RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 FSIP2Q5CZC0 6907 aa12.71□□□□□ -0.37
HMGN1-217ENST00000489072 TRBV20-1A0A075B6N2 111 aa12.7□□□□□ -0.38
HMGN1-217ENST00000489072 C21orf62-AS1Q17RA5 79 aa12.7□□□□□ -0.38
HMGN1-217ENST00000489072 C8orf87E5RJ46 101 aa12.69□□□□□ -0.38
HMGN1-217ENST00000489072 JMJD7-PLA2G4BH0Y9G9 81 aa12.68□□□□□ -0.38
HMGN1-217ENST00000489072 LOC110117498A0A087WWA1 95 aa12.67□□□□□ -0.38
HMGN1-217ENST00000489072 CRCT1Q9UGL9 99 aa12.67□□□□□ -0.38
HMGN1-217ENST00000489072 J3KT08 172 aa12.66□□□□□ -0.38
HMGN1-217ENST00000489072 TSTD3H0UI37 97 aa12.65□□□□□ -0.38
HMGN1-217ENST00000489072 BATFQ16520 125 aa12.64□□□□□ -0.39
HMGN1-217ENST00000489072 LYRM7Q5U5X0 104 aa12.62□□□□□ -0.39
HMGN1-217ENST00000489072 C14orf132Q9NPU4 83 aa12.62□□□□□ -0.39
HMGN1-217ENST00000489072 HRES1P13985 223 aa12.6□□□□□ -0.39
HMGN1-217ENST00000489072 A0A1B0GW54 56 aa12.59□□□□□ -0.39
HMGN1-217ENST00000489072 MPLKIPQ8TAP9 179 aa12.59□□□□□ -0.39
HMGN1-217ENST00000489072 LOC105371267A0A1B0GV96 52 aa12.58□□□□□ -0.4
HMGN1-217ENST00000489072 PDE6GP18545 87 aa12.58□□□□□ -0.4
HMGN1-217ENST00000489072 NDUFB1O75438 58 aa12.55□□□□□ -0.4
HMGN1-217ENST00000489072 A8MWP4 228 aa12.53□□□□□ -0.4
HMGN1-217ENST00000489072 ZCCHC13Q8WW36 166 aaKnown RBP12.53□□□□□ -0.4
HMGN1-217ENST00000489072 FAM236DA0A1B0GTK5 79 aa12.52□□□□□ -0.41
HMGN1-217ENST00000489072 FAM236CP0DP71 79 aa12.52□□□□□ -0.41
HMGN1-217ENST00000489072 IGKV3D-7A0A0C4DH55 119 aa12.51□□□□□ -0.41
HMGN1-217ENST00000489072 C9orf118A6NHY6 69 aa12.51□□□□□ -0.41
HMGN1-217ENST00000489072 C8orf17Q9NRJ1 99 aa12.51□□□□□ -0.41
HMGN1-217ENST00000489072 TAX1BP3O14907 124 aa12.5□□□□□ -0.41
HMGN1-217ENST00000489072 Q8N9P0 234 aaPredicted RBP12.5□□□□□ -0.41
HMGN1-217ENST00000489072 KRTAP9-8Q9BYQ0 159 aa12.5□□□□□ -0.41
HMGN1-217ENST00000489072 RBM12B-AS1Q9P1G2 102 aa12.5□□□□□ -0.41
HMGN1-217ENST00000489072 A0A1W2PPM0 123 aa12.46□□□□□ -0.41
HMGN1-217ENST00000489072 MTURNQ8N3F0 131 aa12.45□□□□□ -0.42
HMGN1-217ENST00000489072 H3BT86 120 aa12.44□□□□□ -0.42
HMGN1-217ENST00000489072 NREPQ16612 68 aa12.44□□□□□ -0.42
HMGN1-217ENST00000489072 PRR15Q8IV56 129 aa12.42□□□□□ -0.42
HMGN1-217ENST00000489072 SPINK7P58062 85 aa12.41□□□□□ -0.42
HMGN1-217ENST00000489072 Q6ZVQ6 151 aa12.4□□□□□ -0.42
HMGN1-217ENST00000489072 MMP24-AS1A0A0U1RRL7 71 aa12.35□□□□□ -0.43
HMGN1-217ENST00000489072 MT2AP02795 61 aa12.32□□□□□ -0.44
HMGN1-217ENST00000489072 K7EQZ3 153 aa12.3□□□□□ -0.44
HMGN1-217ENST00000489072 TMEM254Q8TBM7 123 aa12.3□□□□□ -0.44
HMGN1-217ENST00000489072 MRPL34Q9BQ48 92 aaKnown RBP12.28□□□□□ -0.44
HMGN1-217ENST00000489072 SPCS1Q9Y6A9 102 aa12.28□□□□□ -0.44
HMGN1-217ENST00000489072 SMCPP49901 116 aaPredicted RBP12.24□□□□□ -0.45
HMGN1-217ENST00000489072 WFDC13Q8IUB5 93 aa12.24□□□□□ -0.45
HMGN1-217ENST00000489072 USH2AO75445 5202 aa12.23□□□□□ -0.45
HMGN1-217ENST00000489072 hDV103S1A0JD37 113 aa12.23□□□□□ -0.45
HMGN1-217ENST00000489072 MT1FP04733 61 aa12.23□□□□□ -0.45
HMGN1-217ENST00000489072 BPY2O14599 106 aa12.22□□□□□ -0.45
HMGN1-217ENST00000489072 NDUFS5O43920 106 aa12.16□□□□□ -0.46
HMGN1-217ENST00000489072 COL5A1-AS1Q5SY13 56 aa12.15□□□□□ -0.46
HMGN1-217ENST00000489072 Q8N9L7 120 aa12.14□□□□□ -0.47
HMGN1-217ENST00000489072 PRO0461Q9UI25 63 aa12.14□□□□□ -0.47
HMGN1-217ENST00000489072 SSPOA2VEC9 5147 aa12.13□□□□□ -0.47
HMGN1-217ENST00000489072 KRTAP10-10P60014 251 aa12.13□□□□□ -0.47
HMGN1-217ENST00000489072 KRTAP9-3Q9BYQ3 159 aa12.1□□□□□ -0.47
HMGN1-217ENST00000489072 K7EP34 96 aa12.08□□□□□ -0.48
HMGN1-217ENST00000489072 Q5W150 140 aa12.08□□□□□ -0.48
HMGN1-217ENST00000489072 LCE2BO14633 110 aa12.07□□□□□ -0.48
HMGN1-217ENST00000489072 CASC2Q6XLA1 102 aa12.05□□□□□ -0.48
HMGN1-217ENST00000489072 LINC00846Q9NV44 126 aa12.04□□□□□ -0.48
HMGN1-217ENST00000489072 IGKV2D-30A0A075B6S6 120 aa12.02□□□□□ -0.49
HMGN1-217ENST00000489072 IGKV2-30P06310 120 aa12.02□□□□□ -0.49
HMGN1-217ENST00000489072 HCG22E2RYF7 251 aa12□□□□□ -0.49
HMGN1-217ENST00000489072 UBL5Q9BZL1 73 aa11.98□□□□□ -0.49
HMGN1-217ENST00000489072 H1FX-AS1Q4G0G2 97 aa11.97□□□□□ -0.49
HMGN1-217ENST00000489072 C7orf65Q6ZTY9 151 aa11.97□□□□□ -0.49
HMGN1-217ENST00000489072 CXCL6P80162 114 aa11.9□□□□□ -0.5
HMGN1-217ENST00000489072 GTF2H5Q6ZYL4 71 aa11.88□□□□□ -0.51
HMGN1-217ENST00000489072 PCP4L1A6NKN8 68 aa11.85□□□□□ -0.51
HMGN1-217ENST00000489072 FCGBPQ9Y6R7 5405 aaPredicted RBP11.85□□□□□ -0.51
HMGN1-217ENST00000489072 KRTAP19-1Q8IUB9 90 aa11.84□□□□□ -0.51
HMGN1-217ENST00000489072 F8W1H4 67 aa11.82□□□□□ -0.52
HMGN1-217ENST00000489072 C4orf26Q17RF5 130 aa11.82□□□□□ -0.52
HMGN1-217ENST00000489072 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.81□□□□□ -0.52
HMGN1-217ENST00000489072 ETDBQ3ZM63 59 aa11.81□□□□□ -0.52
HMGN1-217ENST00000489072 KRTAP3-1Q9BYR8 98 aa11.68□□□□□ -0.54
HMGN1-217ENST00000489072 TP53AIP1Q9HCN2 124 aa11.66□□□□□ -0.54
HMGN1-217ENST00000489072 KRTAP9-7A8MTY7 169 aa11.64□□□□□ -0.55
HMGN1-217ENST00000489072 KRTAP19-6Q3LI70 58 aa11.61□□□□□ -0.55
HMGN1-217ENST00000489072 C5orf47Q569G3 176 aa11.58□□□□□ -0.56
HMGN1-217ENST00000489072 C1orf64Q8NEQ6 169 aa11.58□□□□□ -0.56
HMGN1-217ENST00000489072 S4R3F8 94 aa11.54□□□□□ -0.56
HMGN1-217ENST00000489072 ACYP1P07311 99 aa11.5□□□□□ -0.57
HMGN1-217ENST00000489072 LCA10Q71F78 164 aa11.49□□□□□ -0.57
HMGN1-217ENST00000489072 FAM240AA0A1B0GVK7 77 aa11.46□□□□□ -0.57
HMGN1-217ENST00000489072 CYP4F30PQ9H0H9 118 aa11.46□□□□□ -0.57
HMGN1-217ENST00000489072 CSAG1Q6PB30 78 aa11.44□□□□□ -0.58
HMGN1-217ENST00000489072 TRAV22A0A0B4J277 110 aa11.42□□□□□ -0.58
HMGN1-217ENST00000489072 ATP5EP2Q5VTU8 51 aa11.42□□□□□ -0.58
HMGN1-217ENST00000489072 FAM236AA0A1B0GUQ0 79 aa11.4□□□□□ -0.58
HMGN1-217ENST00000489072 FAM236BA0A1B0GV22 79 aa11.4□□□□□ -0.58
HMGN1-217ENST00000489072 MACF1Q9UPN3 7388 aaKnown RBP11.39□□□□□ -0.59
HMGN1-217ENST00000489072 HIST1H4AP62805 103 aaKnown RBP11.37□□□□□ -0.59
HMGN1-217ENST00000489072 LOC101927531A0A1B0GV80 90 aa11.36□□□□□ -0.59
HMGN1-217ENST00000489072 A0A087WVE0 104 aa11.31□□□□□ -0.6
HMGN1-217ENST00000489072 UQCRQO14949 82 aa11.29□□□□□ -0.6
HMGN1-217ENST00000489072 SYNE2Q8WXH0 6885 aaKnown RBP11.28□□□□□ -0.6
HMGN1-217ENST00000489072 H0Y9P7 68 aa11.26□□□□□ -0.61
HMGN1-217ENST00000489072 SPRR2GQ9BYE4 73 aa11.25□□□□□ -0.61
HMGN1-217ENST00000489072 LINC00643Q86TS7 51 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms