RNA–Protein interactions for RNA: ENST00000494815.1

TSPAN4-212, Transcript of tetraspanin 4, humanhuman

TSL 2

Gene TSPAN4, Length 2,187 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-212ENST00000494815 Q5VV11 94 aa11.13□□□□□ -0.63
TSPAN4-212ENST00000494815 A0A1B0GVY2 172 aa11.13□□□□□ -0.63
TSPAN4-212ENST00000494815 RPL37AP61513 92 aaKnown RBP11.13□□□□□ -0.63
TSPAN4-212ENST00000494815 LRP1BQ9NZR2 4599 aa11.12□□□□□ -0.63
TSPAN4-212ENST00000494815 PKHD1P08F94 4074 aa11.11□□□□□ -0.63
TSPAN4-212ENST00000494815 LINC00208Q96KT6 92 aa11.11□□□□□ -0.63
TSPAN4-212ENST00000494815 KMT2CQ8NEZ4 4911 aaKnown RBP11.1□□□□□ -0.63
TSPAN4-212ENST00000494815 IGLV9-49A0A0B4J1Y8 123 aa11.09□□□□□ -0.63
TSPAN4-212ENST00000494815 H3BPC8 53 aa11.09□□□□□ -0.63
TSPAN4-212ENST00000494815 CASC2Q6XLA1 102 aa11.08□□□□□ -0.64
TSPAN4-212ENST00000494815 H0Y9P7 68 aa11.07□□□□□ -0.64
TSPAN4-212ENST00000494815 SPANXA2-OT1Q8N9U9 137 aa11.07□□□□□ -0.64
TSPAN4-212ENST00000494815 A8MWP4 228 aa11.04□□□□□ -0.64
TSPAN4-212ENST00000494815 ANAPC11Q9NYG5 84 aa11.04□□□□□ -0.64
TSPAN4-212ENST00000494815 LINC00472Q9H8W2 130 aa11.03□□□□□ -0.64
TSPAN4-212ENST00000494815 MOBPQ13875 183 aa11.03□□□□□ -0.64
TSPAN4-212ENST00000494815 C4orf48Q5BLP8 95 aa11.03□□□□□ -0.64
TSPAN4-212ENST00000494815 DYNC1H1Q14204 4646 aaKnown RBP11.03□□□□□ -0.64
TSPAN4-212ENST00000494815 NDUFS5O43920 106 aa11.01□□□□□ -0.65
TSPAN4-212ENST00000494815 A6NN06 94 aa10.99□□□□□ -0.65
TSPAN4-212ENST00000494815 CHKB-CPT1BH3BT56 60 aa10.99□□□□□ -0.65
TSPAN4-212ENST00000494815 VPS13BQ7Z7G8 4022 aa10.98□□□□□ -0.65
TSPAN4-212ENST00000494815 ATP11AUNQ6ZP68 121 aa10.98□□□□□ -0.65
TSPAN4-212ENST00000494815 SPTSSBQ8NFR3 76 aa10.97□□□□□ -0.65
TSPAN4-212ENST00000494815 RYR3Q15413 4870 aa10.96□□□□□ -0.65
TSPAN4-212ENST00000494815 LCA10Q71F78 164 aa10.95□□□□□ -0.66
TSPAN4-212ENST00000494815 Q8N9P0 234 aaPredicted RBP10.95□□□□□ -0.66
TSPAN4-212ENST00000494815 MMP24-AS1A0A0U1RRL7 71 aa10.94□□□□□ -0.66
TSPAN4-212ENST00000494815 LIMD2Q9BT23 127 aa10.94□□□□□ -0.66
TSPAN4-212ENST00000494815 SSBP3-AS1Q7Z2R9 100 aa10.93□□□□□ -0.66
TSPAN4-212ENST00000494815 PRR15LQ9BU68 103 aa10.91□□□□□ -0.66
TSPAN4-212ENST00000494815 APOBP04114 4563 aaKnown RBP10.9□□□□□ -0.66
TSPAN4-212ENST00000494815 KRTAP1-4P0C5Y4 121 aa10.89□□□□□ -0.67
TSPAN4-212ENST00000494815 Q75L30 129 aa10.89□□□□□ -0.67
TSPAN4-212ENST00000494815 A0A087X002 238 aa10.87□□□□□ -0.67
TSPAN4-212ENST00000494815 SPINK6Q6UWN8 80 aa10.87□□□□□ -0.67
TSPAN4-212ENST00000494815 C7orf65Q6ZTY9 151 aa10.87□□□□□ -0.67
TSPAN4-212ENST00000494815 IGLV7-46A0A075B6I9 117 aa10.86□□□□□ -0.67
TSPAN4-212ENST00000494815 C8orf87E5RJ46 101 aa10.85□□□□□ -0.67
TSPAN4-212ENST00000494815 KRTAP13-2Q52LG2 175 aa10.84□□□□□ -0.67
TSPAN4-212ENST00000494815 COA5Q86WW8 74 aa10.84□□□□□ -0.67
TSPAN4-212ENST00000494815 SMR3BP02814 79 aaPredicted RBP10.84□□□□□ -0.67
TSPAN4-212ENST00000494815 ASB16-AS1Q495Z4 193 aa10.83□□□□□ -0.68
TSPAN4-212ENST00000494815 Q96NJ1 140 aa10.83□□□□□ -0.68
TSPAN4-212ENST00000494815 TP53AIP1Q9HCN2 124 aa10.83□□□□□ -0.68
TSPAN4-212ENST00000494815 LOC101927531A0A1B0GV80 90 aa10.82□□□□□ -0.68
TSPAN4-212ENST00000494815 A6NED7 52 aa10.82□□□□□ -0.68
TSPAN4-212ENST00000494815 CDC42SE1Q9NRR8 79 aa10.81□□□□□ -0.68
TSPAN4-212ENST00000494815 PLA2G1BP04054 148 aaKnown RBP10.8□□□□□ -0.68
TSPAN4-212ENST00000494815 KRTAP10-4P60372 401 aaPredicted RBP10.77□□□□□ -0.68
TSPAN4-212ENST00000494815 FAT1Q14517 4588 aa10.77□□□□□ -0.68
TSPAN4-212ENST00000494815 PCOTHQ58A44 107 aa10.77□□□□□ -0.69
TSPAN4-212ENST00000494815 C8orf17Q9NRJ1 99 aa10.77□□□□□ -0.69
TSPAN4-212ENST00000494815 TYMSOSQ8TAI1 123 aa10.72□□□□□ -0.69
TSPAN4-212ENST00000494815 A0A1B0GVX0 72 aa10.7□□□□□ -0.7
TSPAN4-212ENST00000494815 CDK2AP2O75956 126 aa10.7□□□□□ -0.7
TSPAN4-212ENST00000494815 IGHV6-1A0A0B4J1U7 121 aa10.68□□□□□ -0.7
TSPAN4-212ENST00000494815 H3BS24 57 aa10.68□□□□□ -0.7
TSPAN4-212ENST00000494815 LINC01558Q9Y6Z2 57 aa10.67□□□□□ -0.7
TSPAN4-212ENST00000494815 MRPL34Q9BQ48 92 aaKnown RBP10.66□□□□□ -0.7
TSPAN4-212ENST00000494815 FAM229AH3BQW9 127 aa10.65□□□□□ -0.7
TSPAN4-212ENST00000494815 PRR26Q8N8Z3 221 aa10.65□□□□□ -0.7
TSPAN4-212ENST00000494815 SPINK1P00995 79 aa10.64□□□□□ -0.71
TSPAN4-212ENST00000494815 SPAG11AQ6PDA7 123 aa10.63□□□□□ -0.71
TSPAN4-212ENST00000494815 HRES1P13985 223 aa10.62□□□□□ -0.71
TSPAN4-212ENST00000494815 HSPG2P98160 4391 aa10.6□□□□□ -0.71
TSPAN4-212ENST00000494815 RPS29P62273 56 aaKnown RBP10.59□□□□□ -0.71
TSPAN4-212ENST00000494815 LINC00304Q8N9R0 145 aa10.59□□□□□ -0.71
TSPAN4-212ENST00000494815 NOTCH2NLQ7Z3S9 236 aa10.58□□□□□ -0.72
TSPAN4-212ENST00000494815 EPPK1P58107 5090 aaKnown RBP10.57□□□□□ -0.72
TSPAN4-212ENST00000494815 LINC00313P59037 77 aa10.57□□□□□ -0.72
TSPAN4-212ENST00000494815 SPINK7P58062 85 aa10.56□□□□□ -0.72
TSPAN4-212ENST00000494815 Q5VSD8 79 aa10.55□□□□□ -0.72
TSPAN4-212ENST00000494815 RYR1P21817 5038 aa10.55□□□□□ -0.72
TSPAN4-212ENST00000494815 PKHD1L1Q86WI1 4243 aa10.54□□□□□ -0.72
TSPAN4-212ENST00000494815 PRAC1Q96KF2 57 aa10.53□□□□□ -0.72
TSPAN4-212ENST00000494815 KRTAP13-3Q3SY46 172 aa10.49□□□□□ -0.73
TSPAN4-212ENST00000494815 LINC01554Q52M75 96 aa10.49□□□□□ -0.73
TSPAN4-212ENST00000494815 Q5W150 140 aa10.48□□□□□ -0.73
TSPAN4-212ENST00000494815 BIRC6Q9NR09 4857 aa10.44□□□□□ -0.74
TSPAN4-212ENST00000494815 ADM2Q7Z4H4 148 aa10.43□□□□□ -0.74
TSPAN4-212ENST00000494815 KIAA1109Q2LD37 5005 aa10.42□□□□□ -0.74
TSPAN4-212ENST00000494815 ACYP2P14621 99 aa10.41□□□□□ -0.74
TSPAN4-212ENST00000494815 Q8N1X5 172 aa10.39□□□□□ -0.75
TSPAN4-212ENST00000494815 KRTAP17-1Q9BYP8 105 aa10.37□□□□□ -0.75
TSPAN4-212ENST00000494815 KRTAP10-8P60410 259 aa10.36□□□□□ -0.75
TSPAN4-212ENST00000494815 DMAC1Q96GE9 116 aa10.35□□□□□ -0.75
TSPAN4-212ENST00000494815 KRTAP16-1A8MUX0 517 aa10.33□□□□□ -0.76
TSPAN4-212ENST00000494815 LRP1Q07954 4544 aaKnown RBP10.33□□□□□ -0.76
TSPAN4-212ENST00000494815 TNXBP22105 4242 aa10.32□□□□□ -0.76
TSPAN4-212ENST00000494815 FLG2Q5D862 2391 aaPredicted RBP10.29□□□□□ -0.76
TSPAN4-212ENST00000494815 FAT3Q8TDW7 4589 aa10.27□□□□□ -0.77
TSPAN4-212ENST00000494815 IGKV2-30P06310 120 aa10.24□□□□□ -0.77
TSPAN4-212ENST00000494815 RETNLBQ9BQ08 111 aa10.22□□□□□ -0.77
TSPAN4-212ENST00000494815 A0A1B0GU69 56 aa10.21□□□□□ -0.78
TSPAN4-212ENST00000494815 MT1HL1P0DM35 61 aa10.17□□□□□ -0.78
TSPAN4-212ENST00000494815 MYCBP2O75592 4640 aa10.16□□□□□ -0.78
TSPAN4-212ENST00000494815 HERC2O95714 4834 aa10.15□□□□□ -0.78
TSPAN4-212ENST00000494815 SPATA8Q6RVD6 105 aa10.15□□□□□ -0.79
TSPAN4-212ENST00000494815 DMBT1Q9UGM3 2413 aaPredicted RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms