RNA–Protein interactions for RNA: ENST00000487245.5

HLA-C-208, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,880 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-208ENST00000487245 TGP01266 2768 aa15.41■□□□□ 0.06
HLA-C-208ENST00000487245 Q6ZSA8 131 aa15.41■□□□□ 0.06
HLA-C-208ENST00000487245 BRK1Q8WUW1 75 aa15.41■□□□□ 0.06
HLA-C-208ENST00000487245 MRPL34Q9BQ48 92 aaKnown RBP15.41■□□□□ 0.06
HLA-C-208ENST00000487245 ALMS1Q8TCU4 4167 aa15.35■□□□□ 0.05
HLA-C-208ENST00000487245 KRTAP10-1P60331 282 aa15.33■□□□□ 0.05
HLA-C-208ENST00000487245 C1orf195Q5TG92 126 aa15.32■□□□□ 0.04
HLA-C-208ENST00000487245 NDUFS5O43920 106 aa15.3■□□□□ 0.04
HLA-C-208ENST00000487245 A0A087X002 238 aa15.29■□□□□ 0.04
HLA-C-208ENST00000487245 NOTCH2NLQ7Z3S9 236 aa15.29■□□□□ 0.04
HLA-C-208ENST00000487245 COA5Q86WW8 74 aa15.25■□□□□ 0.03
HLA-C-208ENST00000487245 Q8N9P0 234 aaPredicted RBP15.25■□□□□ 0.03
HLA-C-208ENST00000487245 PCOTHQ58A44 107 aa15.25■□□□□ 0.03
HLA-C-208ENST00000487245 PSPHP1O15172 72 aa15.24■□□□□ 0.03
HLA-C-208ENST00000487245 LIMD2Q9BT23 127 aa15.24■□□□□ 0.03
HLA-C-208ENST00000487245 DNAH11Q96DT5 4516 aa15.22■□□□□ 0.03
HLA-C-208ENST00000487245 C8orf87E5RJ46 101 aa15.21■□□□□ 0.03
HLA-C-208ENST00000487245 SPINK6Q6UWN8 80 aa15.21■□□□□ 0.03
HLA-C-208ENST00000487245 DNAH5Q8TE73 4624 aa15.21■□□□□ 0.03
HLA-C-208ENST00000487245 FRAS1Q86XX4 4008 aa15.21■□□□□ 0.03
HLA-C-208ENST00000487245 A8MUN3 132 aa15.18■□□□□ 0.02
HLA-C-208ENST00000487245 LOC101927531A0A1B0GV80 90 aa15.18■□□□□ 0.02
HLA-C-208ENST00000487245 KRTAP13-3Q3SY46 172 aa15.18■□□□□ 0.02
HLA-C-208ENST00000487245 Q5VV11 94 aa15.16■□□□□ 0.02
HLA-C-208ENST00000487245 KRTAP13-2Q52LG2 175 aa15.15■□□□□ 0.02
HLA-C-208ENST00000487245 Q5W150 140 aa15.09■□□□□ 0.01
HLA-C-208ENST00000487245 PKD1P98161 4303 aa15.07■□□□□ 0
HLA-C-208ENST00000487245 KRTAP1-4P0C5Y4 121 aa15.06■□□□□ 0
HLA-C-208ENST00000487245 PRR15LQ9BU68 103 aa15.03■□□□□ -0
HLA-C-208ENST00000487245 HRES1P13985 223 aa15.03■□□□□ -0
HLA-C-208ENST00000487245 FAT2Q9NYQ8 4349 aa15.01□□□□□ -0.01
HLA-C-208ENST00000487245 LINC00313P59037 77 aa15□□□□□ -0.01
HLA-C-208ENST00000487245 Q75L30 129 aa15□□□□□ -0.01
HLA-C-208ENST00000487245 LINC01558Q9Y6Z2 57 aa14.99□□□□□ -0.01
HLA-C-208ENST00000487245 CHKB-CPT1BH3BT56 60 aa14.95□□□□□ -0.02
HLA-C-208ENST00000487245 FAM229AH3BQW9 127 aa14.94□□□□□ -0.02
HLA-C-208ENST00000487245 PLA2G1BP04054 148 aaKnown RBP14.94□□□□□ -0.02
HLA-C-208ENST00000487245 C4orf48Q5BLP8 95 aa14.93□□□□□ -0.02
HLA-C-208ENST00000487245 LRP1BQ9NZR2 4599 aa14.92□□□□□ -0.02
HLA-C-208ENST00000487245 HYDINQ4G0P3 5121 aa14.92□□□□□ -0.02
HLA-C-208ENST00000487245 TYMSOSQ8TAI1 123 aa14.91□□□□□ -0.02
HLA-C-208ENST00000487245 SPINK1P00995 79 aa14.86□□□□□ -0.03
HLA-C-208ENST00000487245 KRTAP16-1A8MUX0 517 aa14.86□□□□□ -0.03
HLA-C-208ENST00000487245 SPAG11AQ6PDA7 123 aa14.85□□□□□ -0.03
HLA-C-208ENST00000487245 ACYP2P14621 99 aa14.83□□□□□ -0.04
HLA-C-208ENST00000487245 IGKV2-30P06310 120 aa14.81□□□□□ -0.04
HLA-C-208ENST00000487245 DMAC1Q96GE9 116 aa14.8□□□□□ -0.04
HLA-C-208ENST00000487245 RPS29P62273 56 aaKnown RBP14.76□□□□□ -0.05
HLA-C-208ENST00000487245 A6NED7 52 aa14.75□□□□□ -0.05
HLA-C-208ENST00000487245 A8MU10 97 aa14.75□□□□□ -0.05
HLA-C-208ENST00000487245 A0A1B0GVY2 172 aa14.73□□□□□ -0.05
HLA-C-208ENST00000487245 LCA10Q71F78 164 aa14.73□□□□□ -0.05
HLA-C-208ENST00000487245 VPS13BQ7Z7G8 4022 aa14.73□□□□□ -0.05
HLA-C-208ENST00000487245 LINC00304Q8N9R0 145 aa14.71□□□□□ -0.05
HLA-C-208ENST00000487245 PRR26Q8N8Z3 221 aa14.7□□□□□ -0.06
HLA-C-208ENST00000487245 CDC42SE1Q9NRR8 79 aa14.7□□□□□ -0.06
HLA-C-208ENST00000487245 ATP11AUNQ6ZP68 121 aa14.67□□□□□ -0.06
HLA-C-208ENST00000487245 RETNLBQ9BQ08 111 aa14.66□□□□□ -0.06
HLA-C-208ENST00000487245 SACSQ9NZJ4 4579 aa14.65□□□□□ -0.06
HLA-C-208ENST00000487245 SMR3BP02814 79 aaPredicted RBP14.63□□□□□ -0.07
HLA-C-208ENST00000487245 PMAIP1Q13794 54 aa14.63□□□□□ -0.07
HLA-C-208ENST00000487245 SPINK7P58062 85 aa14.55□□□□□ -0.08
HLA-C-208ENST00000487245 KRTAP10-4P60372 401 aaPredicted RBP14.53□□□□□ -0.08
HLA-C-208ENST00000487245 SPTSSBQ8NFR3 76 aa14.49□□□□□ -0.09
HLA-C-208ENST00000487245 DYNC1H1Q14204 4646 aaKnown RBP14.49□□□□□ -0.09
HLA-C-208ENST00000487245 IGKV2D-30A0A075B6S6 120 aa14.48□□□□□ -0.09
HLA-C-208ENST00000487245 RYR2Q92736 4967 aa14.48□□□□□ -0.09
HLA-C-208ENST00000487245 PKHD1P08F94 4074 aa14.47□□□□□ -0.09
HLA-C-208ENST00000487245 KMT2CQ8NEZ4 4911 aaKnown RBP14.46□□□□□ -0.09
HLA-C-208ENST00000487245 A6NN06 94 aa14.43□□□□□ -0.1
HLA-C-208ENST00000487245 C7orf65Q6ZTY9 151 aa14.37□□□□□ -0.11
HLA-C-208ENST00000487245 A0A1B0GU69 56 aa14.36□□□□□ -0.11
HLA-C-208ENST00000487245 KTN1-AS1Q86SY8 53 aa14.34□□□□□ -0.11
HLA-C-208ENST00000487245 APOBP04114 4563 aaKnown RBP14.31□□□□□ -0.12
HLA-C-208ENST00000487245 C20orf166-AS1Q96NR2 134 aa14.28□□□□□ -0.12
HLA-C-208ENST00000487245 A8MUU9 505 aa14.27□□□□□ -0.12
HLA-C-208ENST00000487245 PKHD1L1Q86WI1 4243 aa14.23□□□□□ -0.13
HLA-C-208ENST00000487245 SPATA8Q6RVD6 105 aa14.21□□□□□ -0.13
HLA-C-208ENST00000487245 C9orf92A6NGG3 77 aa14.21□□□□□ -0.14
HLA-C-208ENST00000487245 RYR3Q15413 4870 aa14.17□□□□□ -0.14
HLA-C-208ENST00000487245 FAT1Q14517 4588 aa14.17□□□□□ -0.14
HLA-C-208ENST00000487245 SEC61GP60059 68 aa14.14□□□□□ -0.15
HLA-C-208ENST00000487245 UQCR11O14957 56 aa14.13□□□□□ -0.15
HLA-C-208ENST00000487245 Q8N1X5 172 aa14.12□□□□□ -0.15
HLA-C-208ENST00000487245 MIR22HGQ0VDD5 57 aa14.07□□□□□ -0.16
HLA-C-208ENST00000487245 KRTAP10-8P60410 259 aa14.05□□□□□ -0.16
HLA-C-208ENST00000487245 Q5VSD8 79 aa14.01□□□□□ -0.17
HLA-C-208ENST00000487245 FLG2Q5D862 2391 aaPredicted RBP13.95□□□□□ -0.18
HLA-C-208ENST00000487245 KRTAP3-1Q9BYR8 98 aa13.92□□□□□ -0.18
HLA-C-208ENST00000487245 RBM12B-AS1Q9P1G2 102 aa13.9□□□□□ -0.18
HLA-C-208ENST00000487245 COX6B2Q6YFQ2 88 aa13.76□□□□□ -0.21
HLA-C-208ENST00000487245 TNXBP22105 4242 aa13.74□□□□□ -0.21
HLA-C-208ENST00000487245 HSPG2P98160 4391 aa13.74□□□□□ -0.21
HLA-C-208ENST00000487245 FAT3Q8TDW7 4589 aa13.73□□□□□ -0.21
HLA-C-208ENST00000487245 RPL37P61927 97 aaKnown RBP13.71□□□□□ -0.21
HLA-C-208ENST00000487245 EPPK1P58107 5090 aaKnown RBP13.66□□□□□ -0.22
HLA-C-208ENST00000487245 RYR1P21817 5038 aa13.63□□□□□ -0.23
HLA-C-208ENST00000487245 LRP1Q07954 4544 aaKnown RBP13.62□□□□□ -0.23
HLA-C-208ENST00000487245 H0YAA0 97 aa13.62□□□□□ -0.23
HLA-C-208ENST00000487245 A0A1B0GU33 70 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms