RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 NIPBLQ6KC79 2804 aaeCLIP7.75□□□□□ -1.17
TCOF1-213ENST00000514442 Q6ZSA8 131 aa7.75□□□□□ -1.17
TCOF1-213ENST00000514442 DCHS2Q6V1P9 2916 aa7.75□□□□□ -1.17
TCOF1-213ENST00000514442 Q5VSD8 79 aa7.74□□□□□ -1.17
TCOF1-213ENST00000514442 A0A0D9SG42 100 aa7.73□□□□□ -1.17
TCOF1-213ENST00000514442 KRTAP11-1Q8IUC1 163 aa7.73□□□□□ -1.17
TCOF1-213ENST00000514442 FBN2P35556 2912 aa7.72□□□□□ -1.17
TCOF1-213ENST00000514442 KRTAP7-1Q8IUC3 87 aa7.7□□□□□ -1.18
TCOF1-213ENST00000514442 LAMA5O15230 3695 aa7.7□□□□□ -1.18
TCOF1-213ENST00000514442 KRTAP25-1Q3LHN0 102 aa7.69□□□□□ -1.18
TCOF1-213ENST00000514442 LINC00483Q53H64 154 aa7.69□□□□□ -1.18
TCOF1-213ENST00000514442 TENM4Q6N022 2769 aa7.69□□□□□ -1.18
TCOF1-213ENST00000514442 Q6ZRN7 208 aaPredicted RBP7.69□□□□□ -1.18
TCOF1-213ENST00000514442 NF1P21359 2839 aa7.69□□□□□ -1.18
TCOF1-213ENST00000514442 ASPMQ8IZT6 3477 aa7.67□□□□□ -1.18
TCOF1-213ENST00000514442 DMDP11532 3685 aa7.66□□□□□ -1.18
TCOF1-213ENST00000514442 DCHS1Q96JQ0 3298 aa7.66□□□□□ -1.18
TCOF1-213ENST00000514442 NOTCH2NLQ7Z3S9 236 aa7.65□□□□□ -1.19
TCOF1-213ENST00000514442 MUC3AQ02505 3323 aa7.63□□□□□ -1.19
TCOF1-213ENST00000514442 ZFHX4Q86UP3 3567 aa7.63□□□□□ -1.19
TCOF1-213ENST00000514442 ROMO1P60602 79 aa7.6□□□□□ -1.19
TCOF1-213ENST00000514442 LUZP6Q538Z0 58 aa7.59□□□□□ -1.19
TCOF1-213ENST00000514442 H1FX-AS1Q4G0G2 97 aa7.59□□□□□ -1.2
TCOF1-213ENST00000514442 S4R3F8 94 aa7.52□□□□□ -1.21
TCOF1-213ENST00000514442 MXRA5Q9NR99 2828 aa7.51□□□□□ -1.21
TCOF1-213ENST00000514442 M0R2T5 61 aa7.51□□□□□ -1.21
TCOF1-213ENST00000514442 RPL37P61927 97 aaKnown RBP7.49□□□□□ -1.21
TCOF1-213ENST00000514442 DMBT1Q9UGM3 2413 aaPredicted RBP7.48□□□□□ -1.21
TCOF1-213ENST00000514442 KRTAP16-1A8MUX0 517 aa7.48□□□□□ -1.21
TCOF1-213ENST00000514442 KRTAP13-1Q8IUC0 172 aa7.46□□□□□ -1.21
TCOF1-213ENST00000514442 KRTAP13-2Q52LG2 175 aa7.45□□□□□ -1.22
TCOF1-213ENST00000514442 A8MUU9 505 aa7.43□□□□□ -1.22
TCOF1-213ENST00000514442 SEC61BP60468 96 aaKnown RBP7.43□□□□□ -1.22
TCOF1-213ENST00000514442 FLG2Q5D862 2391 aaPredicted RBP7.4□□□□□ -1.23
TCOF1-213ENST00000514442 CAMK2N1Q7Z7J9 78 aa7.39□□□□□ -1.23
TCOF1-213ENST00000514442 CELSR1Q9NYQ6 3014 aa7.39□□□□□ -1.23
TCOF1-213ENST00000514442 NDUFAF8A1L188 74 aa7.38□□□□□ -1.23
TCOF1-213ENST00000514442 KRTAP21-3Q3LHN1 58 aa7.37□□□□□ -1.23
TCOF1-213ENST00000514442 SMG1Q96Q15 3661 aaKnown RBP7.37□□□□□ -1.23
TCOF1-213ENST00000514442 A0A0A0MQY5 61 aa7.35□□□□□ -1.23
TCOF1-213ENST00000514442 CSMD1Q96PZ7 3565 aa7.34□□□□□ -1.23
TCOF1-213ENST00000514442 NBPF19A0A087WUL8 3843 aa7.34□□□□□ -1.23
TCOF1-213ENST00000514442 R4GN34 69 aa7.32□□□□□ -1.24
TCOF1-213ENST00000514442 TENM3Q9P273 2699 aa7.31□□□□□ -1.24
TCOF1-213ENST00000514442 PDZD2O15018 2839 aa7.3□□□□□ -1.24
TCOF1-213ENST00000514442 RPS29P62273 56 aaKnown RBP7.28□□□□□ -1.24
TCOF1-213ENST00000514442 TENM1Q9UKZ4 2725 aa7.25□□□□□ -1.25
TCOF1-213ENST00000514442 H0YAA0 97 aa7.25□□□□□ -1.25
TCOF1-213ENST00000514442 TENM2Q9NT68 2774 aa7.23□□□□□ -1.25
TCOF1-213ENST00000514442 M0QZ58 72 aa7.22□□□□□ -1.25
TCOF1-213ENST00000514442 SVEP1Q4LDE5 3571 aa7.21□□□□□ -1.26
TCOF1-213ENST00000514442 C20orf166-AS1Q96NR2 134 aa7.2□□□□□ -1.26
TCOF1-213ENST00000514442 KRTAP13-3Q3SY46 172 aa7.18□□□□□ -1.26
TCOF1-213ENST00000514442 OTOGQ6ZRI0 2925 aa7.17□□□□□ -1.26
TCOF1-213ENST00000514442 PKD1L1Q8TDX9 2849 aa7.17□□□□□ -1.26
TCOF1-213ENST00000514442 KRTAP1-4P0C5Y4 121 aa7.15□□□□□ -1.26
TCOF1-213ENST00000514442 ZFHX3Q15911 3703 aa7.15□□□□□ -1.26
TCOF1-213ENST00000514442 FBN1P35555 2871 aaKnown RBP7.15□□□□□ -1.27
TCOF1-213ENST00000514442 SPENQ96T58 3664 aaKnown RBP7.15□□□□□ -1.27
TCOF1-213ENST00000514442 VWFP04275 2813 aa7.1□□□□□ -1.27
TCOF1-213ENST00000514442 CSMD2Q7Z408 3487 aa7.1□□□□□ -1.27
TCOF1-213ENST00000514442 C10orf95Q9H7T3 257 aa7.05□□□□□ -1.28
TCOF1-213ENST00000514442 CUBNO60494 3623 aa7.04□□□□□ -1.28
TCOF1-213ENST00000514442 ANK3Q12955 4377 aaKnown RBP7.03□□□□□ -1.28
TCOF1-213ENST00000514442 TGP01266 2768 aa7.02□□□□□ -1.29
TCOF1-213ENST00000514442 BSNQ9UPA5 3926 aa7.01□□□□□ -1.29
TCOF1-213ENST00000514442 XP32Q5T750 250 aa6.97□□□□□ -1.29
TCOF1-213ENST00000514442 PLAC4Q8WY50 150 aa6.96□□□□□ -1.29
TCOF1-213ENST00000514442 P0C880 135 aa6.91□□□□□ -1.3
TCOF1-213ENST00000514442 TRRAPQ9Y4A5 3859 aa6.88□□□□□ -1.31
TCOF1-213ENST00000514442 A0A1B0GVY2 172 aa6.86□□□□□ -1.31
TCOF1-213ENST00000514442 TPRXLQ17RH7 258 aa6.8□□□□□ -1.32
TCOF1-213ENST00000514442 KRTAP10-8P60410 259 aa6.71□□□□□ -1.34
TCOF1-213ENST00000514442 FBN3Q75N90 2809 aa6.67□□□□□ -1.34
TCOF1-213ENST00000514442 VPS13CQ709C8 3753 aa6.67□□□□□ -1.34
TCOF1-213ENST00000514442 SRRM2Q9UQ35 2752 aaKnown RBP6.66□□□□□ -1.34
TCOF1-213ENST00000514442 KRTAP15-1Q3LI76 137 aa6.66□□□□□ -1.34
TCOF1-213ENST00000514442 PP632Q6XCG6 107 aa6.65□□□□□ -1.34
TCOF1-213ENST00000514442 KRTAP3-1Q9BYR8 98 aa6.63□□□□□ -1.35
TCOF1-213ENST00000514442 KRTAP12-2P59991 146 aa6.63□□□□□ -1.35
TCOF1-213ENST00000514442 TNP1P09430 55 aa6.59□□□□□ -1.36
TCOF1-213ENST00000514442 MEGF8Q7Z7M0 2845 aa6.56□□□□□ -1.36
TCOF1-213ENST00000514442 HUWE1Q7Z6Z7 4374 aaKnown RBP6.55□□□□□ -1.36
TCOF1-213ENST00000514442 KRTAP13-4Q3LI77 160 aa6.52□□□□□ -1.37
TCOF1-213ENST00000514442 KRTAP10-10P60014 251 aa6.52□□□□□ -1.37
TCOF1-213ENST00000514442 KRTAP12-1P59990 96 aa6.51□□□□□ -1.37
TCOF1-213ENST00000514442 ZNF469Q96JG9 3925 aaPredicted RBP6.51□□□□□ -1.37
TCOF1-213ENST00000514442 KRTAP10-6P60371 365 aaPredicted RBP6.49□□□□□ -1.37
TCOF1-213ENST00000514442 COL7A1Q02388 2944 aa6.47□□□□□ -1.37
TCOF1-213ENST00000514442 AKAP9Q99996 3911 aa6.41□□□□□ -1.38
TCOF1-213ENST00000514442 ALMS1Q8TCU4 4167 aa6.34□□□□□ -1.39
TCOF1-213ENST00000514442 KRTAP3-2Q9BYR7 98 aa6.31□□□□□ -1.4
TCOF1-213ENST00000514442 CSMD3Q7Z407 3707 aa6.3□□□□□ -1.4
TCOF1-213ENST00000514442 MT1HL1P0DM35 61 aa6.29□□□□□ -1.4
TCOF1-213ENST00000514442 DNAH9Q9NYC9 4486 aa6.27□□□□□ -1.4
TCOF1-213ENST00000514442 KRTAP3-3Q9BYR6 98 aa6.25□□□□□ -1.41
TCOF1-213ENST00000514442 KRTAP4-5Q9BYR2 181 aa6.24□□□□□ -1.41
TCOF1-213ENST00000514442 KRTAP10-4P60372 401 aaPredicted RBP6.23□□□□□ -1.41
TCOF1-213ENST00000514442 PRO2289Q9P1D8 64 aa6.2□□□□□ -1.42
TCOF1-213ENST00000514442 PLECQ15149 4684 aaKnown RBP6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms