RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 C21orf62-AS1Q17RA5 79 aa6.82□□□□□ -1.32
VPS28-211ENST00000530790 NOTCH2NLQ7Z3S9 236 aa6.82□□□□□ -1.32
VPS28-211ENST00000530790 ATXN8Q156A1 80 aa6.81□□□□□ -1.32
VPS28-211ENST00000530790 A0A1B0GVX0 72 aa6.8□□□□□ -1.32
VPS28-211ENST00000530790 C8orf87E5RJ46 101 aa6.8□□□□□ -1.32
VPS28-211ENST00000530790 CRCT1Q9UGL9 99 aa6.8□□□□□ -1.32
VPS28-211ENST00000530790 J3KT08 172 aa6.78□□□□□ -1.32
VPS28-211ENST00000530790 COL5A1-AS1Q5SY13 56 aa6.78□□□□□ -1.32
VPS28-211ENST00000530790 C9orf118A6NHY6 69 aa6.77□□□□□ -1.33
VPS28-211ENST00000530790 JMJD7-PLA2G4BH0Y9G9 81 aa6.77□□□□□ -1.33
VPS28-211ENST00000530790 FSIP2Q5CZC0 6907 aa6.76□□□□□ -1.33
VPS28-211ENST00000530790 LYRM7Q5U5X0 104 aa6.76□□□□□ -1.33
VPS28-211ENST00000530790 Q6ZQT0 140 aa6.76□□□□□ -1.33
VPS28-211ENST00000530790 FAM236DA0A1B0GTK5 79 aa6.75□□□□□ -1.33
VPS28-211ENST00000530790 FAM236CP0DP71 79 aa6.75□□□□□ -1.33
VPS28-211ENST00000530790 LOC110117498A0A087WWA1 95 aa6.74□□□□□ -1.33
VPS28-211ENST00000530790 NDUFB1O75438 58 aa6.73□□□□□ -1.33
VPS28-211ENST00000530790 RBM12B-AS1Q9P1G2 102 aa6.73□□□□□ -1.33
VPS28-211ENST00000530790 A0A1B0GW54 56 aa6.72□□□□□ -1.33
VPS28-211ENST00000530790 A0A1W2PPM0 123 aa6.72□□□□□ -1.33
VPS28-211ENST00000530790 PDE6GP18545 87 aa6.72□□□□□ -1.33
VPS28-211ENST00000530790 C14orf132Q9NPU4 83 aa6.71□□□□□ -1.34
VPS28-211ENST00000530790 HRES1P13985 223 aa6.7□□□□□ -1.34
VPS28-211ENST00000530790 A8MWP4 228 aa6.69□□□□□ -1.34
VPS28-211ENST00000530790 MPLKIPQ8TAP9 179 aa6.69□□□□□ -1.34
VPS28-211ENST00000530790 ZCCHC13Q8WW36 166 aaKnown RBP6.69□□□□□ -1.34
VPS28-211ENST00000530790 C8orf17Q9NRJ1 99 aa6.67□□□□□ -1.34
VPS28-211ENST00000530790 IGKV3D-7A0A0C4DH55 119 aa6.65□□□□□ -1.34
VPS28-211ENST00000530790 Q8N9P0 234 aaPredicted RBP6.65□□□□□ -1.34
VPS28-211ENST00000530790 SPCS1Q9Y6A9 102 aa6.65□□□□□ -1.34
VPS28-211ENST00000530790 MTURNQ8N3F0 131 aa6.64□□□□□ -1.35
VPS28-211ENST00000530790 KRTAP9-8Q9BYQ0 159 aa6.64□□□□□ -1.35
VPS28-211ENST00000530790 K7EP34 96 aa6.63□□□□□ -1.35
VPS28-211ENST00000530790 NREPQ16612 68 aa6.63□□□□□ -1.35
VPS28-211ENST00000530790 A0A1B0GV90 55 aa6.62□□□□□ -1.35
VPS28-211ENST00000530790 H3BT86 120 aa6.62□□□□□ -1.35
VPS28-211ENST00000530790 SPINK7P58062 85 aa6.62□□□□□ -1.35
VPS28-211ENST00000530790 Q6ZVQ6 151 aa6.62□□□□□ -1.35
VPS28-211ENST00000530790 PRR15Q8IV56 129 aa6.61□□□□□ -1.35
VPS28-211ENST00000530790 MMP24-AS1A0A0U1RRL7 71 aa6.57□□□□□ -1.36
VPS28-211ENST00000530790 MT2AP02795 61 aa6.57□□□□□ -1.36
VPS28-211ENST00000530790 PRO0461Q9UI25 63 aa6.57□□□□□ -1.36
VPS28-211ENST00000530790 SMCPP49901 116 aaPredicted RBP6.56□□□□□ -1.36
VPS28-211ENST00000530790 GTF2H5Q6ZYL4 71 aa6.56□□□□□ -1.36
VPS28-211ENST00000530790 WFDC13Q8IUB5 93 aa6.56□□□□□ -1.36
VPS28-211ENST00000530790 TMEM254Q8TBM7 123 aa6.56□□□□□ -1.36
VPS28-211ENST00000530790 MRPL34Q9BQ48 92 aaKnown RBP6.56□□□□□ -1.36
VPS28-211ENST00000530790 K7EQZ3 153 aa6.55□□□□□ -1.36
VPS28-211ENST00000530790 hDV103S1A0JD37 113 aa6.53□□□□□ -1.36
VPS28-211ENST00000530790 BPY2O14599 106 aa6.52□□□□□ -1.37
VPS28-211ENST00000530790 MT1FP04733 61 aa6.52□□□□□ -1.37
VPS28-211ENST00000530790 NDUFS5O43920 106 aa6.51□□□□□ -1.37
VPS28-211ENST00000530790 KRTAP10-10P60014 251 aa6.5□□□□□ -1.37
VPS28-211ENST00000530790 F8W1H4 67 aa6.49□□□□□ -1.37
VPS28-211ENST00000530790 USH2AO75445 5202 aa6.46□□□□□ -1.38
VPS28-211ENST00000530790 ETDBQ3ZM63 59 aa6.44□□□□□ -1.38
VPS28-211ENST00000530790 Q8N9L7 120 aa6.44□□□□□ -1.38
VPS28-211ENST00000530790 KRTAP9-3Q9BYQ3 159 aa6.44□□□□□ -1.38
VPS28-211ENST00000530790 CASC2Q6XLA1 102 aa6.43□□□□□ -1.38
VPS28-211ENST00000530790 C7orf65Q6ZTY9 151 aa6.43□□□□□ -1.38
VPS28-211ENST00000530790 IGKV2D-30A0A075B6S6 120 aa6.42□□□□□ -1.38
VPS28-211ENST00000530790 IGKV2-30P06310 120 aa6.42□□□□□ -1.38
VPS28-211ENST00000530790 LCE2BO14633 110 aa6.41□□□□□ -1.38
VPS28-211ENST00000530790 HCG22E2RYF7 251 aa6.4□□□□□ -1.38
VPS28-211ENST00000530790 H1FX-AS1Q4G0G2 97 aa6.4□□□□□ -1.38
VPS28-211ENST00000530790 Q5W150 140 aa6.4□□□□□ -1.38
VPS28-211ENST00000530790 UBL5Q9BZL1 73 aa6.4□□□□□ -1.38
VPS28-211ENST00000530790 SSPOA2VEC9 5147 aa6.4□□□□□ -1.39
VPS28-211ENST00000530790 CXCL6P80162 114 aa6.37□□□□□ -1.39
VPS28-211ENST00000530790 LINC00846Q9NV44 126 aa6.37□□□□□ -1.39
VPS28-211ENST00000530790 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.34□□□□□ -1.39
VPS28-211ENST00000530790 KRTAP19-1Q8IUB9 90 aa6.33□□□□□ -1.4
VPS28-211ENST00000530790 C4orf26Q17RF5 130 aa6.3□□□□□ -1.4
VPS28-211ENST00000530790 FCGBPQ9Y6R7 5405 aaPredicted RBP6.26□□□□□ -1.41
VPS28-211ENST00000530790 KRTAP9-7A8MTY7 169 aa6.26□□□□□ -1.41
VPS28-211ENST00000530790 TP53AIP1Q9HCN2 124 aa6.23□□□□□ -1.41
VPS28-211ENST00000530790 FAM240AA0A1B0GVK7 77 aa6.22□□□□□ -1.41
VPS28-211ENST00000530790 ACYP1P07311 99 aa6.21□□□□□ -1.42
VPS28-211ENST00000530790 KRTAP19-6Q3LI70 58 aa6.21□□□□□ -1.42
VPS28-211ENST00000530790 C5orf47Q569G3 176 aa6.19□□□□□ -1.42
VPS28-211ENST00000530790 S4R3F8 94 aa6.19□□□□□ -1.42
VPS28-211ENST00000530790 J3QR89 54 aa6.18□□□□□ -1.42
VPS28-211ENST00000530790 C1orf64Q8NEQ6 169 aa6.18□□□□□ -1.42
VPS28-211ENST00000530790 K7ERU9 68 aa6.16□□□□□ -1.42
VPS28-211ENST00000530790 KRTAP3-1Q9BYR8 98 aa6.16□□□□□ -1.42
VPS28-211ENST00000530790 FAM236AA0A1B0GUQ0 79 aa6.15□□□□□ -1.42
VPS28-211ENST00000530790 FAM236BA0A1B0GV22 79 aa6.15□□□□□ -1.42
VPS28-211ENST00000530790 LCA10Q71F78 164 aa6.13□□□□□ -1.43
VPS28-211ENST00000530790 CSAG1Q6PB30 78 aa6.12□□□□□ -1.43
VPS28-211ENST00000530790 TRAV22A0A0B4J277 110 aa6.11□□□□□ -1.43
VPS28-211ENST00000530790 ATP5EP2Q5VTU8 51 aa6.11□□□□□ -1.43
VPS28-211ENST00000530790 LINC00643Q86TS7 51 aa6.11□□□□□ -1.43
VPS28-211ENST00000530790 CYP4F30PQ9H0H9 118 aa6.09□□□□□ -1.43
VPS28-211ENST00000530790 LOC101927531A0A1B0GV80 90 aa6.08□□□□□ -1.44
VPS28-211ENST00000530790 HIST1H4AP62805 103 aaKnown RBP6.06□□□□□ -1.44
VPS28-211ENST00000530790 MACF1Q9UPN3 7388 aaKnown RBP6.05□□□□□ -1.44
VPS28-211ENST00000530790 MT-ATP8P03928 68 aa6.03□□□□□ -1.44
VPS28-211ENST00000530790 A0A087WVE0 104 aa6.02□□□□□ -1.45
VPS28-211ENST00000530790 UQCRQO14949 82 aa6.02□□□□□ -1.45
VPS28-211ENST00000530790 ATOX1O00244 68 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms