RNA–Protein interactions for RNA: ENST00000528865.5

CSTF3-208, Transcript of cleavage stimulation factor subunit 3, human

TSL 5

Gene CSTF3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSTF3-208	ENST00000528865		A8MUN3	132 aa		4.93	□□□□□ -1.62
CSTF3-208	ENST00000528865	LCE2B	O14633	110 aa		4.93	□□□□□ -1.62
CSTF3-208	ENST00000528865	C1orf134	Q5TEV5	83 aa		4.93	□□□□□ -1.62
CSTF3-208	ENST00000528865	NOTCH2NL	Q7Z3S9	236 aa		4.93	□□□□□ -1.62
CSTF3-208	ENST00000528865	DNAH7	Q8WXX0	4024 aa		4.93	□□□□□ -1.62
CSTF3-208	ENST00000528865	STARD9	Q9P2P6	4700 aa		4.92	□□□□□ -1.62
CSTF3-208	ENST00000528865	KRTAP13-3	Q3SY46	172 aa		4.92	□□□□□ -1.62
CSTF3-208	ENST00000528865	C8orf87	E5RJ46	101 aa		4.91	□□□□□ -1.62
CSTF3-208	ENST00000528865	PRKDC	P78527	4128 aa	Known RBP	4.91	□□□□□ -1.62
CSTF3-208	ENST00000528865	NDUFS5	O43920	106 aa		4.9	□□□□□ -1.63
CSTF3-208	ENST00000528865	PCOTH	Q58A44	107 aa		4.9	□□□□□ -1.63
CSTF3-208	ENST00000528865	LINC01558	Q9Y6Z2	57 aa		4.9	□□□□□ -1.63
CSTF3-208	ENST00000528865		Q75L30	129 aa		4.89	□□□□□ -1.63
CSTF3-208	ENST00000528865	HECTD4	Q9Y4D8	3996 aa		4.88	□□□□□ -1.63
CSTF3-208	ENST00000528865	DNAH11	Q96DT5	4516 aa		4.87	□□□□□ -1.63
CSTF3-208	ENST00000528865	CSMD3	Q7Z407	3707 aa		4.87	□□□□□ -1.63
CSTF3-208	ENST00000528865	HRES1	P13985	223 aa		4.87	□□□□□ -1.63
CSTF3-208	ENST00000528865		Q5W150	140 aa		4.87	□□□□□ -1.63
CSTF3-208	ENST00000528865	PRR15L	Q9BU68	103 aa		4.87	□□□□□ -1.63
CSTF3-208	ENST00000528865	CIRBP-AS1	Q8TBR5	109 aa		4.86	□□□□□ -1.63
CSTF3-208	ENST00000528865	DNAH5	Q8TE73	4624 aa		4.85	□□□□□ -1.63
CSTF3-208	ENST00000528865	CHKB-CPT1B	H3BT56	60 aa		4.85	□□□□□ -1.63
CSTF3-208	ENST00000528865	ALMS1	Q8TCU4	4167 aa		4.84	□□□□□ -1.63
CSTF3-208	ENST00000528865	SPINK6	Q6UWN8	80 aa		4.84	□□□□□ -1.63
CSTF3-208	ENST00000528865		Q6ZSA8	131 aa		4.84	□□□□□ -1.63
CSTF3-208	ENST00000528865	KRTAP10-2	P60368	255 aa		4.83	□□□□□ -1.64
CSTF3-208	ENST00000528865	KRTAP13-2	Q52LG2	175 aa		4.83	□□□□□ -1.64
CSTF3-208	ENST00000528865	KMT2A	Q03164	3969 aa		4.83	□□□□□ -1.64
CSTF3-208	ENST00000528865	LY6G6C	O95867	125 aa		4.82	□□□□□ -1.64
CSTF3-208	ENST00000528865	LINC00313	P59037	77 aa		4.82	□□□□□ -1.64
CSTF3-208	ENST00000528865	LCA10	Q71F78	164 aa		4.82	□□□□□ -1.64
CSTF3-208	ENST00000528865	COL7A1	Q02388	2944 aa		4.81	□□□□□ -1.64
CSTF3-208	ENST00000528865	FAM229A	H3BQW9	127 aa		4.81	□□□□□ -1.64
CSTF3-208	ENST00000528865	ACYP2	P14621	99 aa		4.81	□□□□□ -1.64
CSTF3-208	ENST00000528865	SRRM2	Q9UQ35	2752 aa	Known RBP	4.8	□□□□□ -1.64
CSTF3-208	ENST00000528865		A8MU10	97 aa		4.8	□□□□□ -1.64
CSTF3-208	ENST00000528865	KRTAP16-1	A8MUX0	517 aa		4.8	□□□□□ -1.64
CSTF3-208	ENST00000528865	KRTAP10-1	P60331	282 aa		4.8	□□□□□ -1.64
CSTF3-208	ENST00000528865	PMAIP1	Q13794	54 aa		4.8	□□□□□ -1.64
CSTF3-208	ENST00000528865	SPAG11A	Q6PDA7	123 aa		4.8	□□□□□ -1.64
CSTF3-208	ENST00000528865	ATP11AUN	Q6ZP68	121 aa		4.8	□□□□□ -1.64
CSTF3-208	ENST00000528865	FRAS1	Q86XX4	4008 aa		4.8	□□□□□ -1.64
CSTF3-208	ENST00000528865	IGKV2-30	P06310	120 aa		4.79	□□□□□ -1.64
CSTF3-208	ENST00000528865	KRTAP1-4	P0C5Y4	121 aa		4.79	□□□□□ -1.64
CSTF3-208	ENST00000528865	DMAC1	Q96GE9	116 aa		4.79	□□□□□ -1.64
CSTF3-208	ENST00000528865	CDC42SE1	Q9NRR8	79 aa		4.79	□□□□□ -1.64
CSTF3-208	ENST00000528865	SACS	Q9NZJ4	4579 aa		4.79	□□□□□ -1.64
CSTF3-208	ENST00000528865		A6NED7	52 aa		4.78	□□□□□ -1.64
CSTF3-208	ENST00000528865	PRR26	Q8N8Z3	221 aa		4.78	□□□□□ -1.64
CSTF3-208	ENST00000528865	TENM2	Q9NT68	2774 aa		4.77	□□□□□ -1.65
CSTF3-208	ENST00000528865	LRP1B	Q9NZR2	4599 aa		4.74	□□□□□ -1.65
CSTF3-208	ENST00000528865	SPINK7	P58062	85 aa		4.73	□□□□□ -1.65
CSTF3-208	ENST00000528865		A6NN06	94 aa		4.72	□□□□□ -1.65
CSTF3-208	ENST00000528865	FAT2	Q9NYQ8	4349 aa		4.71	□□□□□ -1.66
CSTF3-208	ENST00000528865	SPINK1	P00995	79 aa		4.71	□□□□□ -1.66
CSTF3-208	ENST00000528865	RPS29	P62273	56 aa	Known RBP	4.71	□□□□□ -1.66
CSTF3-208	ENST00000528865	SPTSSB	Q8NFR3	76 aa		4.69	□□□□□ -1.66
CSTF3-208	ENST00000528865	TYMSOS	Q8TAI1	123 aa		4.69	□□□□□ -1.66
CSTF3-208	ENST00000528865	RETNLB	Q9BQ08	111 aa		4.69	□□□□□ -1.66
CSTF3-208	ENST00000528865	PLA2G1B	P04054	148 aa	Known RBP	4.68	□□□□□ -1.66
CSTF3-208	ENST00000528865	LCE2A	Q5TA79	106 aa	Predicted RBP	4.68	□□□□□ -1.66
CSTF3-208	ENST00000528865	KTN1-AS1	Q86SY8	53 aa		4.68	□□□□□ -1.66
CSTF3-208	ENST00000528865	PKD1	P98161	4303 aa		4.67	□□□□□ -1.66
CSTF3-208	ENST00000528865	IGKV2D-30	A0A075B6S6	120 aa		4.67	□□□□□ -1.66
CSTF3-208	ENST00000528865	SEC61G	P60059	68 aa		4.66	□□□□□ -1.66
CSTF3-208	ENST00000528865	SPATA8	Q6RVD6	105 aa		4.65	□□□□□ -1.67
CSTF3-208	ENST00000528865		A0A1B0GU69	56 aa		4.64	□□□□□ -1.67
CSTF3-208	ENST00000528865	DNHD1	Q96M86	4753 aa		4.63	□□□□□ -1.67
CSTF3-208	ENST00000528865		H3BS24	57 aa		4.63	□□□□□ -1.67
CSTF3-208	ENST00000528865	LINC00304	Q8N9R0	145 aa		4.63	□□□□□ -1.67
CSTF3-208	ENST00000528865	VPS13B	Q7Z7G8	4022 aa		4.62	□□□□□ -1.67
CSTF3-208	ENST00000528865	KRTAP21-3	Q3LHN1	58 aa		4.62	□□□□□ -1.67
CSTF3-208	ENST00000528865	PKHD1L1	Q86WI1	4243 aa		4.61	□□□□□ -1.67
CSTF3-208	ENST00000528865	C7orf65	Q6ZTY9	151 aa		4.61	□□□□□ -1.67
CSTF3-208	ENST00000528865	HYDIN	Q4G0P3	5121 aa		4.61	□□□□□ -1.67
CSTF3-208	ENST00000528865		A8MUU9	505 aa		4.6	□□□□□ -1.67
CSTF3-208	ENST00000528865	FBN3	Q75N90	2809 aa		4.6	□□□□□ -1.67
CSTF3-208	ENST00000528865	MEGF8	Q7Z7M0	2845 aa		4.59	□□□□□ -1.67
CSTF3-208	ENST00000528865	C20orf166-AS1	Q96NR2	134 aa		4.59	□□□□□ -1.67
CSTF3-208	ENST00000528865	DYNC1H1	Q14204	4646 aa	Known RBP	4.59	□□□□□ -1.68
CSTF3-208	ENST00000528865	TG	P01266	2768 aa		4.59	□□□□□ -1.68
CSTF3-208	ENST00000528865	KRTAP4-8	Q9BYQ9	185 aa		4.58	□□□□□ -1.68
CSTF3-208	ENST00000528865	UQCR11	O14957	56 aa		4.57	□□□□□ -1.68
CSTF3-208	ENST00000528865	KRTAP10-4	P60372	401 aa	Predicted RBP	4.57	□□□□□ -1.68
CSTF3-208	ENST00000528865		A0A1B0GVY2	172 aa		4.56	□□□□□ -1.68
CSTF3-208	ENST00000528865	MIR22HG	Q0VDD5	57 aa		4.56	□□□□□ -1.68
CSTF3-208	ENST00000528865	RBM12B-AS1	Q9P1G2	102 aa		4.55	□□□□□ -1.68
CSTF3-208	ENST00000528865	APOB	P04114	4563 aa	Known RBP	4.54	□□□□□ -1.68
CSTF3-208	ENST00000528865		Q8N1X5	172 aa		4.53	□□□□□ -1.68
CSTF3-208	ENST00000528865	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.52	□□□□□ -1.69
CSTF3-208	ENST00000528865	KRTAP3-1	Q9BYR8	98 aa		4.52	□□□□□ -1.69
CSTF3-208	ENST00000528865	SMR3B	P02814	79 aa	Predicted RBP	4.51	□□□□□ -1.69
CSTF3-208	ENST00000528865	KRTAP9-2	Q9BYQ4	174 aa		4.49	□□□□□ -1.69
CSTF3-208	ENST00000528865	KRTAP9-6	A0A140TA67	174 aa		4.48	□□□□□ -1.69
CSTF3-208	ENST00000528865	C9orf92	A6NGG3	77 aa		4.47	□□□□□ -1.69
CSTF3-208	ENST00000528865	XP32	Q5T750	250 aa		4.47	□□□□□ -1.69
CSTF3-208	ENST00000528865	FAT1	Q14517	4588 aa		4.46	□□□□□ -1.7
CSTF3-208	ENST00000528865	PKHD1	P08F94	4074 aa		4.44	□□□□□ -1.7
CSTF3-208	ENST00000528865	COX6B2	Q6YFQ2	88 aa		4.44	□□□□□ -1.7
CSTF3-208	ENST00000528865	KRTAP10-8	P60410	259 aa		4.42	□□□□□ -1.7

Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms