RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 SPINK6Q6UWN8 80 aa3.22□□□□□ -1.89
COL17A1-206ENST00000483876 SS18L2Q9UHA2 77 aa3.22□□□□□ -1.89
COL17A1-206ENST00000483876 LINC00472Q9H8W2 130 aa3.21□□□□□ -1.9
COL17A1-206ENST00000483876 TNXBP22105 4242 aa3.2□□□□□ -1.9
COL17A1-206ENST00000483876 A0A087WVE0 104 aa3.2□□□□□ -1.9
COL17A1-206ENST00000483876 IGLV9-49A0A0B4J1Y8 123 aa3.2□□□□□ -1.9
COL17A1-206ENST00000483876 DSCR10P59022 87 aa3.2□□□□□ -1.9
COL17A1-206ENST00000483876 C9orf153Q5TBE3 101 aa3.2□□□□□ -1.9
COL17A1-206ENST00000483876 Q5XG85 94 aa3.2□□□□□ -1.9
COL17A1-206ENST00000483876 SERP2Q8N6R1 65 aa3.2□□□□□ -1.9
COL17A1-206ENST00000483876 A0A0G2JQZ4 141 aa3.19□□□□□ -1.9
COL17A1-206ENST00000483876 UQCRQO14949 82 aa3.19□□□□□ -1.9
COL17A1-206ENST00000483876 IGKV4-1P06312 121 aa3.19□□□□□ -1.9
COL17A1-206ENST00000483876 COX7CP15954 63 aa3.19□□□□□ -1.9
COL17A1-206ENST00000483876 MOBPQ13875 183 aa3.19□□□□□ -1.9
COL17A1-206ENST00000483876 ASB16-AS1Q495Z4 193 aa3.19□□□□□ -1.9
COL17A1-206ENST00000483876 LCE3BQ5TA77 95 aa3.19□□□□□ -1.9
COL17A1-206ENST00000483876 A8MWP4 228 aa3.18□□□□□ -1.9
COL17A1-206ENST00000483876 KRTAP1-4P0C5Y4 121 aa3.18□□□□□ -1.9
COL17A1-206ENST00000483876 ANAPC11Q9NYG5 84 aa3.18□□□□□ -1.9
COL17A1-206ENST00000483876 TRAV7A0A075B6U4 112 aa3.17□□□□□ -1.9
COL17A1-206ENST00000483876 KRTAP4-8A0A0G2JLE6 195 aa3.17□□□□□ -1.9
COL17A1-206ENST00000483876 NDUFB1O75438 58 aa3.17□□□□□ -1.9
COL17A1-206ENST00000483876 KRTAP10-4P60372 401 aaPredicted RBP3.17□□□□□ -1.9
COL17A1-206ENST00000483876 PRR15Q8IV56 129 aa3.17□□□□□ -1.9
COL17A1-206ENST00000483876 K7EQZ3 153 aa3.16□□□□□ -1.9
COL17A1-206ENST00000483876 KRTAP13-2Q52LG2 175 aa3.16□□□□□ -1.9
COL17A1-206ENST00000483876 Q96NJ1 140 aa3.16□□□□□ -1.9
COL17A1-206ENST00000483876 DNAH8Q96JB1 4490 aa3.16□□□□□ -1.9
COL17A1-206ENST00000483876 A0A087X002 238 aa3.15□□□□□ -1.91
COL17A1-206ENST00000483876 HCG22E2RYF7 251 aa3.15□□□□□ -1.91
COL17A1-206ENST00000483876 RPS29P62273 56 aaKnown RBP3.15□□□□□ -1.91
COL17A1-206ENST00000483876 Q8N9L7 120 aa3.15□□□□□ -1.91
COL17A1-206ENST00000483876 LPAP08519 4548 aa3.14□□□□□ -1.91
COL17A1-206ENST00000483876 CCDC179H3BU77 68 aa3.14□□□□□ -1.91
COL17A1-206ENST00000483876 SPINK1P00995 79 aa3.14□□□□□ -1.91
COL17A1-206ENST00000483876 SPAG11AQ6PDA7 123 aa3.14□□□□□ -1.91
COL17A1-206ENST00000483876 OCR1Q9BZK8 76 aa3.14□□□□□ -1.91
COL17A1-206ENST00000483876 DEFB116Q30KQ4 102 aa3.13□□□□□ -1.91
COL17A1-206ENST00000483876 C5orf47Q569G3 176 aa3.13□□□□□ -1.91
COL17A1-206ENST00000483876 HRCT1Q6UXD1 115 aa3.13□□□□□ -1.91
COL17A1-206ENST00000483876 TYMSOSQ8TAI1 123 aa3.13□□□□□ -1.91
COL17A1-206ENST00000483876 LIMD2Q9BT23 127 aa3.13□□□□□ -1.91
COL17A1-206ENST00000483876 KRTAP9-9Q9BYP9 154 aa3.13□□□□□ -1.91
COL17A1-206ENST00000483876 KRTAP9-4Q9BYQ2 154 aa3.13□□□□□ -1.91
COL17A1-206ENST00000483876 A0A1B0GVX0 72 aa3.12□□□□□ -1.91
COL17A1-206ENST00000483876 KLKP1Q107X0 134 aa3.12□□□□□ -1.91
COL17A1-206ENST00000483876 CASC2Q6XLA1 102 aa3.12□□□□□ -1.91
COL17A1-206ENST00000483876 C8orf87E5RJ46 101 aa3.11□□□□□ -1.91
COL17A1-206ENST00000483876 NDUFC1O43677 76 aa3.11□□□□□ -1.91
COL17A1-206ENST00000483876 TP53AIP1Q9HCN2 124 aa3.11□□□□□ -1.91
COL17A1-206ENST00000483876 MMP24-AS1A0A0U1RRL7 71 aa3.1□□□□□ -1.91
COL17A1-206ENST00000483876 hDV103S1A0JD37 113 aa3.1□□□□□ -1.91
COL17A1-206ENST00000483876 H3BPC8 53 aa3.1□□□□□ -1.91
COL17A1-206ENST00000483876 C1orf195Q5TG92 126 aa3.1□□□□□ -1.91
COL17A1-206ENST00000483876 C8orf17Q9NRJ1 99 aa3.1□□□□□ -1.91
COL17A1-206ENST00000483876 C20orf197Q8N268 126 aa3.09□□□□□ -1.91
COL17A1-206ENST00000483876 PRR26Q8N8Z3 221 aa3.09□□□□□ -1.91
COL17A1-206ENST00000483876 LINC00304Q8N9R0 145 aa3.09□□□□□ -1.91
COL17A1-206ENST00000483876 TMEM254Q8TBM7 123 aa3.09□□□□□ -1.91
COL17A1-206ENST00000483876 IGHV6-1A0A0B4J1U7 121 aa3.08□□□□□ -1.92
COL17A1-206ENST00000483876 WFDC13Q8IUB5 93 aa3.08□□□□□ -1.92
COL17A1-206ENST00000483876 KRTAP4-12Q9BQ66 201 aa3.08□□□□□ -1.92
COL17A1-206ENST00000483876 KRTAP4-7Q9BYR0 210 aa3.08□□□□□ -1.92
COL17A1-206ENST00000483876 MP68P56378 58 aa3.07□□□□□ -1.92
COL17A1-206ENST00000483876 LINC00313P59037 77 aa3.07□□□□□ -1.92
COL17A1-206ENST00000483876 KRTAP10-8P60410 259 aa3.07□□□□□ -1.92
COL17A1-206ENST00000483876 TMEM258P61165 79 aa3.07□□□□□ -1.92
COL17A1-206ENST00000483876 MRPL34Q9BQ48 92 aaKnown RBP3.07□□□□□ -1.92
COL17A1-206ENST00000483876 ZCCHC13Q8WW36 166 aaKnown RBP3.06□□□□□ -1.92
COL17A1-206ENST00000483876 H7BZZ5 65 aa3.05□□□□□ -1.92
COL17A1-206ENST00000483876 RPS28P62857 69 aaKnown RBP3.05□□□□□ -1.92
COL17A1-206ENST00000483876 NOTCH2NLQ7Z3S9 236 aa3.05□□□□□ -1.92
COL17A1-206ENST00000483876 Q8N9P0 234 aaPredicted RBP3.05□□□□□ -1.92
COL17A1-206ENST00000483876 SYNE2Q8WXH0 6885 aaKnown RBP3.04□□□□□ -1.92
COL17A1-206ENST00000483876 CYSTM1Q9H1C7 97 aa3.04□□□□□ -1.92
COL17A1-206ENST00000483876 SNURFQ9Y675 71 aa3.04□□□□□ -1.92
COL17A1-206ENST00000483876 TRAV22A0A0B4J277 110 aa3.03□□□□□ -1.92
COL17A1-206ENST00000483876 ATP5EP56381 51 aaPredicted RBP3.03□□□□□ -1.92
COL17A1-206ENST00000483876 SSPOA2VEC9 5147 aa3.03□□□□□ -1.92
COL17A1-206ENST00000483876 KRTAP16-1A8MUX0 517 aa3.02□□□□□ -1.93
COL17A1-206ENST00000483876 H0Y9P7 68 aa3.02□□□□□ -1.93
COL17A1-206ENST00000483876 C1orf64Q8NEQ6 169 aa3.02□□□□□ -1.93
COL17A1-206ENST00000483876 NDUFS5O43920 106 aa3.01□□□□□ -1.93
COL17A1-206ENST00000483876 KRTAP13-3Q3SY46 172 aa3.01□□□□□ -1.93
COL17A1-206ENST00000483876 SPANXA2-OT1Q8N9U9 137 aa3.01□□□□□ -1.93
COL17A1-206ENST00000483876 LINC00208Q96KT6 92 aa3.01□□□□□ -1.93
COL17A1-206ENST00000483876 FAM236DA0A1B0GTK5 79 aa3□□□□□ -1.93
COL17A1-206ENST00000483876 LOC101927531A0A1B0GV80 90 aa3□□□□□ -1.93
COL17A1-206ENST00000483876 FAM236CP0DP71 79 aa3□□□□□ -1.93
COL17A1-206ENST00000483876 FP248Q71RG6 208 aaPredicted RBP3□□□□□ -1.93
COL17A1-206ENST00000483876 Q5W150 140 aa2.98□□□□□ -1.93
COL17A1-206ENST00000483876 CYP4F30PQ9H0H9 118 aa2.98□□□□□ -1.93
COL17A1-206ENST00000483876 SERP1Q9Y6X1 66 aa2.98□□□□□ -1.93
COL17A1-206ENST00000483876 IGLV7-46A0A075B6I9 117 aa2.97□□□□□ -1.93
COL17A1-206ENST00000483876 A8MUU9 505 aa2.97□□□□□ -1.93
COL17A1-206ENST00000483876 LCE1DQ5T752 114 aa2.97□□□□□ -1.93
COL17A1-206ENST00000483876 C20orf166-AS1Q96NR2 134 aa2.97□□□□□ -1.93
COL17A1-206ENST00000483876 KRTAP4-2Q9BYR5 136 aa2.96□□□□□ -1.94
COL17A1-206ENST00000483876 MACF1Q9UPN3 7388 aaKnown RBP2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms