RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 DEFB116Q30KQ4 102 aa7.28□□□□□ -1.24
HMGCS1-203ENST00000507004 MTURNQ8N3F0 131 aa7.28□□□□□ -1.24
HMGCS1-203ENST00000507004 A0A1B0GW54 56 aa7.27□□□□□ -1.25
HMGCS1-203ENST00000507004 C9JAW5 83 aa7.27□□□□□ -1.25
HMGCS1-203ENST00000507004 NOTCH2NLQ7Z3S9 236 aa7.26□□□□□ -1.25
HMGCS1-203ENST00000507004 NDUFB1O75438 58 aa7.25□□□□□ -1.25
HMGCS1-203ENST00000507004 BAALC-AS2P0C853 105 aa7.25□□□□□ -1.25
HMGCS1-203ENST00000507004 MPLKIPQ8TAP9 179 aa7.25□□□□□ -1.25
HMGCS1-203ENST00000507004 KRTAP9-8Q9BYQ0 159 aa7.25□□□□□ -1.25
HMGCS1-203ENST00000507004 JMJD7-PLA2G4BH0Y9G9 81 aa7.24□□□□□ -1.25
HMGCS1-203ENST00000507004 HRES1P13985 223 aa7.24□□□□□ -1.25
HMGCS1-203ENST00000507004 M0R143 59 aa7.22□□□□□ -1.25
HMGCS1-203ENST00000507004 PDE6GP18545 87 aa7.22□□□□□ -1.25
HMGCS1-203ENST00000507004 Q6ZQT0 140 aa7.22□□□□□ -1.25
HMGCS1-203ENST00000507004 ATXN8Q156A1 80 aa7.21□□□□□ -1.26
HMGCS1-203ENST00000507004 ZCCHC13Q8WW36 166 aaKnown RBP7.21□□□□□ -1.26
HMGCS1-203ENST00000507004 LOC110117498A0A087WWA1 95 aa7.17□□□□□ -1.26
HMGCS1-203ENST00000507004 LYRM7Q5U5X0 104 aa7.17□□□□□ -1.26
HMGCS1-203ENST00000507004 Q8N9P0 234 aaPredicted RBP7.17□□□□□ -1.26
HMGCS1-203ENST00000507004 TMA7Q9Y2S6 64 aaKnown RBP7.17□□□□□ -1.26
HMGCS1-203ENST00000507004 A8MWP4 228 aa7.15□□□□□ -1.26
HMGCS1-203ENST00000507004 SPINK7P58062 85 aa7.15□□□□□ -1.26
HMGCS1-203ENST00000507004 MT2AP02795 61 aa7.14□□□□□ -1.27
HMGCS1-203ENST00000507004 C8orf17Q9NRJ1 99 aa7.13□□□□□ -1.27
HMGCS1-203ENST00000507004 KRTAP10-10P60014 251 aa7.09□□□□□ -1.27
HMGCS1-203ENST00000507004 NREPQ16612 68 aa7.08□□□□□ -1.28
HMGCS1-203ENST00000507004 Q6ZVQ6 151 aa7.08□□□□□ -1.28
HMGCS1-203ENST00000507004 IGKV3D-7A0A0C4DH55 119 aa7.07□□□□□ -1.28
HMGCS1-203ENST00000507004 SMCPP49901 116 aaPredicted RBP7.07□□□□□ -1.28
HMGCS1-203ENST00000507004 PRR15Q8IV56 129 aa7.07□□□□□ -1.28
HMGCS1-203ENST00000507004 MT1FP04733 61 aa7.06□□□□□ -1.28
HMGCS1-203ENST00000507004 C14orf132Q9NPU4 83 aa7.06□□□□□ -1.28
HMGCS1-203ENST00000507004 SMIM6P0DI80 62 aa7.05□□□□□ -1.28
HMGCS1-203ENST00000507004 USH2AO75445 5202 aa7.05□□□□□ -1.28
HMGCS1-203ENST00000507004 WFDC13Q8IUB5 93 aa7.04□□□□□ -1.28
HMGCS1-203ENST00000507004 TMEM254Q8TBM7 123 aa7.04□□□□□ -1.28
HMGCS1-203ENST00000507004 NAA38Q9BRA0 125 aaKnown RBP7.04□□□□□ -1.28
HMGCS1-203ENST00000507004 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.03□□□□□ -1.28
HMGCS1-203ENST00000507004 MRPL34Q9BQ48 92 aaKnown RBP7.03□□□□□ -1.28
HMGCS1-203ENST00000507004 KRTAP9-3Q9BYQ3 159 aa7.03□□□□□ -1.28
HMGCS1-203ENST00000507004 LINC00846Q9NV44 126 aa7.03□□□□□ -1.28
HMGCS1-203ENST00000507004 SSPOA2VEC9 5147 aa7.02□□□□□ -1.29
HMGCS1-203ENST00000507004 TSTD3H0UI37 97 aa7.01□□□□□ -1.29
HMGCS1-203ENST00000507004 H3BT86 120 aa7□□□□□ -1.29
HMGCS1-203ENST00000507004 KRTAP9-7A8MTY7 169 aa6.99□□□□□ -1.29
HMGCS1-203ENST00000507004 MMP24-AS1A0A0U1RRL7 71 aa6.98□□□□□ -1.29
HMGCS1-203ENST00000507004 hDV103S1A0JD37 113 aa6.98□□□□□ -1.29
HMGCS1-203ENST00000507004 NDUFS5O43920 106 aa6.95□□□□□ -1.3
HMGCS1-203ENST00000507004 BPY2O14599 106 aa6.94□□□□□ -1.3
HMGCS1-203ENST00000507004 BATFQ16520 125 aa6.94□□□□□ -1.3
HMGCS1-203ENST00000507004 KRTAP19-1Q8IUB9 90 aa6.94□□□□□ -1.3
HMGCS1-203ENST00000507004 C9orf118A6NHY6 69 aa6.93□□□□□ -1.3
HMGCS1-203ENST00000507004 K7EQZ3 153 aa6.93□□□□□ -1.3
HMGCS1-203ENST00000507004 H1FX-AS1Q4G0G2 97 aa6.93□□□□□ -1.3
HMGCS1-203ENST00000507004 A0A1W2PPM0 123 aa6.9□□□□□ -1.3
HMGCS1-203ENST00000507004 C7orf65Q6ZTY9 151 aa6.9□□□□□ -1.3
HMGCS1-203ENST00000507004 FCGBPQ9Y6R7 5405 aaPredicted RBP6.89□□□□□ -1.31
HMGCS1-203ENST00000507004 LOC100996750A0A140TA64 210 aa6.87□□□□□ -1.31
HMGCS1-203ENST00000507004 KRTAP4-6Q9BYQ5 205 aa6.87□□□□□ -1.31
HMGCS1-203ENST00000507004 IGKV2D-30A0A075B6S6 120 aa6.86□□□□□ -1.31
HMGCS1-203ENST00000507004 IGKV2-30P06310 120 aa6.86□□□□□ -1.31
HMGCS1-203ENST00000507004 TAX1BP3O14907 124 aa6.85□□□□□ -1.31
HMGCS1-203ENST00000507004 CASC2Q6XLA1 102 aa6.85□□□□□ -1.31
HMGCS1-203ENST00000507004 KRTAP19-6Q3LI70 58 aa6.84□□□□□ -1.31
HMGCS1-203ENST00000507004 CXCL6P80162 114 aa6.83□□□□□ -1.32
HMGCS1-203ENST00000507004 HCG22E2RYF7 251 aa6.81□□□□□ -1.32
HMGCS1-203ENST00000507004 Q5W150 140 aa6.8□□□□□ -1.32
HMGCS1-203ENST00000507004 UBL5Q9BZL1 73 aa6.8□□□□□ -1.32
HMGCS1-203ENST00000507004 SPCS1Q9Y6A9 102 aa6.8□□□□□ -1.32
HMGCS1-203ENST00000507004 Q8N9L7 120 aa6.76□□□□□ -1.33
HMGCS1-203ENST00000507004 C4orf26Q17RF5 130 aa6.73□□□□□ -1.33
HMGCS1-203ENST00000507004 MACF1Q9UPN3 7388 aaKnown RBP6.73□□□□□ -1.33
HMGCS1-203ENST00000507004 COL5A1-AS1Q5SY13 56 aa6.71□□□□□ -1.34
HMGCS1-203ENST00000507004 LOC105371267A0A1B0GV96 52 aa6.7□□□□□ -1.34
HMGCS1-203ENST00000507004 TP53AIP1Q9HCN2 124 aa6.7□□□□□ -1.34
HMGCS1-203ENST00000507004 K7EP34 96 aa6.66□□□□□ -1.34
HMGCS1-203ENST00000507004 CSAG1Q6PB30 78 aa6.66□□□□□ -1.34
HMGCS1-203ENST00000507004 PRO0461Q9UI25 63 aa6.66□□□□□ -1.34
HMGCS1-203ENST00000507004 SYNE2Q8WXH0 6885 aaKnown RBP6.65□□□□□ -1.34
HMGCS1-203ENST00000507004 S4R3F8 94 aa6.65□□□□□ -1.34
HMGCS1-203ENST00000507004 FAM236AA0A1B0GUQ0 79 aa6.64□□□□□ -1.35
HMGCS1-203ENST00000507004 FAM236BA0A1B0GV22 79 aa6.64□□□□□ -1.35
HMGCS1-203ENST00000507004 C5orf47Q569G3 176 aa6.64□□□□□ -1.35
HMGCS1-203ENST00000507004 C1orf64Q8NEQ6 169 aa6.63□□□□□ -1.35
HMGCS1-203ENST00000507004 GTF2H5Q6ZYL4 71 aa6.62□□□□□ -1.35
HMGCS1-203ENST00000507004 F8W1H4 67 aa6.59□□□□□ -1.35
HMGCS1-203ENST00000507004 KRTAP6-3Q3LI67 103 aa6.59□□□□□ -1.35
HMGCS1-203ENST00000507004 KRTAP3-1Q9BYR8 98 aa6.59□□□□□ -1.35
HMGCS1-203ENST00000507004 Q5VV11 94 aa6.55□□□□□ -1.36
HMGCS1-203ENST00000507004 LCA10Q71F78 164 aa6.55□□□□□ -1.36
HMGCS1-203ENST00000507004 SPRR2GQ9BYE4 73 aa6.53□□□□□ -1.36
HMGCS1-203ENST00000507004 LOC101927531A0A1B0GV80 90 aa6.51□□□□□ -1.37
HMGCS1-203ENST00000507004 A6NN06 94 aa6.51□□□□□ -1.37
HMGCS1-203ENST00000507004 ETDBQ3ZM63 59 aa6.51□□□□□ -1.37
HMGCS1-203ENST00000507004 KLKP1Q107X0 134 aa6.5□□□□□ -1.37
HMGCS1-203ENST00000507004 KRTAP19-8Q3LI54 63 aa6.5□□□□□ -1.37
HMGCS1-203ENST00000507004 CYP4F30PQ9H0H9 118 aa6.5□□□□□ -1.37
HMGCS1-203ENST00000507004 TRAV22A0A0B4J277 110 aa6.49□□□□□ -1.37
HMGCS1-203ENST00000507004 ACYP1P07311 99 aa6.49□□□□□ -1.37
HMGCS1-203ENST00000507004 CRIPTQ9P021 101 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms