RNA–Protein interactions for RNA: ENST00000498463.5

SNX13-212, Transcript of sorting nexin 13, humanhuman

TSL 3

Gene SNX13, Length 687 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-212ENST00000498463 CHIC1Q5VXU3 224 aa28.81■■■□□ 2.2
SNX13-212ENST00000498463 AEBP2Q6ZN18 517 aaPredicted RBP28.26■■■□□ 2.11
SNX13-212ENST00000498463 PHF23Q9BUL5 403 aaPredicted RBP25.51■■□□□ 1.67
SNX13-212ENST00000498463 PLPPR3Q6T4P5 718 aa23.94■■□□□ 1.42
SNX13-212ENST00000498463 SENP3Q9H4L4 574 aaPredicted RBP23.72■■□□□ 1.39
SNX13-212ENST00000498463 ADRA2BP18089 450 aa22.44■■□□□ 1.18
SNX13-212ENST00000498463 EHMT2Q96KQ7 1210 aa22.33■■□□□ 1.17
SNX13-212ENST00000498463 KCNA4P22459 653 aa22.29■■□□□ 1.16
SNX13-212ENST00000498463 PPP6R1Q9UPN7 881 aa22.08■■□□□ 1.13
SNX13-212ENST00000498463 FOXD1Q16676 465 aa21.89■■□□□ 1.09
SNX13-212ENST00000498463 CSRNP3Q8WYN3 585 aa21.45■■□□□ 1.02
SNX13-212ENST00000498463 SLC4A1APQ9BWU0 796 aaKnown RBP21.43■■□□□ 1.02
SNX13-212ENST00000498463 PPP4R3CPQ6ZMV5 832 aa21.27■■□□□ 1
SNX13-212ENST00000498463 NCBP3Q53F19 620 aaKnown RBP21.05■□□□□ 0.96
SNX13-212ENST00000498463 PIAS4Q8N2W9 510 aaPredicted RBP20.96■□□□□ 0.95
SNX13-212ENST00000498463 NPM3O75607 178 aaKnown RBP20.81■□□□□ 0.92
SNX13-212ENST00000498463 ZBTB22O15209 634 aa20.57■□□□□ 0.88
SNX13-212ENST00000498463 CNKSR2Q8WXI2 1034 aa20.37■□□□□ 0.85
SNX13-212ENST00000498463 SCAF1Q9H7N4 1312 aaKnown RBP20.16■□□□□ 0.82
SNX13-212ENST00000498463 FOXD4L1Q9NU39 408 aa20.11■□□□□ 0.81
SNX13-212ENST00000498463 SLC24A1O60721 1099 aa20.05■□□□□ 0.8
SNX13-212ENST00000498463 DNAJC5BQ9UF47 199 aa19.98■□□□□ 0.79
SNX13-212ENST00000498463 RTN4Q9NQC3 1192 aaKnown RBP19.9■□□□□ 0.78
SNX13-212ENST00000498463 AMER1Q5JTC6 1135 aaPredicted RBP19.84■□□□□ 0.77
SNX13-212ENST00000498463 MAPK8IP2Q13387 824 aaPredicted RBP19.7■□□□□ 0.74
SNX13-212ENST00000498463 RNF216Q9NWF9 866 aaPredicted RBP19.67■□□□□ 0.74
SNX13-212ENST00000498463 MSH5O43196 834 aa19.64■□□□□ 0.73
SNX13-212ENST00000498463 SLC4A2P04920 1241 aa19.35■□□□□ 0.69
SNX13-212ENST00000498463 FKBP8Q14318 412 aa19.31■□□□□ 0.68
SNX13-212ENST00000498463 ATXN8OSP0DMR3 200 aa19.26■□□□□ 0.67
SNX13-212ENST00000498463 HOXD11P31277 338 aaPredicted RBP19.26■□□□□ 0.67
SNX13-212ENST00000498463 MYCNP04198 464 aaPredicted RBP19.18■□□□□ 0.66
SNX13-212ENST00000498463 DMRT2Q9Y5R5 561 aa19.16■□□□□ 0.66
SNX13-212ENST00000498463 ATF5Q9Y2D1 282 aaPredicted RBP18.62■□□□□ 0.57
SNX13-212ENST00000498463 SAMD1Q6SPF0 538 aaPredicted RBP18.39■□□□□ 0.53
SNX13-212ENST00000498463 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.37■□□□□ 0.53
SNX13-212ENST00000498463 HNRNPUL2Q1KMD3 747 aaKnown RBP18.37■□□□□ 0.53
SNX13-212ENST00000498463 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.35■□□□□ 0.53
SNX13-212ENST00000498463 PLCB2Q00722 1185 aa18.28■□□□□ 0.52
SNX13-212ENST00000498463 DCAF8L1A6NGE4 600 aa18.25■□□□□ 0.51
SNX13-212ENST00000498463 U3KPZ7 1027 aaPredicted RBP18.23■□□□□ 0.51
SNX13-212ENST00000498463 FBXO3Q9UK99 471 aa18.22■□□□□ 0.51
SNX13-212ENST00000498463 ZNF219Q9P2Y4 722 aaPredicted RBP18.12■□□□□ 0.49
SNX13-212ENST00000498463 SPDYE4A6NLX3 237 aa18.05■□□□□ 0.48
SNX13-212ENST00000498463 HAP1P54257 671 aaPredicted RBP18.01■□□□□ 0.47
SNX13-212ENST00000498463 VASPP50552 380 aaPredicted RBP18■□□□□ 0.47
SNX13-212ENST00000498463 PROM2Q8N271 834 aa17.97■□□□□ 0.47
SNX13-212ENST00000498463 DCAF8L2P0C7V8 631 aa17.91■□□□□ 0.46
SNX13-212ENST00000498463 MKRN4PQ13434 485 aaPredicted RBP17.87■□□□□ 0.45
SNX13-212ENST00000498463 BCANQ96GW7 911 aa17.87■□□□□ 0.45
SNX13-212ENST00000498463 APLP2Q06481 763 aa17.86■□□□□ 0.45
SNX13-212ENST00000498463 IFNLR1Q8IU57 520 aaPredicted RBP17.85■□□□□ 0.45
SNX13-212ENST00000498463 PKD2Q13563 968 aa17.76■□□□□ 0.43
SNX13-212ENST00000498463 PRKCSHP14314 528 aaPredicted RBP17.75■□□□□ 0.43
SNX13-212ENST00000498463 VSIG10Q8N0Z9 540 aa17.74■□□□□ 0.43
SNX13-212ENST00000498463 TAOK2Q9UL54 1235 aa17.7■□□□□ 0.42
SNX13-212ENST00000498463 FBLN2P98095 1184 aa17.68■□□□□ 0.42
SNX13-212ENST00000498463 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.49■□□□□ 0.39
SNX13-212ENST00000498463 BBXQ8WY36 941 aaPredicted RBP17.48■□□□□ 0.39
SNX13-212ENST00000498463 KDM2AQ9Y2K7 1162 aa17.48■□□□□ 0.39
SNX13-212ENST00000498463 TRHP20396 242 aaPredicted RBP17.42■□□□□ 0.38
SNX13-212ENST00000498463 POLA2Q14181 598 aa17.42■□□□□ 0.38
SNX13-212ENST00000498463 TPRNQ4KMQ1 711 aa17.42■□□□□ 0.38
SNX13-212ENST00000498463 ECM2O94769 699 aaPredicted RBP17.39■□□□□ 0.37
SNX13-212ENST00000498463 NPM1P06748 294 aaKnown RBP eCLIP17.39■□□□□ 0.37
SNX13-212ENST00000498463 PAXIP1Q6ZW49 1069 aaPredicted RBP17.39■□□□□ 0.37
SNX13-212ENST00000498463 SPOCK2Q92563 424 aa17.39■□□□□ 0.37
SNX13-212ENST00000498463 KLHL34Q8N239 644 aa17.35■□□□□ 0.37
SNX13-212ENST00000498463 SPINK5Q9NQ38 1064 aaPredicted RBP17.35■□□□□ 0.37
SNX13-212ENST00000498463 CFAP44Q96MT7 982 aa17.33■□□□□ 0.36
SNX13-212ENST00000498463 RGL2O15211 777 aa17.21■□□□□ 0.35
SNX13-212ENST00000498463 ZBTB12Q9Y330 459 aaPredicted RBP17.21■□□□□ 0.35
SNX13-212ENST00000498463 CAPN15O75808 1086 aa17.18■□□□□ 0.34
SNX13-212ENST00000498463 SPRYD3Q8NCJ5 442 aa17.17■□□□□ 0.34
SNX13-212ENST00000498463 TSHZ2Q9NRE2 1034 aa17.16■□□□□ 0.34
SNX13-212ENST00000498463 STAG3Q9UJ98 1225 aa17.13■□□□□ 0.33
SNX13-212ENST00000498463 PLCD3Q8N3E9 789 aa17.09■□□□□ 0.33
SNX13-212ENST00000498463 ABCB7O75027 752 aa17.01■□□□□ 0.31
SNX13-212ENST00000498463 CHGAP10645 457 aaKnown RBP17■□□□□ 0.31
SNX13-212ENST00000498463 ZNF692Q9BU19 519 aaPredicted RBP16.99■□□□□ 0.31
SNX13-212ENST00000498463 RNF39Q9H2S5 420 aa16.99■□□□□ 0.31
SNX13-212ENST00000498463 MIER1Q8N108 512 aa16.95■□□□□ 0.3
SNX13-212ENST00000498463 DNAJC5Q9H3Z4 198 aa16.95■□□□□ 0.3
SNX13-212ENST00000498463 NBR1Q14596 966 aa16.92■□□□□ 0.3
SNX13-212ENST00000498463 CIZ1Q9ULV3 898 aaPredicted RBP16.91■□□□□ 0.3
SNX13-212ENST00000498463 SSUH2Q9Y2M2 353 aa16.91■□□□□ 0.3
SNX13-212ENST00000498463 SPDYE2BA6NHP3 402 aa16.86■□□□□ 0.29
SNX13-212ENST00000498463 SPDYE6P0CI01 402 aa16.86■□□□□ 0.29
SNX13-212ENST00000498463 SPDYE2Q495Y8 402 aa16.86■□□□□ 0.29
SNX13-212ENST00000498463 PABPN1Q86U42 306 aaKnown RBP eCLIP16.83■□□□□ 0.28
SNX13-212ENST00000498463 OSCARQ8IYS5 282 aa16.83■□□□□ 0.28
SNX13-212ENST00000498463 C1QBPQ07021 282 aaKnown RBP16.82■□□□□ 0.28
SNX13-212ENST00000498463 HS6ST3Q8IZP7 471 aa16.82■□□□□ 0.28
SNX13-212ENST00000498463 ZBTB47Q9UFB7 747 aaPredicted RBP16.79■□□□□ 0.28
SNX13-212ENST00000498463 TRIM41Q8WV44 630 aa16.78■□□□□ 0.28
SNX13-212ENST00000498463 PLEKHG5O94827 1062 aa16.74■□□□□ 0.27
SNX13-212ENST00000498463 TIMELESSQ9UNS1 1208 aa16.69■□□□□ 0.26
SNX13-212ENST00000498463 RNF25Q96BH1 459 aaPredicted RBP16.66■□□□□ 0.26
SNX13-212ENST00000498463 TULP1O00294 542 aaPredicted RBP16.62■□□□□ 0.25
SNX13-212ENST00000498463 DSG3P32926 999 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms