RNA–Protein interactions for RNA: ENST00000498463.5

SNX13-212, Transcript of sorting nexin 13, humanhuman

TSL 3

Gene SNX13, Length 687 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-212ENST00000498463 AKAP6Q13023 2319 aa3.25□□□□□ -1.89
SNX13-212ENST00000498463 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.25□□□□□ -1.89
SNX13-212ENST00000498463 UBE2DNLQ8IWF7 75 aa3.25□□□□□ -1.89
SNX13-212ENST00000498463 PCNX1Q96RV3 2341 aa3.24□□□□□ -1.89
SNX13-212ENST00000498463 SMG1Q96Q15 3661 aaKnown RBP3.24□□□□□ -1.89
SNX13-212ENST00000498463 KRTAP5-5Q701N2 237 aaPredicted RBP3.24□□□□□ -1.89
SNX13-212ENST00000498463 DEFB124Q8NES8 71 aa3.24□□□□□ -1.89
SNX13-212ENST00000498463 BOD1L1Q8NFC6 3051 aa3.23□□□□□ -1.89
SNX13-212ENST00000498463 SPTA1P02549 2419 aa3.22□□□□□ -1.89
SNX13-212ENST00000498463 ATMQ13315 3056 aa3.21□□□□□ -1.9
SNX13-212ENST00000498463 A0A096LNI7 61 aa3.21□□□□□ -1.9
SNX13-212ENST00000498463 CHD6Q8TD26 2715 aa3.21□□□□□ -1.9
SNX13-212ENST00000498463 RP1L1Q8IWN7 2480 aaPredicted RBP3.21□□□□□ -1.9
SNX13-212ENST00000498463 ROS1P08922 2347 aa3.21□□□□□ -1.9
SNX13-212ENST00000498463 FAM208BQ5VWN6 2430 aa3.21□□□□□ -1.9
SNX13-212ENST00000498463 DMXL2Q8TDJ6 3036 aa3.2□□□□□ -1.9
SNX13-212ENST00000498463 HTN3P15516 51 aa3.2□□□□□ -1.9
SNX13-212ENST00000498463 KRTAP5-1Q6L8H4 278 aa3.2□□□□□ -1.9
SNX13-212ENST00000498463 USP24Q9UPU5 2620 aa3.19□□□□□ -1.9
SNX13-212ENST00000498463 RELNP78509 3460 aa3.18□□□□□ -1.9
SNX13-212ENST00000498463 MAST4O15021 2626 aa3.18□□□□□ -1.9
SNX13-212ENST00000498463 CEP295Q9C0D2 2601 aa3.18□□□□□ -1.9
SNX13-212ENST00000498463 SPINK6Q6UWN8 80 aa3.18□□□□□ -1.9
SNX13-212ENST00000498463 ANKRD11Q6UB99 2663 aaPredicted RBP3.18□□□□□ -1.9
SNX13-212ENST00000498463 NBEAQ8NFP9 2946 aa3.17□□□□□ -1.9
SNX13-212ENST00000498463 DSPP15924 2871 aaKnown RBP3.17□□□□□ -1.9
SNX13-212ENST00000498463 IGF2RP11717 2491 aa3.16□□□□□ -1.9
SNX13-212ENST00000498463 FASNP49327 2511 aaKnown RBP3.16□□□□□ -1.9
SNX13-212ENST00000498463 C10orf95Q9H7T3 257 aa3.15□□□□□ -1.91
SNX13-212ENST00000498463 APLNQ9ULZ1 77 aa3.15□□□□□ -1.91
SNX13-212ENST00000498463 S4R3F8 94 aa3.15□□□□□ -1.91
SNX13-212ENST00000498463 PRRC2CQ9Y520 2896 aaKnown RBP3.15□□□□□ -1.91
SNX13-212ENST00000498463 C2CD3Q4AC94 2353 aa3.15□□□□□ -1.91
SNX13-212ENST00000498463 ZFYVE26Q68DK2 2539 aa3.15□□□□□ -1.91
SNX13-212ENST00000498463 ZNF462Q96JM2 2506 aa3.14□□□□□ -1.91
SNX13-212ENST00000498463 ITPR1Q14643 2758 aa3.13□□□□□ -1.91
SNX13-212ENST00000498463 DEFB135Q30KP9 77 aa3.13□□□□□ -1.91
SNX13-212ENST00000498463 VPS13CQ709C8 3753 aa3.13□□□□□ -1.91
SNX13-212ENST00000498463 TENM2Q9NT68 2774 aa3.12□□□□□ -1.91
SNX13-212ENST00000498463 KALRNO60229 2985 aa3.12□□□□□ -1.91
SNX13-212ENST00000498463 FLNBO75369 2602 aaKnown RBP3.12□□□□□ -1.91
SNX13-212ENST00000498463 USP9XQ93008 2570 aaPredicted RBP3.11□□□□□ -1.91
SNX13-212ENST00000498463 ADGRG4Q8IZF6 3080 aa3.11□□□□□ -1.91
SNX13-212ENST00000498463 NBPF19A0A087WUL8 3843 aa3.1□□□□□ -1.91
SNX13-212ENST00000498463 HRNRQ86YZ3 2850 aaPredicted RBP3.1□□□□□ -1.91
SNX13-212ENST00000498463 ASH1LQ9NR48 2969 aaKnown RBP3.09□□□□□ -1.91
SNX13-212ENST00000498463 PIEZO2Q9H5I5 2752 aa3.09□□□□□ -1.91
SNX13-212ENST00000498463 CREBBPQ92793 2442 aa3.09□□□□□ -1.91
SNX13-212ENST00000498463 DCHS2Q6V1P9 2916 aa3.09□□□□□ -1.91
SNX13-212ENST00000498463 TLN1Q9Y490 2541 aaKnown RBP3.09□□□□□ -1.91
SNX13-212ENST00000498463 HELZ2Q9BYK8 2649 aaKnown RBP3.09□□□□□ -1.91
SNX13-212ENST00000498463 FLG2Q5D862 2391 aaPredicted RBP3.09□□□□□ -1.92
SNX13-212ENST00000498463 ANK3Q12955 4377 aaKnown RBP3.08□□□□□ -1.92
SNX13-212ENST00000498463 MAP1AP78559 2803 aaPredicted RBP3.08□□□□□ -1.92
SNX13-212ENST00000498463 SVEP1Q4LDE5 3571 aa3.08□□□□□ -1.92
SNX13-212ENST00000498463 ANKHD1Q8IWZ3 2542 aaKnown RBP3.07□□□□□ -1.92
SNX13-212ENST00000498463 M0QZ58 72 aa3.07□□□□□ -1.92
SNX13-212ENST00000498463 DEFB4AO15263 64 aa3.07□□□□□ -1.92
SNX13-212ENST00000498463 IGSF10Q6WRI0 2623 aa3.07□□□□□ -1.92
SNX13-212ENST00000498463 GCN1Q92616 2671 aaKnown RBP3.06□□□□□ -1.92
SNX13-212ENST00000498463 CFAP46Q8IYW2 2715 aa3.06□□□□□ -1.92
SNX13-212ENST00000498463 AKAP9Q99996 3911 aa3.06□□□□□ -1.92
SNX13-212ENST00000498463 NAV2Q8IVL1 2488 aa3.05□□□□□ -1.92
SNX13-212ENST00000498463 TEP1Q99973 2627 aaKnown RBP3.05□□□□□ -1.92
SNX13-212ENST00000498463 SPG11Q96JI7 2443 aa3.04□□□□□ -1.92
SNX13-212ENST00000498463 CSPG4Q6UVK1 2322 aa3.04□□□□□ -1.92
SNX13-212ENST00000498463 CSMD1Q96PZ7 3565 aa3.04□□□□□ -1.92
SNX13-212ENST00000498463 A0A0D9SG42 100 aa3.04□□□□□ -1.92
SNX13-212ENST00000498463 CSMD2Q7Z408 3487 aa3.03□□□□□ -1.92
SNX13-212ENST00000498463 ZNF469Q96JG9 3925 aaPredicted RBP3.03□□□□□ -1.92
SNX13-212ENST00000498463 KRTAP12-4P60329 112 aa3.03□□□□□ -1.92
SNX13-212ENST00000498463 FBN1P35555 2871 aaKnown RBP3.03□□□□□ -1.92
SNX13-212ENST00000498463 LRBAP50851 2863 aa3.03□□□□□ -1.92
SNX13-212ENST00000498463 HIVEP3Q5T1R4 2406 aa3.02□□□□□ -1.93
SNX13-212ENST00000498463 FBN3Q75N90 2809 aa3.01□□□□□ -1.93
SNX13-212ENST00000498463 NOTCH2Q04721 2471 aa3.01□□□□□ -1.93
SNX13-212ENST00000498463 NBASA2RRP1 2371 aa3.01□□□□□ -1.93
SNX13-212ENST00000498463 FBN2P35556 2912 aa3□□□□□ -1.93
SNX13-212ENST00000498463 MYO18BQ8IUG5 2567 aa3□□□□□ -1.93
SNX13-212ENST00000498463 RPS29P62273 56 aaKnown RBP3□□□□□ -1.93
SNX13-212ENST00000498463 HECTD1Q9ULT8 2610 aa3□□□□□ -1.93
SNX13-212ENST00000498463 COL12A1Q99715 3063 aa2.99□□□□□ -1.93
SNX13-212ENST00000498463 ABCA2Q9BZC7 2435 aa2.99□□□□□ -1.93
SNX13-212ENST00000498463 CRYBG3Q68DQ2 2970 aa2.98□□□□□ -1.93
SNX13-212ENST00000498463 PTPN13Q12923 2485 aa2.98□□□□□ -1.93
SNX13-212ENST00000498463 SPTAN1Q13813 2472 aaKnown RBP2.98□□□□□ -1.93
SNX13-212ENST00000498463 UTP20O75691 2785 aaKnown RBP2.98□□□□□ -1.93
SNX13-212ENST00000498463 TENM4Q6N022 2769 aa2.98□□□□□ -1.93
SNX13-212ENST00000498463 FLNCQ14315 2725 aa2.98□□□□□ -1.93
SNX13-212ENST00000498463 UBR5O95071 2799 aaPredicted RBP2.98□□□□□ -1.93
SNX13-212ENST00000498463 CELSR2Q9HCU4 2923 aa2.97□□□□□ -1.93
SNX13-212ENST00000498463 TACC2O95359 2948 aa2.97□□□□□ -1.93
SNX13-212ENST00000498463 OTOGQ6ZRI0 2925 aa2.97□□□□□ -1.93
SNX13-212ENST00000498463 CUBNO60494 3623 aa2.97□□□□□ -1.93
SNX13-212ENST00000498463 LRRK2Q5S007 2527 aa2.96□□□□□ -1.93
SNX13-212ENST00000498463 MYO9AB2RTY4 2548 aa2.96□□□□□ -1.94
SNX13-212ENST00000498463 CELSR1Q9NYQ6 3014 aa2.96□□□□□ -1.94
SNX13-212ENST00000498463 DOPEY1Q5JWR5 2465 aa2.96□□□□□ -1.94
SNX13-212ENST00000498463 KRTAP21-3Q3LHN1 58 aa2.94□□□□□ -1.94
SNX13-212ENST00000498463 LCE1CQ5T751 118 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms