RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 HRCT1Q6UXD1 115 aa4.73□□□□□ -1.65
PDGFC-205ENST00000506880 CDIP1Q9H305 208 aa4.72□□□□□ -1.65
PDGFC-205ENST00000506880 HMCN2Q8NDA2 5059 aa4.72□□□□□ -1.65
PDGFC-205ENST00000506880 RETNLBQ9BQ08 111 aa4.71□□□□□ -1.66
PDGFC-205ENST00000506880 PRO0461Q9UI25 63 aa4.7□□□□□ -1.66
PDGFC-205ENST00000506880 SEC61BP60468 96 aaKnown RBP4.69□□□□□ -1.66
PDGFC-205ENST00000506880 LINC00472Q9H8W2 130 aa4.69□□□□□ -1.66
PDGFC-205ENST00000506880 C8orf87E5RJ46 101 aa4.68□□□□□ -1.66
PDGFC-205ENST00000506880 Q96NJ1 140 aa4.68□□□□□ -1.66
PDGFC-205ENST00000506880 C14orf132Q9NPU4 83 aa4.68□□□□□ -1.66
PDGFC-205ENST00000506880 LRP2P98164 4655 aa4.68□□□□□ -1.66
PDGFC-205ENST00000506880 A0A0G2JQZ4 141 aa4.67□□□□□ -1.66
PDGFC-205ENST00000506880 NDUFB1O75438 58 aa4.67□□□□□ -1.66
PDGFC-205ENST00000506880 VPS25Q9BRG1 176 aa4.66□□□□□ -1.66
PDGFC-205ENST00000506880 ACYP1P07311 99 aa4.65□□□□□ -1.67
PDGFC-205ENST00000506880 NREPQ16612 68 aa4.65□□□□□ -1.67
PDGFC-205ENST00000506880 FAM240AA0A1B0GVK7 77 aa4.64□□□□□ -1.67
PDGFC-205ENST00000506880 IGKV4-1P06312 121 aa4.64□□□□□ -1.67
PDGFC-205ENST00000506880 Q75L30 129 aa4.64□□□□□ -1.67
PDGFC-205ENST00000506880 A0A0U1RQV1 116 aa4.63□□□□□ -1.67
PDGFC-205ENST00000506880 A8MWP4 228 aa4.63□□□□□ -1.67
PDGFC-205ENST00000506880 SIGMAR1Q99720 223 aa4.63□□□□□ -1.67
PDGFC-205ENST00000506880 UBL5Q9BZL1 73 aa4.63□□□□□ -1.67
PDGFC-205ENST00000506880 A0A1B0GV72 72 aa4.62□□□□□ -1.67
PDGFC-205ENST00000506880 A0A1B0GVX0 72 aa4.62□□□□□ -1.67
PDGFC-205ENST00000506880 LINC00313P59037 77 aa4.62□□□□□ -1.67
PDGFC-205ENST00000506880 LCE4AQ5TA78 99 aa4.62□□□□□ -1.67
PDGFC-205ENST00000506880 C20orf166-AS1Q96NR2 134 aa4.62□□□□□ -1.67
PDGFC-205ENST00000506880 RPL37P61927 97 aaKnown RBP4.61□□□□□ -1.67
PDGFC-205ENST00000506880 MTURNQ8N3F0 131 aa4.61□□□□□ -1.67
PDGFC-205ENST00000506880 ETDBQ3ZM63 59 aa4.6□□□□□ -1.67
PDGFC-205ENST00000506880 A8MUU9 505 aa4.59□□□□□ -1.67
PDGFC-205ENST00000506880 BPY2O14599 106 aa4.59□□□□□ -1.67
PDGFC-205ENST00000506880 PRR15Q8IV56 129 aa4.59□□□□□ -1.67
PDGFC-205ENST00000506880 LPAP08519 4548 aa4.58□□□□□ -1.68
PDGFC-205ENST00000506880 J3QR89 54 aa4.58□□□□□ -1.68
PDGFC-205ENST00000506880 CXCL6P80162 114 aa4.58□□□□□ -1.68
PDGFC-205ENST00000506880 LCE5AQ5TCM9 118 aa4.58□□□□□ -1.68
PDGFC-205ENST00000506880 Q6ZVQ6 151 aa4.58□□□□□ -1.68
PDGFC-205ENST00000506880 C9orf92A6NGG3 77 aa4.57□□□□□ -1.68
PDGFC-205ENST00000506880 ATP5EP2Q5VTU8 51 aa4.57□□□□□ -1.68
PDGFC-205ENST00000506880 ATP11AUNQ6ZP68 121 aa4.57□□□□□ -1.68
PDGFC-205ENST00000506880 RNF213Q63HN8 5207 aa4.56□□□□□ -1.68
PDGFC-205ENST00000506880 IGHV6-1A0A0B4J1U7 121 aa4.55□□□□□ -1.68
PDGFC-205ENST00000506880 Q8N9P0 234 aaPredicted RBP4.55□□□□□ -1.68
PDGFC-205ENST00000506880 LINC00846Q9NV44 126 aa4.55□□□□□ -1.68
PDGFC-205ENST00000506880 IGKV3D-7A0A0C4DH55 119 aa4.54□□□□□ -1.68
PDGFC-205ENST00000506880 KRTAP16-1A8MUX0 517 aa4.54□□□□□ -1.68
PDGFC-205ENST00000506880 TMEM254Q8TBM7 123 aa4.54□□□□□ -1.68
PDGFC-205ENST00000506880 C8orf17Q9NRJ1 99 aa4.54□□□□□ -1.68
PDGFC-205ENST00000506880 A0A1B0GV90 55 aa4.53□□□□□ -1.68
PDGFC-205ENST00000506880 DSCR10P59022 87 aa4.53□□□□□ -1.68
PDGFC-205ENST00000506880 MUC17Q685J3 4493 aa4.52□□□□□ -1.69
PDGFC-205ENST00000506880 hDV103S1A0JD37 113 aa4.51□□□□□ -1.69
PDGFC-205ENST00000506880 DEFB116Q30KQ4 102 aa4.51□□□□□ -1.69
PDGFC-205ENST00000506880 SVIPQ8NHG7 77 aa4.51□□□□□ -1.69
PDGFC-205ENST00000506880 PCOTHQ58A44 107 aa4.5□□□□□ -1.69
PDGFC-205ENST00000506880 MRPL34Q9BQ48 92 aaKnown RBP4.5□□□□□ -1.69
PDGFC-205ENST00000506880 MMP24-AS1A0A0U1RRL7 71 aa4.49□□□□□ -1.69
PDGFC-205ENST00000506880 K7EQZ3 153 aa4.49□□□□□ -1.69
PDGFC-205ENST00000506880 LINC00643Q86TS7 51 aa4.49□□□□□ -1.69
PDGFC-205ENST00000506880 KRTAP9-7A8MTY7 169 aa4.47□□□□□ -1.69
PDGFC-205ENST00000506880 ZCCHC13Q8WW36 166 aaKnown RBP4.47□□□□□ -1.69
PDGFC-205ENST00000506880 TP53AIP1Q9HCN2 124 aa4.47□□□□□ -1.69
PDGFC-205ENST00000506880 HCG22E2RYF7 251 aa4.46□□□□□ -1.7
PDGFC-205ENST00000506880 CASC2Q6XLA1 102 aa4.46□□□□□ -1.7
PDGFC-205ENST00000506880 NOTCH2NLQ7Z3S9 236 aa4.46□□□□□ -1.7
PDGFC-205ENST00000506880 K7ERU9 68 aa4.45□□□□□ -1.7
PDGFC-205ENST00000506880 KRTAP19-4Q3LI73 84 aa4.44□□□□□ -1.7
PDGFC-205ENST00000506880 WFDC13Q8IUB5 93 aa4.44□□□□□ -1.7
PDGFC-205ENST00000506880 IMUPQ9GZP8 106 aa4.42□□□□□ -1.7
PDGFC-205ENST00000506880 RBM12B-AS1Q9P1G2 102 aa4.4□□□□□ -1.71
PDGFC-205ENST00000506880 MUC2Q02817 5179 aa4.39□□□□□ -1.71
PDGFC-205ENST00000506880 NDUFS5O43920 106 aa4.39□□□□□ -1.71
PDGFC-205ENST00000506880 Q8N9L7 120 aa4.38□□□□□ -1.71
PDGFC-205ENST00000506880 KRTAP4-1Q9BYQ7 146 aa4.38□□□□□ -1.71
PDGFC-205ENST00000506880 C7orf65Q6ZTY9 151 aa4.37□□□□□ -1.71
PDGFC-205ENST00000506880 MPLKIPQ8TAP9 179 aa4.37□□□□□ -1.71
PDGFC-205ENST00000506880 ATOX1O00244 68 aa4.36□□□□□ -1.71
PDGFC-205ENST00000506880 SPINK7P58062 85 aa4.36□□□□□ -1.71
PDGFC-205ENST00000506880 HIST1H4AP62805 103 aaKnown RBP4.36□□□□□ -1.71
PDGFC-205ENST00000506880 UQCRQO14949 82 aa4.35□□□□□ -1.71
PDGFC-205ENST00000506880 H3BS24 57 aa4.34□□□□□ -1.71
PDGFC-205ENST00000506880 COX6B2Q6YFQ2 88 aa4.34□□□□□ -1.71
PDGFC-205ENST00000506880 FLGP20930 4061 aaPredicted RBP4.34□□□□□ -1.72
PDGFC-205ENST00000506880 FAT4Q6V0I7 4981 aa4.34□□□□□ -1.72
PDGFC-205ENST00000506880 HRES1P13985 223 aa4.33□□□□□ -1.72
PDGFC-205ENST00000506880 KRTAP19-2Q3LHN2 52 aa4.33□□□□□ -1.72
PDGFC-205ENST00000506880 SMIM20Q8N5G0 67 aa4.33□□□□□ -1.72
PDGFC-205ENST00000506880 TRAV22A0A0B4J277 110 aa4.32□□□□□ -1.72
PDGFC-205ENST00000506880 H3BPC8 53 aa4.32□□□□□ -1.72
PDGFC-205ENST00000506880 LOC101927531A0A1B0GV80 90 aa4.31□□□□□ -1.72
PDGFC-205ENST00000506880 Q5W150 140 aa4.3□□□□□ -1.72
PDGFC-205ENST00000506880 KRTAP9-3Q9BYQ3 159 aa4.3□□□□□ -1.72
PDGFC-205ENST00000506880 FSIP2Q5CZC0 6907 aa4.3□□□□□ -1.72
PDGFC-205ENST00000506880 IGKV2-30P06310 120 aa4.29□□□□□ -1.72
PDGFC-205ENST00000506880 C5orf47Q569G3 176 aa4.29□□□□□ -1.72
PDGFC-205ENST00000506880 FAM236DA0A1B0GTK5 79 aa4.28□□□□□ -1.72
PDGFC-205ENST00000506880 FAM236CP0DP71 79 aa4.28□□□□□ -1.72
PDGFC-205ENST00000506880 MP68P56378 58 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 285.4 ms