RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 C8orf87E5RJ46 101 aa9□□□□□ -0.97
TPM3-220ENST00000509601 NAA38Q9BRA0 125 aaKnown RBP9□□□□□ -0.97
TPM3-220ENST00000509601 USH2AO75445 5202 aa8.99□□□□□ -0.97
TPM3-220ENST00000509601 M0R143 59 aa8.97□□□□□ -0.97
TPM3-220ENST00000509601 ATXN8Q156A1 80 aa8.97□□□□□ -0.97
TPM3-220ENST00000509601 J3KT08 172 aa8.96□□□□□ -0.98
TPM3-220ENST00000509601 C21orf62-AS1Q17RA5 79 aa8.96□□□□□ -0.98
TPM3-220ENST00000509601 SSPOA2VEC9 5147 aa8.95□□□□□ -0.98
TPM3-220ENST00000509601 JMJD7-PLA2G4BH0Y9G9 81 aa8.94□□□□□ -0.98
TPM3-220ENST00000509601 LOC110117498A0A087WWA1 95 aa8.93□□□□□ -0.98
TPM3-220ENST00000509601 FAM236DA0A1B0GTK5 79 aa8.93□□□□□ -0.98
TPM3-220ENST00000509601 FAM236CP0DP71 79 aa8.93□□□□□ -0.98
TPM3-220ENST00000509601 RBM12B-AS1Q9P1G2 102 aa8.92□□□□□ -0.98
TPM3-220ENST00000509601 ZCCHC13Q8WW36 166 aaKnown RBP8.91□□□□□ -0.98
TPM3-220ENST00000509601 A0A1B0GW54 56 aa8.9□□□□□ -0.98
TPM3-220ENST00000509601 Q8N9P0 234 aaPredicted RBP8.9□□□□□ -0.98
TPM3-220ENST00000509601 NDUFB1O75438 58 aa8.88□□□□□ -0.99
TPM3-220ENST00000509601 MT2AP02795 61 aa8.88□□□□□ -0.99
TPM3-220ENST00000509601 PDE6GP18545 87 aa8.88□□□□□ -0.99
TPM3-220ENST00000509601 SMIM6P0DI80 62 aa8.87□□□□□ -0.99
TPM3-220ENST00000509601 C8orf17Q9NRJ1 99 aa8.87□□□□□ -0.99
TPM3-220ENST00000509601 IGKV3D-7A0A0C4DH55 119 aa8.86□□□□□ -0.99
TPM3-220ENST00000509601 A8MWP4 228 aa8.86□□□□□ -0.99
TPM3-220ENST00000509601 SPINK7P58062 85 aa8.86□□□□□ -0.99
TPM3-220ENST00000509601 C14orf132Q9NPU4 83 aa8.86□□□□□ -0.99
TPM3-220ENST00000509601 MT1FP04733 61 aa8.81□□□□□ -1
TPM3-220ENST00000509601 LYRM7Q5U5X0 104 aa8.79□□□□□ -1
TPM3-220ENST00000509601 PRR15Q8IV56 129 aa8.79□□□□□ -1
TPM3-220ENST00000509601 BATFQ16520 125 aa8.78□□□□□ -1
TPM3-220ENST00000509601 NREPQ16612 68 aa8.78□□□□□ -1
TPM3-220ENST00000509601 Q6ZVQ6 151 aa8.78□□□□□ -1
TPM3-220ENST00000509601 MTURNQ8N3F0 131 aa8.78□□□□□ -1
TPM3-220ENST00000509601 TSTD3H0UI37 97 aa8.77□□□□□ -1.01
TPM3-220ENST00000509601 KRTAP9-3Q9BYQ3 159 aa8.77□□□□□ -1.01
TPM3-220ENST00000509601 C9orf118A6NHY6 69 aa8.75□□□□□ -1.01
TPM3-220ENST00000509601 LCE2BO14633 110 aa8.74□□□□□ -1.01
TPM3-220ENST00000509601 TAX1BP3O14907 124 aa8.74□□□□□ -1.01
TPM3-220ENST00000509601 KRTAP10-10P60014 251 aa8.73□□□□□ -1.01
TPM3-220ENST00000509601 MMP24-AS1A0A0U1RRL7 71 aa8.72□□□□□ -1.01
TPM3-220ENST00000509601 LOC105371267A0A1B0GV96 52 aa8.71□□□□□ -1.02
TPM3-220ENST00000509601 H3BT86 120 aa8.71□□□□□ -1.02
TPM3-220ENST00000509601 MRPL34Q9BQ48 92 aaKnown RBP8.71□□□□□ -1.02
TPM3-220ENST00000509601 A0A1W2PPM0 123 aa8.7□□□□□ -1.02
TPM3-220ENST00000509601 TMEM254Q8TBM7 123 aa8.7□□□□□ -1.02
TPM3-220ENST00000509601 WFDC13Q8IUB5 93 aa8.69□□□□□ -1.02
TPM3-220ENST00000509601 FCGBPQ9Y6R7 5405 aaPredicted RBP8.69□□□□□ -1.02
TPM3-220ENST00000509601 K7EQZ3 153 aa8.67□□□□□ -1.02
TPM3-220ENST00000509601 hDV103S1A0JD37 113 aa8.65□□□□□ -1.02
TPM3-220ENST00000509601 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.62□□□□□ -1.03
TPM3-220ENST00000509601 BPY2O14599 106 aa8.6□□□□□ -1.03
TPM3-220ENST00000509601 SMCPP49901 116 aaPredicted RBP8.59□□□□□ -1.03
TPM3-220ENST00000509601 Q5W150 140 aa8.59□□□□□ -1.03
TPM3-220ENST00000509601 KRTAP19-1Q8IUB9 90 aa8.59□□□□□ -1.03
TPM3-220ENST00000509601 NDUFS5O43920 106 aa8.58□□□□□ -1.04
TPM3-220ENST00000509601 Q8N9L7 120 aa8.55□□□□□ -1.04
TPM3-220ENST00000509601 SPCS1Q9Y6A9 102 aa8.55□□□□□ -1.04
TPM3-220ENST00000509601 H1FX-AS1Q4G0G2 97 aa8.54□□□□□ -1.04
TPM3-220ENST00000509601 KRTAP9-7A8MTY7 169 aa8.52□□□□□ -1.05
TPM3-220ENST00000509601 IGKV2D-30A0A075B6S6 120 aa8.51□□□□□ -1.05
TPM3-220ENST00000509601 IGKV2-30P06310 120 aa8.51□□□□□ -1.05
TPM3-220ENST00000509601 CASC2Q6XLA1 102 aa8.49□□□□□ -1.05
TPM3-220ENST00000509601 PRO0461Q9UI25 63 aa8.49□□□□□ -1.05
TPM3-220ENST00000509601 HCG22E2RYF7 251 aa8.47□□□□□ -1.05
TPM3-220ENST00000509601 C7orf65Q6ZTY9 151 aa8.47□□□□□ -1.05
TPM3-220ENST00000509601 LINC00846Q9NV44 126 aa8.46□□□□□ -1.06
TPM3-220ENST00000509601 COL5A1-AS1Q5SY13 56 aa8.44□□□□□ -1.06
TPM3-220ENST00000509601 KRTAP19-6Q3LI70 58 aa8.42□□□□□ -1.06
TPM3-220ENST00000509601 CXCL6P80162 114 aa8.41□□□□□ -1.06
TPM3-220ENST00000509601 K7EP34 96 aa8.4□□□□□ -1.06
TPM3-220ENST00000509601 C4orf26Q17RF5 130 aa8.39□□□□□ -1.07
TPM3-220ENST00000509601 UBL5Q9BZL1 73 aa8.39□□□□□ -1.07
TPM3-220ENST00000509601 MACF1Q9UPN3 7388 aaKnown RBP8.38□□□□□ -1.07
TPM3-220ENST00000509601 SYNE2Q8WXH0 6885 aaKnown RBP8.36□□□□□ -1.07
TPM3-220ENST00000509601 KRTAP3-1Q9BYR8 98 aa8.35□□□□□ -1.07
TPM3-220ENST00000509601 F8W1H4 67 aa8.25□□□□□ -1.09
TPM3-220ENST00000509601 GTF2H5Q6ZYL4 71 aa8.25□□□□□ -1.09
TPM3-220ENST00000509601 ETDBQ3ZM63 59 aa8.24□□□□□ -1.09
TPM3-220ENST00000509601 C5orf47Q569G3 176 aa8.24□□□□□ -1.09
TPM3-220ENST00000509601 C1orf64Q8NEQ6 169 aa8.23□□□□□ -1.09
TPM3-220ENST00000509601 TP53AIP1Q9HCN2 124 aa8.23□□□□□ -1.09
TPM3-220ENST00000509601 S4R3F8 94 aa8.19□□□□□ -1.1
TPM3-220ENST00000509601 CSAG1Q6PB30 78 aa8.17□□□□□ -1.1
TPM3-220ENST00000509601 LCA10Q71F78 164 aa8.17□□□□□ -1.1
TPM3-220ENST00000509601 PCP4L1A6NKN8 68 aa8.16□□□□□ -1.1
TPM3-220ENST00000509601 CYP4F30PQ9H0H9 118 aa8.12□□□□□ -1.11
TPM3-220ENST00000509601 FAM236AA0A1B0GUQ0 79 aa8.11□□□□□ -1.11
TPM3-220ENST00000509601 FAM236BA0A1B0GV22 79 aa8.11□□□□□ -1.11
TPM3-220ENST00000509601 KRTAP3-3Q9BYR6 98 aa8.11□□□□□ -1.11
TPM3-220ENST00000509601 MT1BP07438 61 aa8.08□□□□□ -1.12
TPM3-220ENST00000509601 SPRR2GQ9BYE4 73 aa8.07□□□□□ -1.12
TPM3-220ENST00000509601 KRTAP19-8Q3LI54 63 aa8.05□□□□□ -1.12
TPM3-220ENST00000509601 KRTAP6-3Q3LI67 103 aa8.05□□□□□ -1.12
TPM3-220ENST00000509601 A0A087WVE0 104 aa8.04□□□□□ -1.12
TPM3-220ENST00000509601 ACYP1P07311 99 aa8.04□□□□□ -1.12
TPM3-220ENST00000509601 TRAV22A0A0B4J277 110 aa8.01□□□□□ -1.13
TPM3-220ENST00000509601 LOC101927531A0A1B0GV80 90 aa8□□□□□ -1.13
TPM3-220ENST00000509601 KLKP1Q107X0 134 aa8□□□□□ -1.13
TPM3-220ENST00000509601 Q5VV11 94 aa8□□□□□ -1.13
TPM3-220ENST00000509601 FAM240AA0A1B0GVK7 77 aa7.98□□□□□ -1.13
TPM3-220ENST00000509601 A6NN06 94 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms