RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 SMR3BP02814 79 aaPredicted RBP4.97□□□□□ -1.61
LIMCH1-216ENST00000512820 KRTAP13-1Q8IUC0 172 aa4.96□□□□□ -1.62
LIMCH1-216ENST00000512820 Q6ZRN7 208 aaPredicted RBP4.95□□□□□ -1.62
LIMCH1-216ENST00000512820 A8MU10 97 aa4.95□□□□□ -1.62
LIMCH1-216ENST00000512820 DMAC1Q96GE9 116 aa4.95□□□□□ -1.62
LIMCH1-216ENST00000512820 PRAC1Q96KF2 57 aa4.95□□□□□ -1.62
LIMCH1-216ENST00000512820 KMT2BQ9UMN6 2715 aaPredicted RBP4.94□□□□□ -1.62
LIMCH1-216ENST00000512820 STAB2Q8WWQ8 2551 aa4.94□□□□□ -1.62
LIMCH1-216ENST00000512820 CUBNO60494 3623 aa4.92□□□□□ -1.62
LIMCH1-216ENST00000512820 KRTAP10-2P60368 255 aa4.9□□□□□ -1.62
LIMCH1-216ENST00000512820 TENM3Q9P273 2699 aa4.89□□□□□ -1.63
LIMCH1-216ENST00000512820 H3BS24 57 aa4.88□□□□□ -1.63
LIMCH1-216ENST00000512820 A0A1B0GU33 70 aa4.88□□□□□ -1.63
LIMCH1-216ENST00000512820 KRTAP10-1P60331 282 aa4.88□□□□□ -1.63
LIMCH1-216ENST00000512820 A6NN06 94 aa4.87□□□□□ -1.63
LIMCH1-216ENST00000512820 VWFP04275 2813 aa4.87□□□□□ -1.63
LIMCH1-216ENST00000512820 LINC01554Q52M75 96 aa4.87□□□□□ -1.63
LIMCH1-216ENST00000512820 TENM1Q9UKZ4 2725 aa4.87□□□□□ -1.63
LIMCH1-216ENST00000512820 PDZD2O15018 2839 aa4.86□□□□□ -1.63
LIMCH1-216ENST00000512820 ASB16-AS1Q495Z4 193 aa4.85□□□□□ -1.63
LIMCH1-216ENST00000512820 SPINT4Q6UDR6 99 aa4.83□□□□□ -1.64
LIMCH1-216ENST00000512820 CSMD2Q7Z408 3487 aa4.83□□□□□ -1.64
LIMCH1-216ENST00000512820 CSAG1Q6PB30 78 aa4.83□□□□□ -1.64
LIMCH1-216ENST00000512820 A0A0D9SG42 100 aa4.82□□□□□ -1.64
LIMCH1-216ENST00000512820 SPATA8Q6RVD6 105 aa4.82□□□□□ -1.64
LIMCH1-216ENST00000512820 TENM4Q6N022 2769 aa4.81□□□□□ -1.64
LIMCH1-216ENST00000512820 KRTAP13-2Q52LG2 175 aa4.8□□□□□ -1.64
LIMCH1-216ENST00000512820 NBPF19A0A087WUL8 3843 aa4.79□□□□□ -1.64
LIMCH1-216ENST00000512820 CRIPTQ9P021 101 aa4.78□□□□□ -1.64
LIMCH1-216ENST00000512820 ANK3Q12955 4377 aaKnown RBP4.77□□□□□ -1.65
LIMCH1-216ENST00000512820 ADM2Q7Z4H4 148 aa4.74□□□□□ -1.65
LIMCH1-216ENST00000512820 OTOGQ6ZRI0 2925 aa4.74□□□□□ -1.65
LIMCH1-216ENST00000512820 VPS13CQ709C8 3753 aa4.74□□□□□ -1.65
LIMCH1-216ENST00000512820 H1FX-AS1Q4G0G2 97 aa4.73□□□□□ -1.65
LIMCH1-216ENST00000512820 DMBT1Q9UGM3 2413 aaPredicted RBP4.72□□□□□ -1.65
LIMCH1-216ENST00000512820 PKD1L1Q8TDX9 2849 aa4.71□□□□□ -1.66
LIMCH1-216ENST00000512820 FBN1P35555 2871 aaKnown RBP4.7□□□□□ -1.66
LIMCH1-216ENST00000512820 ZFHX3Q15911 3703 aa4.7□□□□□ -1.66
LIMCH1-216ENST00000512820 COX6B2Q6YFQ2 88 aa4.69□□□□□ -1.66
LIMCH1-216ENST00000512820 S4R3F8 94 aa4.68□□□□□ -1.66
LIMCH1-216ENST00000512820 RPS29P62273 56 aaKnown RBP4.67□□□□□ -1.66
LIMCH1-216ENST00000512820 TRRAPQ9Y4A5 3859 aa4.66□□□□□ -1.66
LIMCH1-216ENST00000512820 RPL37P61927 97 aaKnown RBP4.66□□□□□ -1.66
LIMCH1-216ENST00000512820 A0A0A0MQY5 61 aa4.65□□□□□ -1.67
LIMCH1-216ENST00000512820 KRTAP1-4P0C5Y4 121 aa4.64□□□□□ -1.67
LIMCH1-216ENST00000512820 ROMO1P60602 79 aa4.64□□□□□ -1.67
LIMCH1-216ENST00000512820 Q6ZSA8 131 aa4.63□□□□□ -1.67
LIMCH1-216ENST00000512820 KRTAP13-3Q3SY46 172 aa4.63□□□□□ -1.67
LIMCH1-216ENST00000512820 KRTAP16-1A8MUX0 517 aa4.62□□□□□ -1.67
LIMCH1-216ENST00000512820 KRTAP25-1Q3LHN0 102 aa4.6□□□□□ -1.67
LIMCH1-216ENST00000512820 A8MUU9 505 aa4.59□□□□□ -1.68
LIMCH1-216ENST00000512820 TGP01266 2768 aa4.58□□□□□ -1.68
LIMCH1-216ENST00000512820 FLG2Q5D862 2391 aaPredicted RBP4.58□□□□□ -1.68
LIMCH1-216ENST00000512820 Q5VSD8 79 aa4.58□□□□□ -1.68
LIMCH1-216ENST00000512820 C20orf166-AS1Q96NR2 134 aa4.57□□□□□ -1.68
LIMCH1-216ENST00000512820 J3QL48 77 aa4.57□□□□□ -1.68
LIMCH1-216ENST00000512820 ZNF469Q96JG9 3925 aaPredicted RBP4.56□□□□□ -1.68
LIMCH1-216ENST00000512820 TENM2Q9NT68 2774 aa4.56□□□□□ -1.68
LIMCH1-216ENST00000512820 SRRM2Q9UQ35 2752 aaKnown RBP4.55□□□□□ -1.68
LIMCH1-216ENST00000512820 SEC61BP60468 96 aaKnown RBP4.55□□□□□ -1.68
LIMCH1-216ENST00000512820 AKAP9Q99996 3911 aa4.54□□□□□ -1.68
LIMCH1-216ENST00000512820 H0YAA0 97 aa4.52□□□□□ -1.69
LIMCH1-216ENST00000512820 R4GN34 69 aa4.5□□□□□ -1.69
LIMCH1-216ENST00000512820 LUZP6Q538Z0 58 aa4.47□□□□□ -1.69
LIMCH1-216ENST00000512820 CAMK2N1Q7Z7J9 78 aa4.47□□□□□ -1.69
LIMCH1-216ENST00000512820 M0QZ58 72 aa4.47□□□□□ -1.69
LIMCH1-216ENST00000512820 FBN3Q75N90 2809 aa4.44□□□□□ -1.7
LIMCH1-216ENST00000512820 HUWE1Q7Z6Z7 4374 aaKnown RBP4.43□□□□□ -1.7
LIMCH1-216ENST00000512820 MEGF8Q7Z7M0 2845 aa4.38□□□□□ -1.71
LIMCH1-216ENST00000512820 XP32Q5T750 250 aa4.38□□□□□ -1.71
LIMCH1-216ENST00000512820 C10orf95Q9H7T3 257 aa4.35□□□□□ -1.71
LIMCH1-216ENST00000512820 KRTAP3-1Q9BYR8 98 aa4.34□□□□□ -1.71
LIMCH1-216ENST00000512820 CSMD3Q7Z407 3707 aa4.34□□□□□ -1.71
LIMCH1-216ENST00000512820 PLAC4Q8WY50 150 aa4.34□□□□□ -1.71
LIMCH1-216ENST00000512820 NDUFAF8A1L188 74 aa4.33□□□□□ -1.72
LIMCH1-216ENST00000512820 KRTAP21-3Q3LHN1 58 aa4.32□□□□□ -1.72
LIMCH1-216ENST00000512820 P0C880 135 aa4.32□□□□□ -1.72
LIMCH1-216ENST00000512820 COL7A1Q02388 2944 aa4.31□□□□□ -1.72
LIMCH1-216ENST00000512820 A0A1B0GVY2 172 aa4.28□□□□□ -1.72
LIMCH1-216ENST00000512820 M0R2T5 61 aa4.26□□□□□ -1.73
LIMCH1-216ENST00000512820 KRTAP10-8P60410 259 aa4.26□□□□□ -1.73
LIMCH1-216ENST00000512820 DNAH10Q8IVF4 4471 aa4.24□□□□□ -1.73
LIMCH1-216ENST00000512820 DNAH9Q9NYC9 4486 aa4.24□□□□□ -1.73
LIMCH1-216ENST00000512820 PLECQ15149 4684 aaKnown RBP4.21□□□□□ -1.74
LIMCH1-216ENST00000512820 TPRXLQ17RH7 258 aa4.2□□□□□ -1.74
LIMCH1-216ENST00000512820 KRTAP12-2P59991 146 aa4.2□□□□□ -1.74
LIMCH1-216ENST00000512820 DNAH1Q9P2D7 4330 aa4.19□□□□□ -1.74
LIMCH1-216ENST00000512820 KRTAP10-6P60371 365 aaPredicted RBP4.19□□□□□ -1.74
LIMCH1-216ENST00000512820 KRTAP13-4Q3LI77 160 aa4.18□□□□□ -1.74
LIMCH1-216ENST00000512820 KRTAP17-1Q9BYP8 105 aa4.17□□□□□ -1.74
LIMCH1-216ENST00000512820 KRTAP12-1P59990 96 aa4.14□□□□□ -1.75
LIMCH1-216ENST00000512820 TNP1P09430 55 aa4.11□□□□□ -1.75
LIMCH1-216ENST00000512820 VPS13DQ5THJ4 4388 aa4.11□□□□□ -1.75
LIMCH1-216ENST00000512820 PP632Q6XCG6 107 aa4.11□□□□□ -1.75
LIMCH1-216ENST00000512820 DNAH17Q9UFH2 4485 aa4.1□□□□□ -1.75
LIMCH1-216ENST00000512820 DNAH11Q96DT5 4516 aa4.1□□□□□ -1.75
LIMCH1-216ENST00000512820 KRTAP3-3Q9BYR6 98 aa4.1□□□□□ -1.75
LIMCH1-216ENST00000512820 KRTAP10-4P60372 401 aaPredicted RBP4.1□□□□□ -1.75
LIMCH1-216ENST00000512820 KRTAP3-2Q9BYR7 98 aa4.09□□□□□ -1.75
LIMCH1-216ENST00000512820 DNAH8Q96JB1 4490 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms