RNA–Protein interactions for RNA: ENST00000486711.1

SMC4-218, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 621 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-218ENST00000486711 TPRP12270 2363 aaKnown RBP0.49□□□□□ -2.33
SMC4-218ENST00000486711 ABCA4P78363 2273 aa0.49□□□□□ -2.33
SMC4-218ENST00000486711 LAMA5O15230 3695 aa0.49□□□□□ -2.33
SMC4-218ENST00000486711 APCP25054 2843 aa0.49□□□□□ -2.33
SMC4-218ENST00000486711 LINC00472Q9H8W2 130 aa0.49□□□□□ -2.33
SMC4-218ENST00000486711 ADGRG4Q8IZF6 3080 aa0.49□□□□□ -2.33
SMC4-218ENST00000486711 BOD1L1Q8NFC6 3051 aa0.49□□□□□ -2.33
SMC4-218ENST00000486711 FRYQ5TBA9 3013 aa0.49□□□□□ -2.33
SMC4-218ENST00000486711 MGAQ8IWI9 3026 aa0.49□□□□□ -2.33
SMC4-218ENST00000486711 ZFHX4Q86UP3 3567 aa0.49□□□□□ -2.33
SMC4-218ENST00000486711 PLCE1Q9P212 2302 aa0.49□□□□□ -2.33
SMC4-218ENST00000486711 RELNP78509 3460 aa0.49□□□□□ -2.33
SMC4-218ENST00000486711 SPEGQ15772 3267 aa0.49□□□□□ -2.33
SMC4-218ENST00000486711 SMG1Q96Q15 3661 aaKnown RBP0.49□□□□□ -2.33
SMC4-218ENST00000486711 CHD7Q9P2D1 2997 aa0.48□□□□□ -2.33
SMC4-218ENST00000486711 FAM186AA6NE01 2351 aa0.48□□□□□ -2.33
SMC4-218ENST00000486711 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.48□□□□□ -2.334e-7■■■□□ 15.3
SMC4-218ENST00000486711 KNL1Q8NG31 2342 aa0.48□□□□□ -2.33
SMC4-218ENST00000486711 PIEZO2Q9H5I5 2752 aa0.48□□□□□ -2.33
SMC4-218ENST00000486711 DOPEY2Q9Y3R5 2298 aa0.48□□□□□ -2.33
SMC4-218ENST00000486711 CFAP47Q6ZTR5 3102 aa0.48□□□□□ -2.33
SMC4-218ENST00000486711 CFAP54Q96N23 3096 aa0.48□□□□□ -2.33
SMC4-218ENST00000486711 MMP24-AS1A0A0U1RRL7 71 aa0.48□□□□□ -2.33
SMC4-218ENST00000486711 H0YAA0 97 aa0.48□□□□□ -2.33
SMC4-218ENST00000486711 KALRNO60229 2985 aa0.48□□□□□ -2.33
SMC4-218ENST00000486711 CLPSL2Q6UWE3 100 aa0.48□□□□□ -2.33
SMC4-218ENST00000486711 ANKHD1Q8IWZ3 2542 aaKnown RBP0.48□□□□□ -2.33
SMC4-218ENST00000486711 LOC400499M0QZD8 3231 aa0.48□□□□□ -2.33
SMC4-218ENST00000486711 SPTBN1Q01082 2364 aaKnown RBP0.48□□□□□ -2.33
SMC4-218ENST00000486711 ABCA1O95477 2261 aa0.48□□□□□ -2.33
SMC4-218ENST00000486711 TRRAPQ9Y4A5 3859 aa0.47□□□□□ -2.33
SMC4-218ENST00000486711 ATMQ13315 3056 aa0.47□□□□□ -2.33
SMC4-218ENST00000486711 MUC3AQ02505 3323 aa0.47□□□□□ -2.33
SMC4-218ENST00000486711 PCNX1Q96RV3 2341 aa0.47□□□□□ -2.33
SMC4-218ENST00000486711 ANK2Q01484 3957 aa0.47□□□□□ -2.33
SMC4-218ENST00000486711 A0A087WTM6 91 aa0.47□□□□□ -2.33
SMC4-218ENST00000486711 PHGR1C9JFL3 82 aa0.47□□□□□ -2.33
SMC4-218ENST00000486711 DEFB136Q30KP8 78 aa0.47□□□□□ -2.33
SMC4-218ENST00000486711 DEFB104AQ8WTQ1 72 aa0.47□□□□□ -2.33
SMC4-218ENST00000486711 Q96NJ1 140 aa0.47□□□□□ -2.33
SMC4-218ENST00000486711 CACNA1HO95180 2353 aa0.47□□□□□ -2.33
SMC4-218ENST00000486711 APC2O95996 2303 aa0.47□□□□□ -2.33
SMC4-218ENST00000486711 ACACAQ13085 2346 aa0.47□□□□□ -2.33
SMC4-218ENST00000486711 PRUNE2Q8WUY3 3088 aa0.46□□□□□ -2.34
SMC4-218ENST00000486711 MED13LQ71F56 2210 aa0.46□□□□□ -2.34
SMC4-218ENST00000486711 SPTA1P02549 2419 aa0.46□□□□□ -2.34
SMC4-218ENST00000486711 EP300Q09472 2414 aaPredicted RBP0.46□□□□□ -2.34
SMC4-218ENST00000486711 CSMD2Q7Z408 3487 aa0.46□□□□□ -2.34
SMC4-218ENST00000486711 EYSQ5T1H1 3165 aa0.46□□□□□ -2.34
SMC4-218ENST00000486711 AKAP6Q13023 2319 aa0.46□□□□□ -2.34
SMC4-218ENST00000486711 SVEP1Q4LDE5 3571 aa0.46□□□□□ -2.34
SMC4-218ENST00000486711 A0A096LNI7 61 aa0.46□□□□□ -2.34
SMC4-218ENST00000486711 PRLHP81277 87 aa0.46□□□□□ -2.34
SMC4-218ENST00000486711 H1FX-AS1Q4G0G2 97 aa0.46□□□□□ -2.34
SMC4-218ENST00000486711 APLNQ9ULZ1 77 aa0.46□□□□□ -2.34
SMC4-218ENST00000486711 S4R3F8 94 aa0.46□□□□□ -2.34
SMC4-218ENST00000486711 PKDREJQ9NTG1 2253 aa0.46□□□□□ -2.34
SMC4-218ENST00000486711 DMXL2Q8TDJ6 3036 aa0.46□□□□□ -2.34
SMC4-218ENST00000486711 SPTAN1Q13813 2472 aaKnown RBP0.46□□□□□ -2.34
SMC4-218ENST00000486711 CEP250Q9BV73 2442 aa0.46□□□□□ -2.34
SMC4-218ENST00000486711 LYSTQ99698 3801 aa0.46□□□□□ -2.34
SMC4-218ENST00000486711 DMXL1Q9Y485 3027 aa0.46□□□□□ -2.34
SMC4-218ENST00000486711 CMYA5Q8N3K9 4069 aa0.45□□□□□ -2.34
SMC4-218ENST00000486711 CSMD1Q96PZ7 3565 aa0.45□□□□□ -2.34
SMC4-218ENST00000486711 SPTBN2O15020 2390 aa0.45□□□□□ -2.34
SMC4-218ENST00000486711 TNP1P09430 55 aa0.45□□□□□ -2.34
SMC4-218ENST00000486711 CRYBG3Q68DQ2 2970 aa0.45□□□□□ -2.34
SMC4-218ENST00000486711 CHD9Q3L8U1 2897 aa0.45□□□□□ -2.34
SMC4-218ENST00000486711 PRRC2CQ9Y520 2896 aaKnown RBP0.45□□□□□ -2.34
SMC4-218ENST00000486711 COL12A1Q99715 3063 aa0.45□□□□□ -2.34
SMC4-218ENST00000486711 CREBBPQ92793 2442 aa0.45□□□□□ -2.34
SMC4-218ENST00000486711 CNOT1A5YKK6 2376 aaKnown RBP0.45□□□□□ -2.34
SMC4-218ENST00000486711 F8P00451 2351 aa0.45□□□□□ -2.34
SMC4-218ENST00000486711 C2CD3Q4AC94 2353 aa0.45□□□□□ -2.34
SMC4-218ENST00000486711 DNAH3Q8TD57 4116 aa0.45□□□□□ -2.34
SMC4-218ENST00000486711 CSPG4Q6UVK1 2322 aa0.44□□□□□ -2.34
SMC4-218ENST00000486711 DNAH7Q8WXX0 4024 aa0.44□□□□□ -2.34
SMC4-218ENST00000486711 CELSR1Q9NYQ6 3014 aa0.44□□□□□ -2.34
SMC4-218ENST00000486711 WNK1Q9H4A3 2382 aa0.44□□□□□ -2.34
SMC4-218ENST00000486711 DEFB4AO15263 64 aa0.44□□□□□ -2.34
SMC4-218ENST00000486711 DEFB1P60022 68 aa0.44□□□□□ -2.34
SMC4-218ENST00000486711 Q5VSD8 79 aa0.44□□□□□ -2.34
SMC4-218ENST00000486711 CUBNO60494 3623 aa0.44□□□□□ -2.34
SMC4-218ENST00000486711 USP24Q9UPU5 2620 aa0.44□□□□□ -2.34
SMC4-218ENST00000486711 ABCA2Q9BZC7 2435 aa0.44□□□□□ -2.34
SMC4-218ENST00000486711 NBASA2RRP1 2371 aa0.43□□□□□ -2.34
SMC4-218ENST00000486711 MEGF8Q7Z7M0 2845 aa0.43□□□□□ -2.34
SMC4-218ENST00000486711 PTPRQQ9UMZ3 2332 aa0.43□□□□□ -2.34
SMC4-218ENST00000486711 ANKRD17O75179 2603 aaKnown RBP0.43□□□□□ -2.34
SMC4-218ENST00000486711 TACC2O95359 2948 aa0.43□□□□□ -2.34
SMC4-218ENST00000486711 NBEAQ8NFP9 2946 aa0.43□□□□□ -2.34
SMC4-218ENST00000486711 VPS13DQ5THJ4 4388 aa0.43□□□□□ -2.34
SMC4-218ENST00000486711 CSMD3Q7Z407 3707 aa0.43□□□□□ -2.34
SMC4-218ENST00000486711 LRBAP50851 2863 aa0.43□□□□□ -2.34
SMC4-218ENST00000486711 HECTD4Q9Y4D8 3996 aa0.43□□□□□ -2.34
SMC4-218ENST00000486711 CEP290O15078 2479 aa0.42□□□□□ -2.34
SMC4-218ENST00000486711 DNAH6Q9C0G6 4158 aa0.42□□□□□ -2.34
SMC4-218ENST00000486711 DSPP15924 2871 aaKnown RBP0.42□□□□□ -2.34
SMC4-218ENST00000486711 VPS13BQ7Z7G8 4022 aa0.42□□□□□ -2.34
SMC4-218ENST00000486711 CENPEQ02224 2701 aa0.42□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms