RNA–Protein interactions for RNA: ENST00000504131.6

CLCN3-204, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 5 BASIC

Gene CLCN3, Length 5,592 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-204ENST00000504131 HRNRQ86YZ3 2850 aaPredicted RBP3.41□□□□□ -1.86
CLCN3-204ENST00000504131 GCN1Q92616 2671 aaKnown RBP3.41□□□□□ -1.86
CLCN3-204ENST00000504131 CHD6Q8TD26 2715 aa3.41□□□□□ -1.86
CLCN3-204ENST00000504131 NBEAQ8NFP9 2946 aa3.41□□□□□ -1.86
CLCN3-204ENST00000504131 M0R2T5 61 aa3.4□□□□□ -1.86
CLCN3-204ENST00000504131 VPS13CQ709C8 3753 aa3.4□□□□□ -1.87
CLCN3-204ENST00000504131 IGSF10Q6WRI0 2623 aa3.39□□□□□ -1.87
CLCN3-204ENST00000504131 TEP1Q99973 2627 aaKnown RBP3.39□□□□□ -1.87
CLCN3-204ENST00000504131 ZZEF1O43149 2961 aa3.39□□□□□ -1.87
CLCN3-204ENST00000504131 SPRR1AP35321 89 aa3.39□□□□□ -1.87
CLCN3-204ENST00000504131 DCHS2Q6V1P9 2916 aa3.39□□□□□ -1.87
CLCN3-204ENST00000504131 C9orf92A6NGG3 77 aa3.38□□□□□ -1.87
CLCN3-204ENST00000504131 STAB1Q9NY15 2570 aa3.38□□□□□ -1.87
CLCN3-204ENST00000504131 KRTAP10-8P60410 259 aa3.36□□□□□ -1.87
CLCN3-204ENST00000504131 COL6A5A8TX70 2615 aa3.36□□□□□ -1.87
CLCN3-204ENST00000504131 SMG1Q96Q15 3661 aaKnown RBP3.36□□□□□ -1.87
CLCN3-204ENST00000504131 SPRR1BP22528 89 aa3.35□□□□□ -1.87
CLCN3-204ENST00000504131 SMR3BP02814 79 aaPredicted RBP3.34□□□□□ -1.87
CLCN3-204ENST00000504131 DNAH3Q8TD57 4116 aa3.34□□□□□ -1.88
CLCN3-204ENST00000504131 RELNP78509 3460 aa3.33□□□□□ -1.88
CLCN3-204ENST00000504131 Q6ZRN7 208 aaPredicted RBP3.3□□□□□ -1.88
CLCN3-204ENST00000504131 ZNF469Q96JG9 3925 aaPredicted RBP3.3□□□□□ -1.88
CLCN3-204ENST00000504131 DSPP15924 2871 aaKnown RBP3.3□□□□□ -1.88
CLCN3-204ENST00000504131 BOD1L1Q8NFC6 3051 aa3.3□□□□□ -1.88
CLCN3-204ENST00000504131 PDZD2O15018 2839 aa3.3□□□□□ -1.88
CLCN3-204ENST00000504131 ANK3Q12955 4377 aaKnown RBP3.3□□□□□ -1.88
CLCN3-204ENST00000504131 Q5VSD8 79 aa3.28□□□□□ -1.88
CLCN3-204ENST00000504131 FBN2P35556 2912 aa3.28□□□□□ -1.88
CLCN3-204ENST00000504131 ANK2Q01484 3957 aa3.28□□□□□ -1.88
CLCN3-204ENST00000504131 CMYA5Q8N3K9 4069 aa3.28□□□□□ -1.88
CLCN3-204ENST00000504131 MGAQ8IWI9 3026 aa3.28□□□□□ -1.88
CLCN3-204ENST00000504131 M0QZ58 72 aa3.27□□□□□ -1.89
CLCN3-204ENST00000504131 NBPF19A0A087WUL8 3843 aa3.27□□□□□ -1.89
CLCN3-204ENST00000504131 TEX15Q9BXT5 2789 aa3.26□□□□□ -1.89
CLCN3-204ENST00000504131 CELSR1Q9NYQ6 3014 aa3.25□□□□□ -1.89
CLCN3-204ENST00000504131 CELSR2Q9HCU4 2923 aa3.25□□□□□ -1.89
CLCN3-204ENST00000504131 ADGRG4Q8IZF6 3080 aa3.24□□□□□ -1.89
CLCN3-204ENST00000504131 TENM4Q6N022 2769 aa3.24□□□□□ -1.89
CLCN3-204ENST00000504131 DMBT1Q9UGM3 2413 aaPredicted RBP3.24□□□□□ -1.89
CLCN3-204ENST00000504131 ASH1LQ9NR48 2969 aaKnown RBP3.23□□□□□ -1.89
CLCN3-204ENST00000504131 KRTAP7-1Q8IUC3 87 aa3.23□□□□□ -1.89
CLCN3-204ENST00000504131 NBEAL1Q6ZS30 2694 aa3.23□□□□□ -1.89
CLCN3-204ENST00000504131 NOTCH1P46531 2555 aa3.23□□□□□ -1.89
CLCN3-204ENST00000504131 MAP1AP78559 2803 aaPredicted RBP3.23□□□□□ -1.89
CLCN3-204ENST00000504131 SVEP1Q4LDE5 3571 aa3.22□□□□□ -1.89
CLCN3-204ENST00000504131 KRTAP3-3Q9BYR6 98 aa3.22□□□□□ -1.89
CLCN3-204ENST00000504131 KRTAP3-2Q9BYR7 98 aa3.22□□□□□ -1.89
CLCN3-204ENST00000504131 RPS29P62273 56 aaKnown RBP3.21□□□□□ -1.9
CLCN3-204ENST00000504131 ITPR2Q14571 2701 aa3.2□□□□□ -1.9
CLCN3-204ENST00000504131 CRYBG3Q68DQ2 2970 aa3.2□□□□□ -1.9
CLCN3-204ENST00000504131 LRBAP50851 2863 aa3.19□□□□□ -1.9
CLCN3-204ENST00000504131 HIVEP1P15822 2718 aa3.19□□□□□ -1.9
CLCN3-204ENST00000504131 DYNC2H1Q8NCM8 4307 aaKnown RBP3.18□□□□□ -1.9
CLCN3-204ENST00000504131 CUBNO60494 3623 aa3.18□□□□□ -1.9
CLCN3-204ENST00000504131 CSMD2Q7Z408 3487 aa3.18□□□□□ -1.9
CLCN3-204ENST00000504131 CSMD1Q96PZ7 3565 aa3.18□□□□□ -1.9
CLCN3-204ENST00000504131 KRTAP10-1P60331 282 aa3.17□□□□□ -1.9
CLCN3-204ENST00000504131 NSD1Q96L73 2696 aaPredicted RBP3.17□□□□□ -1.9
CLCN3-204ENST00000504131 TNP1P09430 55 aa3.17□□□□□ -1.9
CLCN3-204ENST00000504131 KRTAP10-2P60368 255 aa3.14□□□□□ -1.91
CLCN3-204ENST00000504131 TACC2O95359 2948 aa3.14□□□□□ -1.91
CLCN3-204ENST00000504131 APCP25054 2843 aa3.14□□□□□ -1.91
CLCN3-204ENST00000504131 FLNCQ14315 2725 aa3.13□□□□□ -1.91
CLCN3-204ENST00000504131 KRTAP12-2P59991 146 aa3.13□□□□□ -1.91
CLCN3-204ENST00000504131 UTP20O75691 2785 aaKnown RBP3.12□□□□□ -1.91
CLCN3-204ENST00000504131 KRTAP1-5Q9BYS1 174 aa3.12□□□□□ -1.91
CLCN3-204ENST00000504131 MXRA5Q9NR99 2828 aa3.12□□□□□ -1.91
CLCN3-204ENST00000504131 DNAH1Q9P2D7 4330 aa3.12□□□□□ -1.91
CLCN3-204ENST00000504131 OTOGQ6ZRI0 2925 aa3.11□□□□□ -1.91
CLCN3-204ENST00000504131 COL12A1Q99715 3063 aa3.1□□□□□ -1.91
CLCN3-204ENST00000504131 XP32Q5T750 250 aa3.09□□□□□ -1.91
CLCN3-204ENST00000504131 STAB2Q8WWQ8 2551 aa3.09□□□□□ -1.91
CLCN3-204ENST00000504131 DNAH6Q9C0G6 4158 aa3.08□□□□□ -1.92
CLCN3-204ENST00000504131 DNAH7Q8WXX0 4024 aa3.08□□□□□ -1.92
CLCN3-204ENST00000504131 KRTAP13-3Q3SY46 172 aa3.07□□□□□ -1.92
CLCN3-204ENST00000504131 KRTAP13-1Q8IUC0 172 aa3.06□□□□□ -1.92
CLCN3-204ENST00000504131 PRKDCP78527 4128 aaKnown RBP3.05□□□□□ -1.92
CLCN3-204ENST00000504131 NBEAL2Q6ZNJ1 2754 aa3.04□□□□□ -1.92
CLCN3-204ENST00000504131 KRTAP12-1P59990 96 aa3.02□□□□□ -1.93
CLCN3-204ENST00000504131 TRRAPQ9Y4A5 3859 aa3.01□□□□□ -1.93
CLCN3-204ENST00000504131 ZANQ9Y493 2812 aa3□□□□□ -1.93
CLCN3-204ENST00000504131 KRTAP13-4Q3LI77 160 aa2.98□□□□□ -1.93
CLCN3-204ENST00000504131 KRTAP13-2Q52LG2 175 aa2.98□□□□□ -1.93
CLCN3-204ENST00000504131 LYSTQ99698 3801 aa2.98□□□□□ -1.93
CLCN3-204ENST00000504131 KRTAP3-1Q9BYR8 98 aa2.97□□□□□ -1.93
CLCN3-204ENST00000504131 NIPBLQ6KC79 2804 aaeCLIP2.95□□□□□ -1.94
CLCN3-204ENST00000504131 FRAS1Q86XX4 4008 aa2.95□□□□□ -1.94
CLCN3-204ENST00000504131 DNAH9Q9NYC9 4486 aa2.94□□□□□ -1.94
CLCN3-204ENST00000504131 NF1P21359 2839 aa2.93□□□□□ -1.94
CLCN3-204ENST00000504131 A0A1B0GVY2 172 aa2.93□□□□□ -1.94
CLCN3-204ENST00000504131 CSMD3Q7Z407 3707 aa2.92□□□□□ -1.94
CLCN3-204ENST00000504131 HUWE1Q7Z6Z7 4374 aaKnown RBP2.92□□□□□ -1.94
CLCN3-204ENST00000504131 KRTAP17-1Q9BYP8 105 aa2.91□□□□□ -1.94
CLCN3-204ENST00000504131 VPS13DQ5THJ4 4388 aa2.9□□□□□ -1.94
CLCN3-204ENST00000504131 DNAH17Q9UFH2 4485 aa2.89□□□□□ -1.95
CLCN3-204ENST00000504131 FBN1P35555 2871 aaKnown RBP2.87□□□□□ -1.95
CLCN3-204ENST00000504131 VWFP04275 2813 aa2.87□□□□□ -1.95
CLCN3-204ENST00000504131 HECTD4Q9Y4D8 3996 aa2.87□□□□□ -1.95
CLCN3-204ENST00000504131 COL7A1Q02388 2944 aa2.87□□□□□ -1.95
CLCN3-204ENST00000504131 TENM1Q9UKZ4 2725 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms