RNA–Protein interactions for RNA: ENST00000482056.2

C9orf3-218, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 1,951 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-218ENST00000482056 SSBP3-AS1Q7Z2R9 100 aa9.08□□□□□ -0.96
C9orf3-218ENST00000482056 SPINK6Q6UWN8 80 aa9.07□□□□□ -0.96
C9orf3-218ENST00000482056 DNAH2Q9P225 4427 aa9.07□□□□□ -0.96
C9orf3-218ENST00000482056 LY6G6CO95867 125 aa9.06□□□□□ -0.96
C9orf3-218ENST00000482056 A0A087X002 238 aa9.04□□□□□ -0.96
C9orf3-218ENST00000482056 LOC101927531A0A1B0GV80 90 aa9.04□□□□□ -0.96
C9orf3-218ENST00000482056 NOTCH2NLQ7Z3S9 236 aa9.04□□□□□ -0.96
C9orf3-218ENST00000482056 C8orf87E5RJ46 101 aa9.03□□□□□ -0.96
C9orf3-218ENST00000482056 Q5VV11 94 aa9.03□□□□□ -0.96
C9orf3-218ENST00000482056 PRR15LQ9BU68 103 aa9.02□□□□□ -0.97
C9orf3-218ENST00000482056 KMT2AQ03164 3969 aa9□□□□□ -0.97
C9orf3-218ENST00000482056 CHKB-CPT1BH3BT56 60 aa8.99□□□□□ -0.97
C9orf3-218ENST00000482056 FRAS1Q86XX4 4008 aa8.98□□□□□ -0.97
C9orf3-218ENST00000482056 FBN3Q75N90 2809 aa8.98□□□□□ -0.97
C9orf3-218ENST00000482056 MEGF8Q7Z7M0 2845 aa8.98□□□□□ -0.97
C9orf3-218ENST00000482056 TGP01266 2768 aa8.95□□□□□ -0.98
C9orf3-218ENST00000482056 KRTAP10-2P60368 255 aa8.95□□□□□ -0.98
C9orf3-218ENST00000482056 Q75L30 129 aa8.95□□□□□ -0.98
C9orf3-218ENST00000482056 DNAH6Q9C0G6 4158 aa8.94□□□□□ -0.98
C9orf3-218ENST00000482056 HRES1P13985 223 aa8.93□□□□□ -0.98
C9orf3-218ENST00000482056 LINC00313P59037 77 aa8.93□□□□□ -0.98
C9orf3-218ENST00000482056 KRTAP13-3Q3SY46 172 aa8.93□□□□□ -0.98
C9orf3-218ENST00000482056 Q5W150 140 aa8.93□□□□□ -0.98
C9orf3-218ENST00000482056 LINC01558Q9Y6Z2 57 aa8.92□□□□□ -0.98
C9orf3-218ENST00000482056 SPAG11AQ6PDA7 123 aa8.9□□□□□ -0.98
C9orf3-218ENST00000482056 FAM229AH3BQW9 127 aa8.9□□□□□ -0.99
C9orf3-218ENST00000482056 Q6ZSA8 131 aa8.89□□□□□ -0.99
C9orf3-218ENST00000482056 ALMS1Q8TCU4 4167 aa8.88□□□□□ -0.99
C9orf3-218ENST00000482056 A6NED7 52 aa8.88□□□□□ -0.99
C9orf3-218ENST00000482056 KRTAP13-2Q52LG2 175 aa8.87□□□□□ -0.99
C9orf3-218ENST00000482056 ACYP2P14621 99 aa8.86□□□□□ -0.99
C9orf3-218ENST00000482056 DNAH11Q96DT5 4516 aa8.86□□□□□ -0.99
C9orf3-218ENST00000482056 KRTAP10-1P60331 282 aa8.86□□□□□ -0.99
C9orf3-218ENST00000482056 DNAH5Q8TE73 4624 aa8.85□□□□□ -0.99
C9orf3-218ENST00000482056 PMAIP1Q13794 54 aa8.81□□□□□ -1
C9orf3-218ENST00000482056 C4orf48Q5BLP8 95 aa8.79□□□□□ -1
C9orf3-218ENST00000482056 DMAC1Q96GE9 116 aa8.79□□□□□ -1
C9orf3-218ENST00000482056 A8MU10 97 aa8.79□□□□□ -1
C9orf3-218ENST00000482056 IGKV2-30P06310 120 aa8.79□□□□□ -1
C9orf3-218ENST00000482056 ATP11AUNQ6ZP68 121 aa8.79□□□□□ -1
C9orf3-218ENST00000482056 CDC42SE1Q9NRR8 79 aa8.79□□□□□ -1
C9orf3-218ENST00000482056 KRTAP1-4P0C5Y4 121 aa8.77□□□□□ -1
C9orf3-218ENST00000482056 LCA10Q71F78 164 aa8.77□□□□□ -1
C9orf3-218ENST00000482056 RETNLBQ9BQ08 111 aa8.77□□□□□ -1.01
C9orf3-218ENST00000482056 PRR26Q8N8Z3 221 aa8.76□□□□□ -1.01
C9orf3-218ENST00000482056 KRTAP16-1A8MUX0 517 aa8.75□□□□□ -1.01
C9orf3-218ENST00000482056 SPTSSBQ8NFR3 76 aa8.75□□□□□ -1.01
C9orf3-218ENST00000482056 PLA2G1BP04054 148 aaKnown RBP8.73□□□□□ -1.01
C9orf3-218ENST00000482056 TYMSOSQ8TAI1 123 aa8.73□□□□□ -1.01
C9orf3-218ENST00000482056 SPINK1P00995 79 aa8.72□□□□□ -1.01
C9orf3-218ENST00000482056 PKD1P98161 4303 aa8.72□□□□□ -1.01
C9orf3-218ENST00000482056 DNHD1Q96M86 4753 aa8.72□□□□□ -1.01
C9orf3-218ENST00000482056 LRP1BQ9NZR2 4599 aa8.7□□□□□ -1.02
C9orf3-218ENST00000482056 SPINK7P58062 85 aa8.68□□□□□ -1.02
C9orf3-218ENST00000482056 FAT2Q9NYQ8 4349 aa8.67□□□□□ -1.02
C9orf3-218ENST00000482056 IGKV2D-30A0A075B6S6 120 aa8.66□□□□□ -1.02
C9orf3-218ENST00000482056 KRTAP21-3Q3LHN1 58 aa8.64□□□□□ -1.03
C9orf3-218ENST00000482056 RPS29P62273 56 aaKnown RBP8.63□□□□□ -1.03
C9orf3-218ENST00000482056 A0A1B0GU69 56 aa8.61□□□□□ -1.03
C9orf3-218ENST00000482056 KTN1-AS1Q86SY8 53 aa8.61□□□□□ -1.03
C9orf3-218ENST00000482056 LINC00304Q8N9R0 145 aa8.61□□□□□ -1.03
C9orf3-218ENST00000482056 VPS13BQ7Z7G8 4022 aa8.6□□□□□ -1.03
C9orf3-218ENST00000482056 A6NN06 94 aa8.6□□□□□ -1.03
C9orf3-218ENST00000482056 C7orf65Q6ZTY9 151 aa8.6□□□□□ -1.03
C9orf3-218ENST00000482056 HYDINQ4G0P3 5121 aa8.56□□□□□ -1.04
C9orf3-218ENST00000482056 SEC61GP60059 68 aa8.55□□□□□ -1.04
C9orf3-218ENST00000482056 UQCR11O14957 56 aa8.47□□□□□ -1.05
C9orf3-218ENST00000482056 SPATA8Q6RVD6 105 aa8.46□□□□□ -1.06
C9orf3-218ENST00000482056 SACSQ9NZJ4 4579 aa8.46□□□□□ -1.06
C9orf3-218ENST00000482056 SMR3BP02814 79 aaPredicted RBP8.45□□□□□ -1.06
C9orf3-218ENST00000482056 MIR22HGQ0VDD5 57 aa8.43□□□□□ -1.06
C9orf3-218ENST00000482056 Q8N1X5 172 aa8.42□□□□□ -1.06
C9orf3-218ENST00000482056 A8MUU9 505 aa8.41□□□□□ -1.06
C9orf3-218ENST00000482056 C20orf166-AS1Q96NR2 134 aa8.41□□□□□ -1.06
C9orf3-218ENST00000482056 PKHD1P08F94 4074 aa8.39□□□□□ -1.07
C9orf3-218ENST00000482056 C9orf92A6NGG3 77 aa8.39□□□□□ -1.07
C9orf3-218ENST00000482056 A0A1B0GVY2 172 aa8.37□□□□□ -1.07
C9orf3-218ENST00000482056 RBM12B-AS1Q9P1G2 102 aa8.35□□□□□ -1.07
C9orf3-218ENST00000482056 DYNC1H1Q14204 4646 aaKnown RBP8.35□□□□□ -1.07
C9orf3-218ENST00000482056 KRTAP10-4P60372 401 aaPredicted RBP8.33□□□□□ -1.08
C9orf3-218ENST00000482056 PKHD1L1Q86WI1 4243 aa8.31□□□□□ -1.08
C9orf3-218ENST00000482056 APOBP04114 4563 aaKnown RBP8.28□□□□□ -1.08
C9orf3-218ENST00000482056 FAT1Q14517 4588 aa8.22□□□□□ -1.09
C9orf3-218ENST00000482056 KRTAP3-1Q9BYR8 98 aa8.2□□□□□ -1.1
C9orf3-218ENST00000482056 COX6B2Q6YFQ2 88 aa8.16□□□□□ -1.1
C9orf3-218ENST00000482056 PRAC1Q96KF2 57 aa8.15□□□□□ -1.1
C9orf3-218ENST00000482056 A0A1B0GU33 70 aa8.13□□□□□ -1.11
C9orf3-218ENST00000482056 FLG2Q5D862 2391 aaPredicted RBP8.12□□□□□ -1.11
C9orf3-218ENST00000482056 ADM2Q7Z4H4 148 aa8.11□□□□□ -1.11
C9orf3-218ENST00000482056 H0YAA0 97 aa8.1□□□□□ -1.11
C9orf3-218ENST00000482056 H1FX-AS1Q4G0G2 97 aa8.1□□□□□ -1.11
C9orf3-218ENST00000482056 KRTAP10-8P60410 259 aa8.07□□□□□ -1.12
C9orf3-218ENST00000482056 RYR2Q92736 4967 aa8.06□□□□□ -1.12
C9orf3-218ENST00000482056 Q5VSD8 79 aa8.02□□□□□ -1.12
C9orf3-218ENST00000482056 RPL37P61927 97 aaKnown RBP8.02□□□□□ -1.13
C9orf3-218ENST00000482056 FAT3Q8TDW7 4589 aa8.01□□□□□ -1.13
C9orf3-218ENST00000482056 TNXBP22105 4242 aa7.97□□□□□ -1.13
C9orf3-218ENST00000482056 K7ERS5 55 aa7.97□□□□□ -1.13
C9orf3-218ENST00000482056 LINC01554Q52M75 96 aa7.97□□□□□ -1.13
C9orf3-218ENST00000482056 CSAG1Q6PB30 78 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms