCH2Q04721 2471 aa6.73□□□□□ -1.33
USP3-203ENST00000538686 FRAS1Q86XX4 4008 aa6.71□□□□□ -1.33
USP3-203ENST00000538686 TENM3Q9P273 2699 aa6.71□□□□□ -1.33
USP3-203ENST00000538686 Q6ZRN7 208 aaPredicted RBP6.69□□□□□ -1.34
USP3-203ENST00000538686 SMR3AQ99954 134 aa6.69□□□□□ -1.34
USP3-203ENST00000538686 DNAH8Q96JB1 4490 aa6.68□□□□□ -1.34
USP3-203ENST00000538686 ACANP16112 2415 aa6.68□□□□□ -1.34
USP3-203ENST00000538686 C10orf95Q9H7T3 257 aa6.66□□□□□ -1.34
USP3-203ENST00000538686 MEGF8Q7Z7M0 2845 aa6.65□□□□□ -1.34
USP3-203ENST00000538686 APLNQ9ULZ1 77 aa6.65□□□□□ -1.35
USP3-203ENST00000538686 IGSF10Q6WRI0 2623 aa6.64□□□□□ -1.35
USP3-203ENST00000538686 CACNA1AO00555 2505 aa6.64□□□□□ -1.35
USP3-203ENST00000538686 DNAH9Q9NYC9 4486 aa6.64□□□□□ -1.35
USP3-203ENST00000538686 KRTAP24-1Q3LI83 254 aa6.63□□□□□ -1.35
USP3-203ENST00000538686 TEP1Q99973 2627 aaKnown RBP6.63□□□□□ -1.35
USP3-203ENST00000538686 KRTAP3-1Q9BYR8 98 aa6.62□□□□□ -1.35
USP3-203ENST00000538686 COL7A1Q02388 2944 aa6.62□□□□□ -1.35
USP3-203ENST00000538686 SEC61BP60468 96 aaKnown RBP6.6□□□□□ -1.35
USP3-203ENST00000538686 NBEAL1Q6ZS30 2694 aa6.6□□□□□ -1.35
USP3-203ENST00000538686 DNAH3Q8TD57 4116 aa6.6□□□□□ -1.35
USP3-203ENST00000538686 KRTAP13-2Q52LG2 175 aa6.59□□□□□ -1.35
USP3-203ENST00000538686 PDZD2O15018 2839 aa6.58□□□□□ -1.36
USP3-203ENST00000538686 FASNP49327 2511 aaKnown RBP6.57□□□□□ -1.36
USP3-203ENST00000538686 TENM1Q9UKZ4 2725 aa6.57□□□□□ -1.36
USP3-203ENST00000538686 A0A0D9SG42 100 aa6.53□□□□□ -1.36
USP3-203ENST00000538686 TGP01266 2768 aa6.52□□□□□ -1.37
USP3-203ENST00000538686 S4R3F8 94 aa6.52□□□□□ -1.37
USP3-203ENST00000538686 MAST4O15021 2626 aa6.52□□□□□ -1.37
USP3-203ENST00000538686 KRTAP10-6P60371 365 aaPredicted RBP6.51□□□□□ -1.37
USP3-203ENST00000538686 ATRQ13535 2644 aa6.51□□□□□ -1.37
USP3-203ENST00000538686 VPS13DQ5THJ4 4388 aa6.51□□□□□ -1.37
USP3-203ENST00000538686 FLNBO75369 2602 aaKnown RBP6.5□□□□□ -1.37
USP3-203ENST00000538686 DNAH17Q9UFH2 4485 aa6.5□□□□□ -1.37
USP3-203ENST00000538686 HUWE1Q7Z6Z7 4374 aaKnown RBP6.49□□□□□ -1.37
USP3-203ENST00000538686 KRTAP13-4Q3LI77 160 aa6.49□□□□□ -1.37
USP3-203ENST00000538686 XP32Q5T750 250 aa6.49□□□□□ -1.37
USP3-203ENST00000538686 RPS29P62273 56 aaKnown RBP6.46□□□□□ -1.37
USP3-203ENST00000538686 CMYA5Q8N3K9 4069 aa6.43□□□□□ -1.38
USP3-203ENST00000538686 KRTAP3-3Q9BYR6 98 aa6.42□□□□□ -1.38
USP3-203ENST00000538686 KRTAP3-2Q9BYR7 98 aa6.42□□□□□ -1.38
USP3-203ENST00000538686 NOTCH1P46531 2555 aa6.42□□□□□ -1.38
USP3-203ENST00000538686 DYNC2H1Q8NCM8 4307 aaKnown RBP6.42□□□□□ -1.38
USP3-203ENST00000538686 ITPR2Q14571 2701 aa6.41□□□□□ -1.38
USP3-203ENST00000538686 HECTD4Q9Y4D8 3996 aa6.4□□□□□ -1.38
USP3-203ENST00000538686 KRTAP1-4P0C5Y4 121 aa6.4□□□□□ -1.39
USP3-203ENST00000538686 DNAH7Q8WXX0 4024 aa6.38□□□□□ -1.39
USP3-203ENST00000538686 KRTAP12-2P59991 146 aa6.38□□□□□ -1.39
USP3-203ENST00000538686 LOC100996750A0A140TA64 210 aa6.37□□□□□ -1.39
USP3-203ENST00000538686 PLAC4Q8WY50 150 aa6.37□□□□□ -1.39
USP3-203ENST00000538686 KRTAP4-6Q9BYQ5 205 aa6.37□□□□□ -1.39
USP3-203ENST00000538686 STAB2Q8WWQ8 2551 aa6.36□□□□□ -1.39
USP3-203ENST00000538686 NSD1Q96L73 2696 aaPredicted RBP6.36□□□□□ -1.39
USP3-203ENST00000538686 PRKDCP78527 4128 aaKnown RBP6.34□□□□□ -1.39
USP3-203ENST00000538686 KRTAP12-1P59990 96 aa6.33□□□□□ -1.4
USP3-203ENST00000538686 USP24Q9UPU5 2620 aa6.31□□□□□ -1.4
USP3-203ENST00000538686 COL6A5A8TX70 2615 aa6.29□□□□□ -1.4
USP3-203ENST00000538686 C9orf92A6NGG3 77 aa6.26□□□□□ -1.41
USP3-203ENST00000538686 DNAH6Q9C0G6 4158 aa6.26□□□□□ -1.41
USP3-203ENST00000538686 CAMK2N1Q7Z7J9 78 aa6.26□□□□□ -1.41
USP3-203ENST00000538686 KMT2AQ03164 3969 aa6.24□□□□□ -1.41
USP3-203ENST00000538686 PLECQ15149 4684 aaKnown RBP6.23□□□□□ -1.41
USP3-203ENST00000538686 M0QZ58 72 aa6.22□□□□□ -1.41
USP3-203ENST00000538686 DNAH2Q9P225 4427 aa6.2□□□□□ -1.42
USP3-203ENST00000538686 DNAH11Q96DT5 4516 aa6.2□□□□□ -1.42
USP3-203ENST00000538686 J3QKU1 62 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms