RNA–Protein interactions for RNA: ENST00000512234.1

SQSTM1-214, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 1,722 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-214ENST00000512234 C14orf132Q9NPU4 83 aa8.38□□□□□ -1.07
SQSTM1-214ENST00000512234 Q6ZQT0 140 aa8.34□□□□□ -1.07
SQSTM1-214ENST00000512234 KRTAP4-1Q9BYQ7 146 aa8.32□□□□□ -1.08
SQSTM1-214ENST00000512234 ATP5EP2Q5VTU8 51 aa8.32□□□□□ -1.08
SQSTM1-214ENST00000512234 FAM236AA0A1B0GUQ0 79 aa8.3□□□□□ -1.08
SQSTM1-214ENST00000512234 FAM236BA0A1B0GV22 79 aa8.3□□□□□ -1.08
SQSTM1-214ENST00000512234 HIST1H4AP62805 103 aaKnown RBP8.3□□□□□ -1.08
SQSTM1-214ENST00000512234 SMIM20Q8N5G0 67 aa8.3□□□□□ -1.08
SQSTM1-214ENST00000512234 IGKV4-1P06312 121 aa8.29□□□□□ -1.08
SQSTM1-214ENST00000512234 LINC00472Q9H8W2 130 aa8.29□□□□□ -1.08
SQSTM1-214ENST00000512234 LOC110117498A0A087WWA1 95 aa8.29□□□□□ -1.08
SQSTM1-214ENST00000512234 PDE6GP18545 87 aa8.29□□□□□ -1.08
SQSTM1-214ENST00000512234 LINC00846Q9NV44 126 aa8.28□□□□□ -1.08
SQSTM1-214ENST00000512234 DSCR10P59022 87 aa8.27□□□□□ -1.09
SQSTM1-214ENST00000512234 PCOTHQ58A44 107 aa8.27□□□□□ -1.09
SQSTM1-214ENST00000512234 CCDC179H3BU77 68 aa8.26□□□□□ -1.09
SQSTM1-214ENST00000512234 ATOX1O00244 68 aa8.26□□□□□ -1.09
SQSTM1-214ENST00000512234 NOTCH2NLQ7Z3S9 236 aa8.26□□□□□ -1.09
SQSTM1-214ENST00000512234 UQCRQO14949 82 aa8.25□□□□□ -1.09
SQSTM1-214ENST00000512234 C5orf47Q569G3 176 aa8.25□□□□□ -1.09
SQSTM1-214ENST00000512234 SEC61BP60468 96 aaKnown RBP8.24□□□□□ -1.09
SQSTM1-214ENST00000512234 UBL5Q9BZL1 73 aa8.21□□□□□ -1.09
SQSTM1-214ENST00000512234 COX7CP15954 63 aa8.2□□□□□ -1.1
SQSTM1-214ENST00000512234 RPL37P61927 97 aaKnown RBP8.2□□□□□ -1.1
SQSTM1-214ENST00000512234 IGHV6-1A0A0B4J1U7 121 aa8.2□□□□□ -1.1
SQSTM1-214ENST00000512234 FAT4Q6V0I7 4981 aa8.17□□□□□ -1.1
SQSTM1-214ENST00000512234 LINC00313P59037 77 aa8.16□□□□□ -1.1
SQSTM1-214ENST00000512234 IGKV3D-7A0A0C4DH55 119 aa8.15□□□□□ -1.1
SQSTM1-214ENST00000512234 SERP2Q8N6R1 65 aa8.15□□□□□ -1.1
SQSTM1-214ENST00000512234 NREPQ16612 68 aa8.15□□□□□ -1.11
SQSTM1-214ENST00000512234 KRTAP16-1A8MUX0 517 aa8.14□□□□□ -1.11
SQSTM1-214ENST00000512234 A0A1B0GVX0 72 aa8.13□□□□□ -1.11
SQSTM1-214ENST00000512234 CXCL6P80162 114 aa8.13□□□□□ -1.11
SQSTM1-214ENST00000512234 Q75L30 129 aa8.12□□□□□ -1.11
SQSTM1-214ENST00000512234 A0A1B0GW54 56 aa8.11□□□□□ -1.11
SQSTM1-214ENST00000512234 A8MUU9 505 aa8.1□□□□□ -1.11
SQSTM1-214ENST00000512234 RPS28P62857 69 aaKnown RBP8.1□□□□□ -1.11
SQSTM1-214ENST00000512234 C20orf166-AS1Q96NR2 134 aa8.1□□□□□ -1.11
SQSTM1-214ENST00000512234 J3KT08 172 aa8.09□□□□□ -1.11
SQSTM1-214ENST00000512234 ATP11AUNQ6ZP68 121 aa8.08□□□□□ -1.12
SQSTM1-214ENST00000512234 Q6ZVQ6 151 aa8.08□□□□□ -1.12
SQSTM1-214ENST00000512234 A0A087WVE0 104 aa8.07□□□□□ -1.12
SQSTM1-214ENST00000512234 A8MWP4 228 aa8.07□□□□□ -1.12
SQSTM1-214ENST00000512234 K7EQZ3 153 aa8.04□□□□□ -1.12
SQSTM1-214ENST00000512234 NDUFB1O75438 58 aa8.04□□□□□ -1.12
SQSTM1-214ENST00000512234 TMEM258P61165 79 aa8.04□□□□□ -1.12
SQSTM1-214ENST00000512234 Q8N9L7 120 aa8.04□□□□□ -1.12
SQSTM1-214ENST00000512234 C8orf17Q9NRJ1 99 aa8.03□□□□□ -1.12
SQSTM1-214ENST00000512234 C8orf87E5RJ46 101 aa8.03□□□□□ -1.12
SQSTM1-214ENST00000512234 PRR15Q8IV56 129 aa8.02□□□□□ -1.13
SQSTM1-214ENST00000512234 BPY2O14599 106 aa8.01□□□□□ -1.13
SQSTM1-214ENST00000512234 KRTAP19-2Q3LHN2 52 aa8.01□□□□□ -1.13
SQSTM1-214ENST00000512234 TRAV7A0A075B6U4 112 aa8□□□□□ -1.13
SQSTM1-214ENST00000512234 A0A0U1RQV1 116 aa8□□□□□ -1.13
SQSTM1-214ENST00000512234 LCE2CQ5TA81 110 aa7.99□□□□□ -1.13
SQSTM1-214ENST00000512234 MMP24-AS1A0A0U1RRL7 71 aa7.98□□□□□ -1.13
SQSTM1-214ENST00000512234 LCE2AQ5TA79 106 aaPredicted RBP7.96□□□□□ -1.14
SQSTM1-214ENST00000512234 KLKP1Q107X0 134 aa7.93□□□□□ -1.14
SQSTM1-214ENST00000512234 WFDC13Q8IUB5 93 aa7.92□□□□□ -1.14
SQSTM1-214ENST00000512234 Q8N9P0 234 aaPredicted RBP7.92□□□□□ -1.14
SQSTM1-214ENST00000512234 hDV103S1A0JD37 113 aa7.9□□□□□ -1.14
SQSTM1-214ENST00000512234 NDUFC1O43677 76 aa7.9□□□□□ -1.14
SQSTM1-214ENST00000512234 CYSTM1Q9H1C7 97 aa7.9□□□□□ -1.14
SQSTM1-214ENST00000512234 ZCCHC13Q8WW36 166 aaKnown RBP7.89□□□□□ -1.15
SQSTM1-214ENST00000512234 MRPL34Q9BQ48 92 aaKnown RBP7.89□□□□□ -1.15
SQSTM1-214ENST00000512234 C20orf197Q8N268 126 aa7.88□□□□□ -1.15
SQSTM1-214ENST00000512234 TMEM254Q8TBM7 123 aa7.88□□□□□ -1.15
SQSTM1-214ENST00000512234 NDUFS5O43920 106 aa7.87□□□□□ -1.15
SQSTM1-214ENST00000512234 COX6B2Q6YFQ2 88 aa7.86□□□□□ -1.15
SQSTM1-214ENST00000512234 MT1HP80294 61 aa7.85□□□□□ -1.15
SQSTM1-214ENST00000512234 CASC2Q6XLA1 102 aa7.85□□□□□ -1.15
SQSTM1-214ENST00000512234 H7BZZ5 65 aa7.83□□□□□ -1.16
SQSTM1-214ENST00000512234 ATP5EP56381 51 aaPredicted RBP7.83□□□□□ -1.16
SQSTM1-214ENST00000512234 FAM236DA0A1B0GTK5 79 aa7.81□□□□□ -1.16
SQSTM1-214ENST00000512234 FAM236CP0DP71 79 aa7.81□□□□□ -1.16
SQSTM1-214ENST00000512234 OCR1Q9BZK8 76 aa7.81□□□□□ -1.16
SQSTM1-214ENST00000512234 HRES1P13985 223 aa7.81□□□□□ -1.16
SQSTM1-214ENST00000512234 Q5W150 140 aa7.81□□□□□ -1.16
SQSTM1-214ENST00000512234 FLGP20930 4061 aaPredicted RBP7.8□□□□□ -1.16
SQSTM1-214ENST00000512234 HCG22E2RYF7 251 aa7.8□□□□□ -1.16
SQSTM1-214ENST00000512234 SPINK7P58062 85 aa7.8□□□□□ -1.16
SQSTM1-214ENST00000512234 PRO0628Q9UI54 55 aa7.79□□□□□ -1.16
SQSTM1-214ENST00000512234 SERP1Q9Y6X1 66 aa7.78□□□□□ -1.16
SQSTM1-214ENST00000512234 C4orf26Q17RF5 130 aa7.75□□□□□ -1.17
SQSTM1-214ENST00000512234 MPLKIPQ8TAP9 179 aa7.74□□□□□ -1.17
SQSTM1-214ENST00000512234 M0R2T5 61 aa7.72□□□□□ -1.17
SQSTM1-214ENST00000512234 SNURFQ9Y675 71 aa7.72□□□□□ -1.17
SQSTM1-214ENST00000512234 IGKV2D-30A0A075B6S6 120 aa7.7□□□□□ -1.18
SQSTM1-214ENST00000512234 IGKV2-30P06310 120 aa7.7□□□□□ -1.18
SQSTM1-214ENST00000512234 RBM12B-AS1Q9P1G2 102 aa7.67□□□□□ -1.18
SQSTM1-214ENST00000512234 SMIM26A0A096LP01 95 aa7.64□□□□□ -1.19
SQSTM1-214ENST00000512234 KRTAP10-6P60371 365 aaPredicted RBP7.64□□□□□ -1.19
SQSTM1-214ENST00000512234 LORP23490 312 aaPredicted RBP7.61□□□□□ -1.19
SQSTM1-214ENST00000512234 SEC61GP60059 68 aa7.61□□□□□ -1.19
SQSTM1-214ENST00000512234 H3BPC8 53 aa7.6□□□□□ -1.19
SQSTM1-214ENST00000512234 C7orf65Q6ZTY9 151 aa7.59□□□□□ -1.19
SQSTM1-214ENST00000512234 V9GYY9 64 aa7.58□□□□□ -1.2
SQSTM1-214ENST00000512234 TP53AIP1Q9HCN2 124 aa7.56□□□□□ -1.2
SQSTM1-214ENST00000512234 MP68P56378 58 aa7.55□□□□□ -1.2
SQSTM1-214ENST00000512234 KRTAP9-2Q9BYQ4 174 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms