RNA–Protein interactions for RNA: ENST00000502717.5

HMGXB3-201, Transcript of HMG-box containing 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGXB3, Length 4,974 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-201ENST00000502717 A0A087X002 238 aa10.14□□□□□ -0.79
HMGXB3-201ENST00000502717 NOTCH2NLQ7Z3S9 236 aa10.14□□□□□ -0.79
HMGXB3-201ENST00000502717 KRTAP11-1Q8IUC1 163 aa10.11□□□□□ -0.79
HMGXB3-201ENST00000502717 PANO1I0J062 215 aa10.1□□□□□ -0.79
HMGXB3-201ENST00000502717 ASH1LQ9NR48 2969 aaKnown RBP10.07□□□□□ -0.8
HMGXB3-201ENST00000502717 CELSR2Q9HCU4 2923 aa10.05□□□□□ -0.8
HMGXB3-201ENST00000502717 TENM4Q6N022 2769 aa10.03□□□□□ -0.8
HMGXB3-201ENST00000502717 NF1P21359 2839 aa10.03□□□□□ -0.8
HMGXB3-201ENST00000502717 ADM2Q7Z4H4 148 aa10.02□□□□□ -0.81
HMGXB3-201ENST00000502717 H1FX-AS1Q4G0G2 97 aa10.01□□□□□ -0.81
HMGXB3-201ENST00000502717 CRYBG3Q68DQ2 2970 aa10.01□□□□□ -0.81
HMGXB3-201ENST00000502717 KRTAP10-1P60331 282 aa10□□□□□ -0.81
HMGXB3-201ENST00000502717 KRTAP13-1Q8IUC0 172 aa9.99□□□□□ -0.81
HMGXB3-201ENST00000502717 ROMO1P60602 79 aa9.97□□□□□ -0.81
HMGXB3-201ENST00000502717 FBN2P35556 2912 aa9.97□□□□□ -0.81
HMGXB3-201ENST00000502717 RPL37P61927 97 aaKnown RBP9.95□□□□□ -0.82
HMGXB3-201ENST00000502717 DCHS2Q6V1P9 2916 aa9.95□□□□□ -0.82
HMGXB3-201ENST00000502717 KRTAP10-2P60368 255 aa9.95□□□□□ -0.82
HMGXB3-201ENST00000502717 MXRA5Q9NR99 2828 aa9.91□□□□□ -0.82
HMGXB3-201ENST00000502717 KRTAP25-1Q3LHN0 102 aa9.91□□□□□ -0.82
HMGXB3-201ENST00000502717 LUZP6Q538Z0 58 aa9.87□□□□□ -0.83
HMGXB3-201ENST00000502717 Q6ZRN7 208 aaPredicted RBP9.84□□□□□ -0.83
HMGXB3-201ENST00000502717 MUC3AQ02505 3323 aa9.84□□□□□ -0.83
HMGXB3-201ENST00000502717 RELNP78509 3460 aa9.83□□□□□ -0.84
HMGXB3-201ENST00000502717 S4R3F8 94 aa9.82□□□□□ -0.84
HMGXB3-201ENST00000502717 CAMK2N1Q7Z7J9 78 aa9.82□□□□□ -0.84
HMGXB3-201ENST00000502717 WDFY3Q8IZQ1 3526 aa9.76□□□□□ -0.85
HMGXB3-201ENST00000502717 LAMA5O15230 3695 aa9.72□□□□□ -0.85
HMGXB3-201ENST00000502717 DMDP11532 3685 aa9.7□□□□□ -0.86
HMGXB3-201ENST00000502717 KRTAP13-2Q52LG2 175 aa9.66□□□□□ -0.86
HMGXB3-201ENST00000502717 DCHS1Q96JQ0 3298 aa9.66□□□□□ -0.86
HMGXB3-201ENST00000502717 RPS29P62273 56 aaKnown RBP9.64□□□□□ -0.87
HMGXB3-201ENST00000502717 ASPMQ8IZT6 3477 aa9.62□□□□□ -0.87
HMGXB3-201ENST00000502717 A0A0A0MQY5 61 aa9.6□□□□□ -0.87
HMGXB3-201ENST00000502717 R4GN34 69 aa9.58□□□□□ -0.88
HMGXB3-201ENST00000502717 ZFHX4Q86UP3 3567 aa9.57□□□□□ -0.88
HMGXB3-201ENST00000502717 PDZD2O15018 2839 aa9.56□□□□□ -0.88
HMGXB3-201ENST00000502717 A8MUU9 505 aa9.54□□□□□ -0.88
HMGXB3-201ENST00000502717 KRTAP16-1A8MUX0 517 aa9.53□□□□□ -0.88
HMGXB3-201ENST00000502717 CELSR1Q9NYQ6 3014 aa9.49□□□□□ -0.89
HMGXB3-201ENST00000502717 TENM3Q9P273 2699 aa9.48□□□□□ -0.89
HMGXB3-201ENST00000502717 NDUFAF8A1L188 74 aa9.45□□□□□ -0.9
HMGXB3-201ENST00000502717 TENM1Q9UKZ4 2725 aa9.45□□□□□ -0.9
HMGXB3-201ENST00000502717 PLAC4Q8WY50 150 aa9.44□□□□□ -0.9
HMGXB3-201ENST00000502717 M0QZ58 72 aa9.42□□□□□ -0.9
HMGXB3-201ENST00000502717 H0YAA0 97 aa9.42□□□□□ -0.9
HMGXB3-201ENST00000502717 KRTAP13-3Q3SY46 172 aa9.4□□□□□ -0.9
HMGXB3-201ENST00000502717 CSMD1Q96PZ7 3565 aa9.38□□□□□ -0.91
HMGXB3-201ENST00000502717 C20orf166-AS1Q96NR2 134 aa9.37□□□□□ -0.91
HMGXB3-201ENST00000502717 SMG1Q96Q15 3661 aaKnown RBP9.35□□□□□ -0.91
HMGXB3-201ENST00000502717 OTOGQ6ZRI0 2925 aa9.34□□□□□ -0.91
HMGXB3-201ENST00000502717 VWFP04275 2813 aa9.29□□□□□ -0.92
HMGXB3-201ENST00000502717 KRTAP1-4P0C5Y4 121 aa9.26□□□□□ -0.93
HMGXB3-201ENST00000502717 TENM2Q9NT68 2774 aa9.19□□□□□ -0.94
HMGXB3-201ENST00000502717 FBN1P35555 2871 aaKnown RBP9.17□□□□□ -0.94
HMGXB3-201ENST00000502717 C10orf95Q9H7T3 257 aa9.14□□□□□ -0.95
HMGXB3-201ENST00000502717 NBPF19A0A087WUL8 3843 aa9.13□□□□□ -0.95
HMGXB3-201ENST00000502717 TGP01266 2768 aa9.12□□□□□ -0.95
HMGXB3-201ENST00000502717 SPENQ96T58 3664 aaKnown RBP9.07□□□□□ -0.96
HMGXB3-201ENST00000502717 SVEP1Q4LDE5 3571 aa9.07□□□□□ -0.96
HMGXB3-201ENST00000502717 BSNQ9UPA5 3926 aa9.05□□□□□ -0.96
HMGXB3-201ENST00000502717 PKD1L1Q8TDX9 2849 aa9.02□□□□□ -0.97
HMGXB3-201ENST00000502717 P0C880 135 aa8.99□□□□□ -0.97
HMGXB3-201ENST00000502717 ANK3Q12955 4377 aaKnown RBP8.98□□□□□ -0.97
HMGXB3-201ENST00000502717 ZFHX3Q15911 3703 aa8.93□□□□□ -0.98
HMGXB3-201ENST00000502717 CSMD2Q7Z408 3487 aa8.92□□□□□ -0.98
HMGXB3-201ENST00000502717 PP632Q6XCG6 107 aa8.89□□□□□ -0.99
HMGXB3-201ENST00000502717 TPRXLQ17RH7 258 aa8.88□□□□□ -0.99
HMGXB3-201ENST00000502717 XP32Q5T750 250 aa8.86□□□□□ -0.99
HMGXB3-201ENST00000502717 TNP1P09430 55 aa8.79□□□□□ -1
HMGXB3-201ENST00000502717 CUBNO60494 3623 aa8.75□□□□□ -1.01
HMGXB3-201ENST00000502717 KRTAP3-1Q9BYR8 98 aa8.75□□□□□ -1.01
HMGXB3-201ENST00000502717 A0A1B0GVY2 172 aa8.74□□□□□ -1.01
HMGXB3-201ENST00000502717 TRRAPQ9Y4A5 3859 aa8.74□□□□□ -1.01
HMGXB3-201ENST00000502717 KRTAP12-2P59991 146 aa8.67□□□□□ -1.02
HMGXB3-201ENST00000502717 KRTAP10-10P60014 251 aa8.66□□□□□ -1.02
HMGXB3-201ENST00000502717 SRRM2Q9UQ35 2752 aaKnown RBP8.65□□□□□ -1.02
HMGXB3-201ENST00000502717 KRTAP10-8P60410 259 aa8.65□□□□□ -1.02
HMGXB3-201ENST00000502717 FBN3Q75N90 2809 aa8.58□□□□□ -1.04
HMGXB3-201ENST00000502717 KRTAP12-1P59990 96 aa8.58□□□□□ -1.04
HMGXB3-201ENST00000502717 PRO2289Q9P1D8 64 aa8.55□□□□□ -1.04
HMGXB3-201ENST00000502717 MEGF8Q7Z7M0 2845 aa8.54□□□□□ -1.04
HMGXB3-201ENST00000502717 KRTAP10-6P60371 365 aaPredicted RBP8.53□□□□□ -1.04
HMGXB3-201ENST00000502717 KRTAP13-4Q3LI77 160 aa8.51□□□□□ -1.05
HMGXB3-201ENST00000502717 VPS13CQ709C8 3753 aa8.43□□□□□ -1.06
HMGXB3-201ENST00000502717 KRTAP15-1Q3LI76 137 aa8.4□□□□□ -1.07
HMGXB3-201ENST00000502717 ZNF469Q96JG9 3925 aaPredicted RBP8.34□□□□□ -1.07
HMGXB3-201ENST00000502717 HUWE1Q7Z6Z7 4374 aaKnown RBP8.31□□□□□ -1.08
HMGXB3-201ENST00000502717 KRTAP3-2Q9BYR7 98 aa8.28□□□□□ -1.08
HMGXB3-201ENST00000502717 COL7A1Q02388 2944 aa8.25□□□□□ -1.09
HMGXB3-201ENST00000502717 KRTAP3-3Q9BYR6 98 aa8.24□□□□□ -1.09
HMGXB3-201ENST00000502717 AKAP9Q99996 3911 aa8.2□□□□□ -1.1
HMGXB3-201ENST00000502717 KRTAP10-4P60372 401 aaPredicted RBP8.09□□□□□ -1.12
HMGXB3-201ENST00000502717 DNAH9Q9NYC9 4486 aa8.04□□□□□ -1.12
HMGXB3-201ENST00000502717 MT1HL1P0DM35 61 aa8.03□□□□□ -1.12
HMGXB3-201ENST00000502717 ALMS1Q8TCU4 4167 aa7.84□□□□□ -1.16
HMGXB3-201ENST00000502717 PLECQ15149 4684 aaKnown RBP7.83□□□□□ -1.16
HMGXB3-201ENST00000502717 CSMD3Q7Z407 3707 aa7.8□□□□□ -1.16
HMGXB3-201ENST00000502717 DNAH1Q9P2D7 4330 aa7.77□□□□□ -1.16
HMGXB3-201ENST00000502717 INE1O15225 51 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms