RNA–Protein interactions for RNA: ENST00000487996.5

HLA-DMB-261, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,746 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-261ENST00000487996 KRTAP29-1A8MX34 341 aaPredicted RBP6.15□□□□□ -1.42
HLA-DMB-261ENST00000487996 RPS29P62273 56 aaKnown RBP6.15□□□□□ -1.42
HLA-DMB-261ENST00000487996 LIMD2Q9BT23 127 aa6.15□□□□□ -1.42
HLA-DMB-261ENST00000487996 HRCT1Q6UXD1 115 aa6.14□□□□□ -1.43
HLA-DMB-261ENST00000487996 A0A087WSZ3 146 aa6.13□□□□□ -1.43
HLA-DMB-261ENST00000487996 Q5XG85 94 aa6.12□□□□□ -1.43
HLA-DMB-261ENST00000487996 V9GYY9 64 aa6.12□□□□□ -1.43
HLA-DMB-261ENST00000487996 LRP1Q07954 4544 aaKnown RBP6.11□□□□□ -1.43
HLA-DMB-261ENST00000487996 FAT3Q8TDW7 4589 aa6.11□□□□□ -1.43
HLA-DMB-261ENST00000487996 UBL5Q9BZL1 73 aa6.11□□□□□ -1.43
HLA-DMB-261ENST00000487996 PRO0628Q9UI54 55 aa6.11□□□□□ -1.43
HLA-DMB-261ENST00000487996 MT1HL1P0DM35 61 aa6.1□□□□□ -1.43
HLA-DMB-261ENST00000487996 NREPQ16612 68 aa6.08□□□□□ -1.44
HLA-DMB-261ENST00000487996 ASB16-AS1Q495Z4 193 aa6.08□□□□□ -1.44
HLA-DMB-261ENST00000487996 TNXBP22105 4242 aa6.08□□□□□ -1.44
HLA-DMB-261ENST00000487996 LINC00846Q9NV44 126 aa6.08□□□□□ -1.44
HLA-DMB-261ENST00000487996 Q6ZVQ6 151 aa6.05□□□□□ -1.44
HLA-DMB-261ENST00000487996 LCE1DQ5T752 114 aa6.05□□□□□ -1.44
HLA-DMB-261ENST00000487996 LINC00472Q9H8W2 130 aa6.02□□□□□ -1.45
HLA-DMB-261ENST00000487996 BPY2O14599 106 aa6.02□□□□□ -1.45
HLA-DMB-261ENST00000487996 ATP5EP2Q5VTU8 51 aa6.02□□□□□ -1.45
HLA-DMB-261ENST00000487996 C1orf195Q5TG92 126 aa6.01□□□□□ -1.45
HLA-DMB-261ENST00000487996 LINC00643Q86TS7 51 aa6.01□□□□□ -1.45
HLA-DMB-261ENST00000487996 HMCN2Q8NDA2 5059 aa6.01□□□□□ -1.45
HLA-DMB-261ENST00000487996 H3BS24 57 aa6□□□□□ -1.45
HLA-DMB-261ENST00000487996 UQCRQO14949 82 aa5.99□□□□□ -1.45
HLA-DMB-261ENST00000487996 IGKV4-1P06312 121 aa5.99□□□□□ -1.45
HLA-DMB-261ENST00000487996 CXCL6P80162 114 aa5.99□□□□□ -1.45
HLA-DMB-261ENST00000487996 Q96NJ1 140 aa5.99□□□□□ -1.45
HLA-DMB-261ENST00000487996 FP248Q71RG6 208 aaPredicted RBP5.99□□□□□ -1.45
HLA-DMB-261ENST00000487996 NDUFB1O75438 58 aa5.98□□□□□ -1.45
HLA-DMB-261ENST00000487996 KRTAP4-7Q9BYR0 210 aa5.98□□□□□ -1.45
HLA-DMB-261ENST00000487996 LCE4AQ5TA78 99 aa5.97□□□□□ -1.45
HLA-DMB-261ENST00000487996 C4orf26Q17RF5 130 aa5.96□□□□□ -1.45
HLA-DMB-261ENST00000487996 DEFB116Q30KQ4 102 aa5.96□□□□□ -1.45
HLA-DMB-261ENST00000487996 A8MWP4 228 aa5.96□□□□□ -1.46
HLA-DMB-261ENST00000487996 TMEM258P61165 79 aa5.96□□□□□ -1.46
HLA-DMB-261ENST00000487996 UBR4Q5T4S7 5183 aa5.95□□□□□ -1.46
HLA-DMB-261ENST00000487996 RETNLBQ9BQ08 111 aa5.95□□□□□ -1.46
HLA-DMB-261ENST00000487996 IMUPQ9GZP8 106 aa5.94□□□□□ -1.46
HLA-DMB-261ENST00000487996 DSCR10P59022 87 aa5.94□□□□□ -1.46
HLA-DMB-261ENST00000487996 IGKV3D-7A0A0C4DH55 119 aa5.93□□□□□ -1.46
HLA-DMB-261ENST00000487996 FAM236AA0A1B0GUQ0 79 aa5.92□□□□□ -1.46
HLA-DMB-261ENST00000487996 FAM236BA0A1B0GV22 79 aa5.92□□□□□ -1.46
HLA-DMB-261ENST00000487996 A0A1B0GVX0 72 aa5.92□□□□□ -1.46
HLA-DMB-261ENST00000487996 PRR15Q8IV56 129 aa5.92□□□□□ -1.46
HLA-DMB-261ENST00000487996 IGLV7-46A0A075B6I9 117 aa5.91□□□□□ -1.46
HLA-DMB-261ENST00000487996 PRR4Q16378 134 aa5.91□□□□□ -1.46
HLA-DMB-261ENST00000487996 C8orf87E5RJ46 101 aa5.91□□□□□ -1.46
HLA-DMB-261ENST00000487996 K7EQZ3 153 aa5.91□□□□□ -1.46
HLA-DMB-261ENST00000487996 IGHV6-1A0A0B4J1U7 121 aa5.9□□□□□ -1.47
HLA-DMB-261ENST00000487996 COX7CP15954 63 aa5.89□□□□□ -1.47
HLA-DMB-261ENST00000487996 HIST1H4AP62805 103 aaKnown RBP5.89□□□□□ -1.47
HLA-DMB-261ENST00000487996 FAM236DA0A1B0GTK5 79 aa5.88□□□□□ -1.47
HLA-DMB-261ENST00000487996 FAM236CP0DP71 79 aa5.88□□□□□ -1.47
HLA-DMB-261ENST00000487996 KRTAP19-4Q3LI73 84 aa5.88□□□□□ -1.47
HLA-DMB-261ENST00000487996 Q8N9L7 120 aa5.88□□□□□ -1.47
HLA-DMB-261ENST00000487996 LINC00313P59037 77 aa5.88□□□□□ -1.47
HLA-DMB-261ENST00000487996 KRTAP4-9Q9BYQ8 210 aa5.87□□□□□ -1.47
HLA-DMB-261ENST00000487996 C8orf17Q9NRJ1 99 aa5.86□□□□□ -1.47
HLA-DMB-261ENST00000487996 HCG22E2RYF7 251 aa5.85□□□□□ -1.47
HLA-DMB-261ENST00000487996 KRTAP9-7A8MTY7 169 aa5.85□□□□□ -1.47
HLA-DMB-261ENST00000487996 TPRXLQ17RH7 258 aa5.85□□□□□ -1.47
HLA-DMB-261ENST00000487996 MMP24-AS1A0A0U1RRL7 71 aa5.83□□□□□ -1.48
HLA-DMB-261ENST00000487996 hDV103S1A0JD37 113 aa5.83□□□□□ -1.48
HLA-DMB-261ENST00000487996 ATOX1O00244 68 aa5.82□□□□□ -1.48
HLA-DMB-261ENST00000487996 KRTAP13-3Q3SY46 172 aa5.82□□□□□ -1.48
HLA-DMB-261ENST00000487996 CASC2Q6XLA1 102 aa5.82□□□□□ -1.48
HLA-DMB-261ENST00000487996 C9orf92A6NGG3 77 aa5.82□□□□□ -1.48
HLA-DMB-261ENST00000487996 TMEM254Q8TBM7 123 aa5.82□□□□□ -1.48
HLA-DMB-261ENST00000487996 A0A087WVE0 104 aa5.81□□□□□ -1.48
HLA-DMB-261ENST00000487996 WFDC13Q8IUB5 93 aa5.81□□□□□ -1.48
HLA-DMB-261ENST00000487996 NOTCH2NLQ7Z3S9 236 aa5.8□□□□□ -1.48
HLA-DMB-261ENST00000487996 MRPL34Q9BQ48 92 aaKnown RBP5.8□□□□□ -1.48
HLA-DMB-261ENST00000487996 LRP2P98164 4655 aa5.8□□□□□ -1.48
HLA-DMB-261ENST00000487996 PMAIP1Q13794 54 aa5.79□□□□□ -1.48
HLA-DMB-261ENST00000487996 SERP1Q9Y6X1 66 aa5.78□□□□□ -1.48
HLA-DMB-261ENST00000487996 KRTAP16-1A8MUX0 517 aa5.77□□□□□ -1.49
HLA-DMB-261ENST00000487996 SMIM26A0A096LP01 95 aa5.76□□□□□ -1.49
HLA-DMB-261ENST00000487996 Q8N9P0 234 aaPredicted RBP5.76□□□□□ -1.49
HLA-DMB-261ENST00000487996 C20orf166-AS1Q96NR2 134 aa5.76□□□□□ -1.49
HLA-DMB-261ENST00000487996 NDUFS5O43920 106 aa5.75□□□□□ -1.49
HLA-DMB-261ENST00000487996 Q75L30 129 aa5.75□□□□□ -1.49
HLA-DMB-261ENST00000487996 RNF213Q63HN8 5207 aa5.75□□□□□ -1.49
HLA-DMB-261ENST00000487996 SERP2Q8N6R1 65 aa5.74□□□□□ -1.49
HLA-DMB-261ENST00000487996 TP53AIP1Q9HCN2 124 aa5.74□□□□□ -1.49
HLA-DMB-261ENST00000487996 A0A0U1RQV1 116 aa5.74□□□□□ -1.49
HLA-DMB-261ENST00000487996 A8MUU9 505 aa5.74□□□□□ -1.49
HLA-DMB-261ENST00000487996 BRK1Q8WUW1 75 aa5.74□□□□□ -1.49
HLA-DMB-261ENST00000487996 KRTAP4-2Q9BYR5 136 aa5.74□□□□□ -1.49
HLA-DMB-261ENST00000487996 RPL37P61927 97 aaKnown RBP5.71□□□□□ -1.49
HLA-DMB-261ENST00000487996 ATP11AUNQ6ZP68 121 aa5.7□□□□□ -1.5
HLA-DMB-261ENST00000487996 CYSTM1Q9H1C7 97 aa5.68□□□□□ -1.5
HLA-DMB-261ENST00000487996 SEC61BP60468 96 aaKnown RBP5.68□□□□□ -1.5
HLA-DMB-261ENST00000487996 KRTAP4-11Q9BYQ6 195 aa5.68□□□□□ -1.5
HLA-DMB-261ENST00000487996 ZCCHC13Q8WW36 166 aaKnown RBP5.67□□□□□ -1.5
HLA-DMB-261ENST00000487996 OCR1Q9BZK8 76 aa5.67□□□□□ -1.5
HLA-DMB-261ENST00000487996 LPAP08519 4548 aa5.66□□□□□ -1.5
HLA-DMB-261ENST00000487996 TRAV7A0A075B6U4 112 aa5.65□□□□□ -1.51
HLA-DMB-261ENST00000487996 TRAV22A0A0B4J277 110 aa5.65□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms