RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 TAX1BP3O14907 124 aa5.79□□□□□ -1.48
HMGCS1-204ENST00000507293 MT2AP02795 61 aa5.79□□□□□ -1.48
HMGCS1-204ENST00000507293 NOTCH2NLQ7Z3S9 236 aa5.79□□□□□ -1.48
HMGCS1-204ENST00000507293 TRBV7-4A0A0J9YYF1 115 aa5.78□□□□□ -1.48
HMGCS1-204ENST00000507293 HRES1P13985 223 aa5.77□□□□□ -1.49
HMGCS1-204ENST00000507293 RBM3P98179 157 aaKnown RBP5.77□□□□□ -1.49
HMGCS1-204ENST00000507293 DEFB116Q30KQ4 102 aa5.77□□□□□ -1.49
HMGCS1-204ENST00000507293 COL5A1-AS1Q5SY13 56 aa5.77□□□□□ -1.49
HMGCS1-204ENST00000507293 USH2AO75445 5202 aa5.77□□□□□ -1.49
HMGCS1-204ENST00000507293 SSPOA2VEC9 5147 aa5.76□□□□□ -1.49
HMGCS1-204ENST00000507293 A0A1W2PPM0 123 aa5.76□□□□□ -1.49
HMGCS1-204ENST00000507293 KRTAP9-7A8MTY7 169 aa5.76□□□□□ -1.49
HMGCS1-204ENST00000507293 DSCR8Q96T75 97 aa5.76□□□□□ -1.49
HMGCS1-204ENST00000507293 RBM12B-AS1Q9P1G2 102 aa5.76□□□□□ -1.49
HMGCS1-204ENST00000507293 MT1FP04733 61 aa5.75□□□□□ -1.49
HMGCS1-204ENST00000507293 CCKP06307 115 aa5.75□□□□□ -1.49
HMGCS1-204ENST00000507293 MPLKIPQ8TAP9 179 aa5.75□□□□□ -1.49
HMGCS1-204ENST00000507293 LINC00472Q9H8W2 130 aa5.75□□□□□ -1.49
HMGCS1-204ENST00000507293 IGHV6-1A0A0B4J1U7 121 aa5.74□□□□□ -1.49
HMGCS1-204ENST00000507293 PCP4L1A6NKN8 68 aa5.74□□□□□ -1.49
HMGCS1-204ENST00000507293 C9JAW5 83 aa5.74□□□□□ -1.49
HMGCS1-204ENST00000507293 JMJD7-PLA2G4BH0Y9G9 81 aa5.74□□□□□ -1.49
HMGCS1-204ENST00000507293 C21orf62-AS1Q17RA5 79 aa5.72□□□□□ -1.49
HMGCS1-204ENST00000507293 LCE2BO14633 110 aa5.71□□□□□ -1.5
HMGCS1-204ENST00000507293 H3BT86 120 aa5.7□□□□□ -1.5
HMGCS1-204ENST00000507293 PDE6GP18545 87 aa5.7□□□□□ -1.5
HMGCS1-204ENST00000507293 KRTAP10-10P60014 251 aa5.7□□□□□ -1.5
HMGCS1-204ENST00000507293 VPS25Q9BRG1 176 aa5.7□□□□□ -1.5
HMGCS1-204ENST00000507293 SPCS1Q9Y6A9 102 aa5.7□□□□□ -1.5
HMGCS1-204ENST00000507293 A0A1B0GVX0 72 aa5.69□□□□□ -1.5
HMGCS1-204ENST00000507293 C8orf87E5RJ46 101 aa5.69□□□□□ -1.5
HMGCS1-204ENST00000507293 KRTAP9-3Q9BYQ3 159 aa5.69□□□□□ -1.5
HMGCS1-204ENST00000507293 KRTAP19-1Q8IUB9 90 aa5.68□□□□□ -1.5
HMGCS1-204ENST00000507293 LOC110117498A0A087WWA1 95 aa5.67□□□□□ -1.5
HMGCS1-204ENST00000507293 A0A1B0GW54 56 aa5.67□□□□□ -1.5
HMGCS1-204ENST00000507293 Q6ZQT0 140 aa5.66□□□□□ -1.5
HMGCS1-204ENST00000507293 ZCCHC13Q8WW36 166 aaKnown RBP5.66□□□□□ -1.5
HMGCS1-204ENST00000507293 MTURNQ8N3F0 131 aa5.65□□□□□ -1.5
HMGCS1-204ENST00000507293 C14orf132Q9NPU4 83 aa5.65□□□□□ -1.5
HMGCS1-204ENST00000507293 K7EP34 96 aa5.64□□□□□ -1.51
HMGCS1-204ENST00000507293 GTF2H5Q6ZYL4 71 aa5.64□□□□□ -1.51
HMGCS1-204ENST00000507293 J3KT08 172 aa5.63□□□□□ -1.51
HMGCS1-204ENST00000507293 SPINK7P58062 85 aa5.63□□□□□ -1.51
HMGCS1-204ENST00000507293 FCGBPQ9Y6R7 5405 aaPredicted RBP5.62□□□□□ -1.51
HMGCS1-204ENST00000507293 Q8N9P0 234 aaPredicted RBP5.59□□□□□ -1.51
HMGCS1-204ENST00000507293 NDUFB1O75438 58 aa5.58□□□□□ -1.52
HMGCS1-204ENST00000507293 SMCPP49901 116 aaPredicted RBP5.58□□□□□ -1.52
HMGCS1-204ENST00000507293 NREPQ16612 68 aa5.58□□□□□ -1.52
HMGCS1-204ENST00000507293 WFDC13Q8IUB5 93 aa5.58□□□□□ -1.52
HMGCS1-204ENST00000507293 PRO0461Q9UI25 63 aa5.58□□□□□ -1.52
