RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 A0A1B0GVX0 72 aa8.12□□□□□ -1.11
CCDC28B-205ENST00000483009 C9orf118A6NHY6 69 aa8.12□□□□□ -1.11
CCDC28B-205ENST00000483009 J3KT08 172 aa8.12□□□□□ -1.11
CCDC28B-205ENST00000483009 A0A1B0GW54 56 aa8.11□□□□□ -1.11
CCDC28B-205ENST00000483009 C8orf87E5RJ46 101 aa8.11□□□□□ -1.11
CCDC28B-205ENST00000483009 FLGP20930 4061 aaPredicted RBP8.1□□□□□ -1.11
CCDC28B-205ENST00000483009 TAX1BP3O14907 124 aa8.1□□□□□ -1.11
CCDC28B-205ENST00000483009 C14orf132Q9NPU4 83 aa8.1□□□□□ -1.11
CCDC28B-205ENST00000483009 A0A1W2PPM0 123 aa8.07□□□□□ -1.12
CCDC28B-205ENST00000483009 M0R2T5 61 aa8.07□□□□□ -1.12
CCDC28B-205ENST00000483009 H3BT86 120 aa8.06□□□□□ -1.12
CCDC28B-205ENST00000483009 NDUFB1O75438 58 aa8.05□□□□□ -1.12
CCDC28B-205ENST00000483009 KRTAP10-6P60371 365 aaPredicted RBP8.04□□□□□ -1.12
CCDC28B-205ENST00000483009 LORP23490 312 aaPredicted RBP8.03□□□□□ -1.12
CCDC28B-205ENST00000483009 LCE2DQ5TA82 110 aaPredicted RBP8.03□□□□□ -1.12
CCDC28B-205ENST00000483009 A8MWP4 228 aa8.02□□□□□ -1.13
CCDC28B-205ENST00000483009 MTURNQ8N3F0 131 aa8.02□□□□□ -1.13
CCDC28B-205ENST00000483009 NREPQ16612 68 aa7.99□□□□□ -1.13
CCDC28B-205ENST00000483009 IGKV3D-7A0A0C4DH55 119 aa7.98□□□□□ -1.13
CCDC28B-205ENST00000483009 C8orf17Q9NRJ1 99 aa7.98□□□□□ -1.13
CCDC28B-205ENST00000483009 SPCS1Q9Y6A9 102 aa7.98□□□□□ -1.13
CCDC28B-205ENST00000483009 Q8N9P0 234 aaPredicted RBP7.96□□□□□ -1.14
CCDC28B-205ENST00000483009 ZCCHC13Q8WW36 166 aaKnown RBP7.96□□□□□ -1.14
CCDC28B-205ENST00000483009 PRR15Q8IV56 129 aa7.95□□□□□ -1.14
CCDC28B-205ENST00000483009 HRES1P13985 223 aa7.94□□□□□ -1.14
CCDC28B-205ENST00000483009 COL5A1-AS1Q5SY13 56 aa7.94□□□□□ -1.14
CCDC28B-205ENST00000483009 KRTAP9-6A0A140TA67 174 aa7.92□□□□□ -1.14
CCDC28B-205ENST00000483009 FAM236DA0A1B0GTK5 79 aa7.92□□□□□ -1.14
CCDC28B-205ENST00000483009 FAM236CP0DP71 79 aa7.92□□□□□ -1.14
CCDC28B-205ENST00000483009 MPLKIPQ8TAP9 179 aa7.92□□□□□ -1.14
CCDC28B-205ENST00000483009 Q6ZVQ6 151 aa7.91□□□□□ -1.14
CCDC28B-205ENST00000483009 RBM12B-AS1Q9P1G2 102 aa7.91□□□□□ -1.14
CCDC28B-205ENST00000483009 SMCPP49901 116 aaPredicted RBP7.89□□□□□ -1.15
CCDC28B-205ENST00000483009 MMP24-AS1A0A0U1RRL7 71 aa7.88□□□□□ -1.15
CCDC28B-205ENST00000483009 TMEM254Q8TBM7 123 aa7.87□□□□□ -1.15
CCDC28B-205ENST00000483009 K7EP34 96 aa7.86□□□□□ -1.15
CCDC28B-205ENST00000483009 K7EQZ3 153 aa7.86□□□□□ -1.15
CCDC28B-205ENST00000483009 BPY2O14599 106 aa7.86□□□□□ -1.15
CCDC28B-205ENST00000483009 SPINK7P58062 85 aa7.86□□□□□ -1.15
CCDC28B-205ENST00000483009 MRPL34Q9BQ48 92 aaKnown RBP7.85□□□□□ -1.15
CCDC28B-205ENST00000483009 PRO0461Q9UI25 63 aa7.85□□□□□ -1.15
CCDC28B-205ENST00000483009 hDV103S1A0JD37 113 aa7.83□□□□□ -1.16
CCDC28B-205ENST00000483009 CRCT1Q9UGL9 99 aa7.78□□□□□ -1.16
CCDC28B-205ENST00000483009 PCP4L1A6NKN8 68 aa7.77□□□□□ -1.17
CCDC28B-205ENST00000483009 NDUFS5O43920 106 aa7.77□□□□□ -1.17
CCDC28B-205ENST00000483009 GTF2H5Q6ZYL4 71 aa7.77□□□□□ -1.17
CCDC28B-205ENST00000483009 KRTAP9-8Q9BYQ0 159 aa7.77□□□□□ -1.17
CCDC28B-205ENST00000483009 WFDC13Q8IUB5 93 aa7.76□□□□□ -1.17
CCDC28B-205ENST00000483009 Q8N9L7 120 aa7.76□□□□□ -1.17
CCDC28B-205ENST00000483009 UBL5Q9BZL1 73 aa7.75□□□□□ -1.17
CCDC28B-205ENST00000483009 LINC00846Q9NV44 126 aa7.75□□□□□ -1.17
CCDC28B-205ENST00000483009 FSIP2Q5CZC0 6907 aa7.74□□□□□ -1.17
CCDC28B-205ENST00000483009 CASC2Q6XLA1 102 aa7.72□□□□□ -1.17
CCDC28B-205ENST00000483009 F8W1H4 67 aa7.7□□□□□ -1.18
CCDC28B-205ENST00000483009 HCG22E2RYF7 251 aa7.68□□□□□ -1.18
CCDC28B-205ENST00000483009 MT2AP02795 61 aa7.68□□□□□ -1.18
CCDC28B-205ENST00000483009 ETDBQ3ZM63 59 aa7.67□□□□□ -1.18
CCDC28B-205ENST00000483009 Q5W150 140 aa7.67□□□□□ -1.18
CCDC28B-205ENST00000483009 IGKV2D-30A0A075B6S6 120 aa7.65□□□□□ -1.18
CCDC28B-205ENST00000483009 IGKV2-30P06310 120 aa7.65□□□□□ -1.18
CCDC28B-205ENST00000483009 C7orf65Q6ZTY9 151 aa7.65□□□□□ -1.18
CCDC28B-205ENST00000483009 CXCL6P80162 114 aa7.63□□□□□ -1.19
CCDC28B-205ENST00000483009 MT1FP04733 61 aa7.62□□□□□ -1.19
CCDC28B-205ENST00000483009 KRTAP10-10P60014 251 aa7.59□□□□□ -1.19
CCDC28B-205ENST00000483009 H1FX-AS1Q4G0G2 97 aa7.58□□□□□ -1.2
CCDC28B-205ENST00000483009 KRTAP9-3Q9BYQ3 159 aa7.53□□□□□ -1.2
CCDC28B-205ENST00000483009 USH2AO75445 5202 aa7.53□□□□□ -1.2
CCDC28B-205ENST00000483009 TP53AIP1Q9HCN2 124 aa7.51□□□□□ -1.21
CCDC28B-205ENST00000483009 ACYP1P07311 99 aa7.5□□□□□ -1.21
CCDC28B-205ENST00000483009 C4orf26Q17RF5 130 aa7.5□□□□□ -1.21
CCDC28B-205ENST00000483009 FAM240AA0A1B0GVK7 77 aa7.47□□□□□ -1.21
CCDC28B-205ENST00000483009 LCE2BO14633 110 aa7.47□□□□□ -1.21
CCDC28B-205ENST00000483009 SSPOA2VEC9 5147 aa7.44□□□□□ -1.22
CCDC28B-205ENST00000483009 ATP5EP2Q5VTU8 51 aa7.43□□□□□ -1.22
CCDC28B-205ENST00000483009 KRTAP3-1Q9BYR8 98 aa7.39□□□□□ -1.23
CCDC28B-205ENST00000483009 C1orf64Q8NEQ6 169 aa7.38□□□□□ -1.23
CCDC28B-205ENST00000483009 HIST1H4AP62805 103 aaKnown RBP7.36□□□□□ -1.23
CCDC28B-205ENST00000483009 TRAV22A0A0B4J277 110 aa7.35□□□□□ -1.23
CCDC28B-205ENST00000483009 A0A1B0GV90 55 aa7.35□□□□□ -1.23
CCDC28B-205ENST00000483009 CYP4F30PQ9H0H9 118 aa7.34□□□□□ -1.23
CCDC28B-205ENST00000483009 S4R3F8 94 aa7.34□□□□□ -1.23
CCDC28B-205ENST00000483009 LINC00643Q86TS7 51 aa7.33□□□□□ -1.24
CCDC28B-205ENST00000483009 LOC101927531A0A1B0GV80 90 aa7.32□□□□□ -1.24
CCDC28B-205ENST00000483009 C5orf47Q569G3 176 aa7.32□□□□□ -1.24
CCDC28B-205ENST00000483009 KRTAP19-1Q8IUB9 90 aa7.32□□□□□ -1.24
CCDC28B-205ENST00000483009 UQCRQO14949 82 aa7.3□□□□□ -1.24
CCDC28B-205ENST00000483009 CSAG1Q6PB30 78 aa7.28□□□□□ -1.24
CCDC28B-205ENST00000483009 A0A087WVE0 104 aa7.27□□□□□ -1.25
CCDC28B-205ENST00000483009 LCA10Q71F78 164 aa7.27□□□□□ -1.25
CCDC28B-205ENST00000483009 FCGBPQ9Y6R7 5405 aaPredicted RBP7.26□□□□□ -1.25
CCDC28B-205ENST00000483009 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.25□□□□□ -1.25
CCDC28B-205ENST00000483009 H0Y9P7 68 aa7.25□□□□□ -1.25
CCDC28B-205ENST00000483009 ATOX1O00244 68 aa7.25□□□□□ -1.25
CCDC28B-205ENST00000483009 FAM236AA0A1B0GUQ0 79 aa7.22□□□□□ -1.25
CCDC28B-205ENST00000483009 FAM236BA0A1B0GV22 79 aa7.22□□□□□ -1.25
CCDC28B-205ENST00000483009 KRTAP19-6Q3LI70 58 aa7.22□□□□□ -1.25
CCDC28B-205ENST00000483009 J3QR89 54 aa7.19□□□□□ -1.26
CCDC28B-205ENST00000483009 KRTAP3-3Q9BYR6 98 aa7.18□□□□□ -1.26
CCDC28B-205ENST00000483009 OCR1Q9BZK8 76 aa7.15□□□□□ -1.26
CCDC28B-205ENST00000483009 KRTAP9-7A8MTY7 169 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms