RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 ATP11AUNQ6ZP68 121 aa10.49□□□□□ -0.73
CPSF1-209ENST00000532725 NOTCH2NLQ7Z3S9 236 aa10.49□□□□□ -0.73
CPSF1-209ENST00000532725 PCP4L1A6NKN8 68 aa10.47□□□□□ -0.73
CPSF1-209ENST00000532725 IGHV6-1A0A0B4J1U7 121 aa10.45□□□□□ -0.74
CPSF1-209ENST00000532725 KRTAP16-1A8MUX0 517 aa10.45□□□□□ -0.74
CPSF1-209ENST00000532725 J3KT08 172 aa10.45□□□□□ -0.74
CPSF1-209ENST00000532725 KRTAP19-2Q3LHN2 52 aa10.45□□□□□ -0.74
CPSF1-209ENST00000532725 SMCPP49901 116 aaPredicted RBP10.43□□□□□ -0.74
CPSF1-209ENST00000532725 LCE2CQ5TA81 110 aa10.43□□□□□ -0.74
CPSF1-209ENST00000532725 A0A1B0GVX0 72 aa10.42□□□□□ -0.74
CPSF1-209ENST00000532725 K7EP34 96 aa10.4□□□□□ -0.74
CPSF1-209ENST00000532725 PRO0461Q9UI25 63 aa10.39□□□□□ -0.75
CPSF1-209ENST00000532725 C8orf87E5RJ46 101 aa10.38□□□□□ -0.75
CPSF1-209ENST00000532725 NREPQ16612 68 aa10.37□□□□□ -0.75
CPSF1-209ENST00000532725 NDUFB1O75438 58 aa10.35□□□□□ -0.75
CPSF1-209ENST00000532725 A8MWP4 228 aa10.34□□□□□ -0.75
CPSF1-209ENST00000532725 IGKV3D-7A0A0C4DH55 119 aa10.32□□□□□ -0.76
CPSF1-209ENST00000532725 GTF2H5Q6ZYL4 71 aa10.29□□□□□ -0.76
CPSF1-209ENST00000532725 PRR15Q8IV56 129 aa10.27□□□□□ -0.77
CPSF1-209ENST00000532725 C8orf17Q9NRJ1 99 aa10.27□□□□□ -0.77
CPSF1-209ENST00000532725 MT1HP80294 61 aa10.25□□□□□ -0.77
CPSF1-209ENST00000532725 F8W1H4 67 aa10.23□□□□□ -0.77
CPSF1-209ENST00000532725 Q8N9P0 234 aaPredicted RBP10.23□□□□□ -0.77
CPSF1-209ENST00000532725 Q6ZVQ6 151 aa10.21□□□□□ -0.77
CPSF1-209ENST00000532725 COX6B2Q6YFQ2 88 aa10.2□□□□□ -0.78
CPSF1-209ENST00000532725 BPY2O14599 106 aa10.19□□□□□ -0.78
CPSF1-209ENST00000532725 K7EQZ3 153 aa10.18□□□□□ -0.78
CPSF1-209ENST00000532725 MMP24-AS1A0A0U1RRL7 71 aa10.16□□□□□ -0.78
CPSF1-209ENST00000532725 ZCCHC13Q8WW36 166 aaKnown RBP10.16□□□□□ -0.78
CPSF1-209ENST00000532725 LINC00846Q9NV44 126 aa10.16□□□□□ -0.78
CPSF1-209ENST00000532725 ETDBQ3ZM63 59 aa10.15□□□□□ -0.78
CPSF1-209ENST00000532725 FLGP20930 4061 aaPredicted RBP10.12□□□□□ -0.79
CPSF1-209ENST00000532725 TMEM254Q8TBM7 123 aa10.12□□□□□ -0.79
CPSF1-209ENST00000532725 MRPL34Q9BQ48 92 aaKnown RBP10.11□□□□□ -0.79
CPSF1-209ENST00000532725 hDV103S1A0JD37 113 aa10.1□□□□□ -0.79
CPSF1-209ENST00000532725 UBL5Q9BZL1 73 aa10.1□□□□□ -0.79
CPSF1-209ENST00000532725 HRES1P13985 223 aa10.08□□□□□ -0.8
CPSF1-209ENST00000532725 Q8N9L7 120 aa10.08□□□□□ -0.8
CPSF1-209ENST00000532725 MPLKIPQ8TAP9 179 aa10.07□□□□□ -0.8
CPSF1-209ENST00000532725 SPINK7P58062 85 aa10.04□□□□□ -0.8
CPSF1-209ENST00000532725 M0R2T5 61 aa10.03□□□□□ -0.8
CPSF1-209ENST00000532725 LORP23490 312 aaPredicted RBP10.01□□□□□ -0.81
CPSF1-209ENST00000532725 KRTAP10-6P60371 365 aaPredicted RBP10.01□□□□□ -0.81
CPSF1-209ENST00000532725 KRTAP9-2Q9BYQ4 174 aa10.01□□□□□ -0.81
CPSF1-209ENST00000532725 CASC2Q6XLA1 102 aa9.99□□□□□ -0.81
CPSF1-209ENST00000532725 WFDC13Q8IUB5 93 aa9.99□□□□□ -0.81
CPSF1-209ENST00000532725 RBM12B-AS1Q9P1G2 102 aa9.99□□□□□ -0.81
CPSF1-209ENST00000532725 NDUFS5O43920 106 aa9.98□□□□□ -0.81
CPSF1-209ENST00000532725 FAM236DA0A1B0GTK5 79 aa9.94□□□□□ -0.82
CPSF1-209ENST00000532725 FAM236CP0DP71 79 aa9.94□□□□□ -0.82
CPSF1-209ENST00000532725 CXCL6P80162 114 aa9.93□□□□□ -0.82
CPSF1-209ENST00000532725 Q5W150 140 aa9.93□□□□□ -0.82
CPSF1-209ENST00000532725 A0A1B0GV90 55 aa9.92□□□□□ -0.82
CPSF1-209ENST00000532725 HCG22E2RYF7 251 aa9.91□□□□□ -0.82
CPSF1-209ENST00000532725 ACYP1P07311 99 aa9.9□□□□□ -0.82
CPSF1-209ENST00000532725 LCE2DQ5TA82 110 aaPredicted RBP9.9□□□□□ -0.82
CPSF1-209ENST00000532725 FAM240AA0A1B0GVK7 77 aa9.86□□□□□ -0.83
CPSF1-209ENST00000532725 IGKV2D-30A0A075B6S6 120 aa9.79□□□□□ -0.84
CPSF1-209ENST00000532725 IGKV2-30P06310 120 aa9.79□□□□□ -0.84
CPSF1-209ENST00000532725 KRTAP9-8Q9BYQ0 159 aa9.77□□□□□ -0.85
CPSF1-209ENST00000532725 C7orf65Q6ZTY9 151 aa9.76□□□□□ -0.85
CPSF1-209ENST00000532725 ATP5EP2Q5VTU8 51 aa9.73□□□□□ -0.85
CPSF1-209ENST00000532725 TP53AIP1Q9HCN2 124 aa9.73□□□□□ -0.85
CPSF1-209ENST00000532725 LINC00643Q86TS7 51 aa9.68□□□□□ -0.86
CPSF1-209ENST00000532725 H1FX-AS1Q4G0G2 97 aa9.66□□□□□ -0.86
CPSF1-209ENST00000532725 HIST1H4AP62805 103 aaKnown RBP9.65□□□□□ -0.86
CPSF1-209ENST00000532725 MT2AP02795 61 aa9.62□□□□□ -0.87
CPSF1-209ENST00000532725 C4orf26Q17RF5 130 aa9.62□□□□□ -0.87
CPSF1-209ENST00000532725 FSIP2Q5CZC0 6907 aa9.59□□□□□ -0.87
CPSF1-209ENST00000532725 KRTAP9-6A0A140TA67 174 aa9.58□□□□□ -0.88
CPSF1-209ENST00000532725 J3QR89 54 aa9.57□□□□□ -0.88
CPSF1-209ENST00000532725 A0A087WVE0 104 aa9.56□□□□□ -0.88
CPSF1-209ENST00000532725 MT1FP04733 61 aa9.55□□□□□ -0.88
CPSF1-209ENST00000532725 KRTAP3-1Q9BYR8 98 aa9.54□□□□□ -0.88
CPSF1-209ENST00000532725 TRAV22A0A0B4J277 110 aa9.52□□□□□ -0.89
CPSF1-209ENST00000532725 CYP4F30PQ9H0H9 118 aa9.52□□□□□ -0.89
CPSF1-209ENST00000532725 UQCRQO14949 82 aa9.51□□□□□ -0.89
CPSF1-209ENST00000532725 CRCT1Q9UGL9 99 aa9.51□□□□□ -0.89
CPSF1-209ENST00000532725 KRTAP10-10P60014 251 aa9.5□□□□□ -0.89
CPSF1-209ENST00000532725 C1orf64Q8NEQ6 169 aa9.48□□□□□ -0.89
CPSF1-209ENST00000532725 KRTAP9-3Q9BYQ3 159 aa9.46□□□□□ -0.9
CPSF1-209ENST00000532725 LOC101927531A0A1B0GV80 90 aa9.45□□□□□ -0.9
CPSF1-209ENST00000532725 H0Y9P7 68 aa9.41□□□□□ -0.9
CPSF1-209ENST00000532725 ATOX1O00244 68 aa9.4□□□□□ -0.9
CPSF1-209ENST00000532725 OCR1Q9BZK8 76 aa9.39□□□□□ -0.91
CPSF1-209ENST00000532725 LCE2BO14633 110 aa9.34□□□□□ -0.91
CPSF1-209ENST00000532725 S4R3F8 94 aa9.34□□□□□ -0.91
CPSF1-209ENST00000532725 USH2AO75445 5202 aa9.34□□□□□ -0.91
CPSF1-209ENST00000532725 C5orf47Q569G3 176 aa9.32□□□□□ -0.92
CPSF1-209ENST00000532725 K7ERU9 68 aa9.31□□□□□ -0.92
CPSF1-209ENST00000532725 LCA10Q71F78 164 aa9.31□□□□□ -0.92
CPSF1-209ENST00000532725 LINC00208Q96KT6 92 aa9.3□□□□□ -0.92
CPSF1-209ENST00000532725 MP68P56378 58 aa9.27□□□□□ -0.93
CPSF1-209ENST00000532725 CSAG1Q6PB30 78 aa9.27□□□□□ -0.93
CPSF1-209ENST00000532725 IMUPQ9GZP8 106 aa9.27□□□□□ -0.93
CPSF1-209ENST00000532725 MT-ATP8P03928 68 aa9.25□□□□□ -0.93
CPSF1-209ENST00000532725 SCGB1A1P11684 91 aa9.25□□□□□ -0.93
CPSF1-209ENST00000532725 KRTAP3-3Q9BYR6 98 aa9.25□□□□□ -0.93
CPSF1-209ENST00000532725 KLKP1Q107X0 134 aa9.24□□□□□ -0.93
CPSF1-209ENST00000532725 SSPOA2VEC9 5147 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 109.8 ms