HMGCS1-204ENST00000507293 F8W1H4 67 aa5.57□□□□□ -1.52
HMGCS1-204ENST00000507293 C8orf17Q9NRJ1 99 aa5.57□□□□□ -1.52
HMGCS1-204ENST00000507293 MACF1Q9UPN3 7388 aaKnown RBP5.57□□□□□ -1.52
HMGCS1-204ENST00000507293 A8MWP4 228 aa5.55□□□□□ -1.52
HMGCS1-204ENST00000507293 IGKV3D-7A0A0C4DH55 119 aa5.54□□□□□ -1.52
HMGCS1-204ENST00000507293 LINC00846Q9NV44 126 aa5.53□□□□□ -1.52
HMGCS1-204ENST00000507293 SYNE2Q8WXH0 6885 aaKnown RBP5.52□□□□□ -1.53
HMGCS1-204ENST00000507293 KRTAP19-6Q3LI70 58 aa5.52□□□□□ -1.53
HMGCS1-204ENST00000507293 Q6ZVQ6 151 aa5.51□□□□□ -1.53
HMGCS1-204ENST00000507293 ETDBQ3ZM63 59 aa5.49□□□□□ -1.53
HMGCS1-204ENST00000507293 BPY2O14599 106 aa5.48□□□□□ -1.53
HMGCS1-204ENST00000507293 PRR15Q8IV56 129 aa5.48□□□□□ -1.53
HMGCS1-204ENST00000507293 UBL5Q9BZL1 73 aa5.48□□□□□ -1.53
HMGCS1-204ENST00000507293 MMP24-AS1A0A0U1RRL7 71 aa5.47□□□□□ -1.53
HMGCS1-204ENST00000507293 TMEM254Q8TBM7 123 aa5.46□□□□□ -1.54
HMGCS1-204ENST00000507293 MRPL34Q9BQ48 92 aaKnown RBP5.46□□□□□ -1.54
HMGCS1-204ENST00000507293 H1FX-AS1Q4G0G2 97 aa5.45□□□□□ -1.54
HMGCS1-204ENST00000507293 NDUFS5O43920 106 aa5.43□□□□□ -1.54
HMGCS1-204ENST00000507293 A0A1B0GV90 55 aa5.42□□□□□ -1.54
HMGCS1-204ENST00000507293 hDV103S1A0JD37 113 aa5.42□□□□□ -1.54
HMGCS1-204ENST00000507293 K7EQZ3 153 aa5.42□□□□□ -1.54
HMGCS1-204ENST00000507293 ACYP1P07311 99 aa5.4□□□□□ -1.54
HMGCS1-204ENST00000507293 IGKV2D-30A0A075B6S6 120 aa5.39□□□□□ -1.55
HMGCS1-204ENST00000507293 IGKV2-30P06310 120 aa5.39□□□□□ -1.55
HMGCS1-204ENST00000507293 C7orf65Q6ZTY9 151 aa5.38□□□□□ -1.55
HMGCS1-204ENST00000507293 Q5W150 140 aa5.37□□□□□ -1.55
HMGCS1-204ENST00000507293 FAM240AA0A1B0GVK7 77 aa5.36□□□□□ -1.55
HMGCS1-204ENST00000507293 CXCL6P80162 114 aa5.36□□□□□ -1.55
HMGCS1-204ENST00000507293 CASC2Q6XLA1 102 aa5.36□□□□□ -1.55
HMGCS1-204ENST00000507293 Q8N9L7 120 aa5.36□□□□□ -1.55
HMGCS1-204ENST00000507293 KRTAP6-3Q3LI67 103 aa5.35□□□□□ -1.55
HMGCS1-204ENST00000507293 HCG22E2RYF7 251 aa5.32□□□□□ -1.56
HMGCS1-204ENST00000507293 C4orf26Q17RF5 130 aa5.32□□□□□ -1.56
HMGCS1-204ENST00000507293 ATP5EP2Q5VTU8 51 aa5.31□□□□□ -1.56
HMGCS1-204ENST00000507293 J3QR89 54 aa5.29□□□□□ -1.56
HMGCS1-204ENST00000507293 C5orf47Q569G3 176 aa5.27□□□□□ -1.57
HMGCS1-204ENST00000507293 FAM236AA0A1B0GUQ0 79 aa5.26□□□□□ -1.57
HMGCS1-204ENST00000507293 FAM236BA0A1B0GV22 79 aa5.26□□□□□ -1.57
HMGCS1-204ENST00000507293 LINC00643Q86TS7 51 aa5.26□□□□□ -1.57
HMGCS1-204ENST00000507293 TP53AIP1Q9HCN2 124 aa5.25□□□□□ -1.57
HMGCS1-204ENST00000507293 HIST1H4AP62805 103 aaKnown RBP5.24□□□□□ -1.57
HMGCS1-204ENST00000507293 MT1BP07438 61 aa5.23□□□□□ -1.57
HMGCS1-204ENST00000507293 KRTAP3-1Q9BYR8 98 aa5.23□□□□□ -1.57
HMGCS1-204ENST00000507293 S4R3F8 94 aa5.23□□□□□ -1.57
HMGCS1-204ENST00000507293 NEBP20929 6669 aa5.22□□□□□ -1.57
HMGCS1-204ENST00000507293 A6NN06 94 aa5.22□□□□□ -1.57
HMGCS1-204ENST00000507293 Q5VV11 94 aa5.21□□□□□ -1.58
HMGCS1-204ENST00000507293 KRTAP19-8Q3LI54 63 aa5.19□□□□□ -1.58
HMGCS1-204ENST00000507293 CSAG1Q6PB30 78 aa5.19□□□□□ -1.58
HMGCS1-204ENST00000507293 LCA10Q71F78 164 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms