RNA–Protein interactions for RNA: ENST00000479099.2

RC3H1-204, Transcript of ring finger and CCCH-type domains 1, humanhuman

TSL 3

Gene RC3H1, Length 481 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1-204ENST00000479099 MAP1BP46821 2468 aaKnown RBP1.23□□□□□ -2.21
RC3H1-204ENST00000479099 PKD1L1Q8TDX9 2849 aa1.23□□□□□ -2.21
RC3H1-204ENST00000479099 COL6A5A8TX70 2615 aa1.22□□□□□ -2.21
RC3H1-204ENST00000479099 UNC79Q9P2D8 2635 aa1.22□□□□□ -2.21
RC3H1-204ENST00000479099 HIVEP3Q5T1R4 2406 aa1.21□□□□□ -2.22
RC3H1-204ENST00000479099 PDZD2O15018 2839 aa1.21□□□□□ -2.22
RC3H1-204ENST00000479099 VPS13BQ7Z7G8 4022 aa1.2□□□□□ -2.22
RC3H1-204ENST00000479099 TNP1P09430 55 aa1.2□□□□□ -2.22
RC3H1-204ENST00000479099 CHD7Q9P2D1 2997 aa1.2□□□□□ -2.22
RC3H1-204ENST00000479099 PTPN13Q12923 2485 aa1.2□□□□□ -2.22
RC3H1-204ENST00000479099 HUWE1Q7Z6Z7 4374 aaKnown RBP1.19□□□□□ -2.22
RC3H1-204ENST00000479099 ZFYVE26Q68DK2 2539 aa1.19□□□□□ -2.22
RC3H1-204ENST00000479099 SACSQ9NZJ4 4579 aa1.18□□□□□ -2.22
RC3H1-204ENST00000479099 KMT2AQ03164 3969 aa1.18□□□□□ -2.22
RC3H1-204ENST00000479099 SETD2Q9BYW2 2564 aaPredicted RBP1.17□□□□□ -2.22
RC3H1-204ENST00000479099 H3BNG1 76 aa1.17□□□□□ -2.22
RC3H1-204ENST00000479099 H3BSH0 61 aa1.17□□□□□ -2.22
RC3H1-204ENST00000479099 DNAH11Q96DT5 4516 aa1.17□□□□□ -2.22
RC3H1-204ENST00000479099 ACANP16112 2415 aa1.17□□□□□ -2.22
RC3H1-204ENST00000479099 DMBT1Q9UGM3 2413 aaPredicted RBP1.16□□□□□ -2.22
RC3H1-204ENST00000479099 NF1P21359 2839 aa1.14□□□□□ -2.23
RC3H1-204ENST00000479099 SETXQ7Z333 2677 aaKnown RBP1.14□□□□□ -2.23
RC3H1-204ENST00000479099 TENM1Q9UKZ4 2725 aa1.13□□□□□ -2.23
RC3H1-204ENST00000479099 FLNCQ14315 2725 aa1.12□□□□□ -2.23
RC3H1-204ENST00000479099 DEFB104AQ8WTQ1 72 aa1.12□□□□□ -2.23
RC3H1-204ENST00000479099 ACACAQ13085 2346 aa1.12□□□□□ -2.23
RC3H1-204ENST00000479099 GCN1Q92616 2671 aaKnown RBP1.12□□□□□ -2.23
RC3H1-204ENST00000479099 KRTAP21-1Q3LI58 79 aa1.11□□□□□ -2.23
RC3H1-204ENST00000479099 TENM2Q9NT68 2774 aa1.1□□□□□ -2.23
RC3H1-204ENST00000479099 APC2O95996 2303 aa1.1□□□□□ -2.23
RC3H1-204ENST00000479099 VPS13DQ5THJ4 4388 aa1.1□□□□□ -2.23
RC3H1-204ENST00000479099 ZZEF1O43149 2961 aa1.09□□□□□ -2.23
RC3H1-204ENST00000479099 K7EIM0 57 aa1.09□□□□□ -2.23
RC3H1-204ENST00000479099 SPRR2DP22532 72 aa1.09□□□□□ -2.23
RC3H1-204ENST00000479099 MYCBP2O75592 4640 aa1.09□□□□□ -2.24
RC3H1-204ENST00000479099 CCDC168Q8NDH2 2452 aa1.08□□□□□ -2.24
RC3H1-204ENST00000479099 STAB1Q9NY15 2570 aa1.07□□□□□ -2.24
RC3H1-204ENST00000479099 USP24Q9UPU5 2620 aa1.06□□□□□ -2.24
RC3H1-204ENST00000479099 MTORP42345 2549 aa1.05□□□□□ -2.24
RC3H1-204ENST00000479099 DEFB110Q30KQ9 67 aa1.05□□□□□ -2.24
RC3H1-204ENST00000479099 DNAH3Q8TD57 4116 aa1.05□□□□□ -2.24
RC3H1-204ENST00000479099 RIF1Q5UIP0 2472 aaKnown RBP1.05□□□□□ -2.24
RC3H1-204ENST00000479099 PKD1P98161 4303 aa1.04□□□□□ -2.24
RC3H1-204ENST00000479099 TACC2O95359 2948 aa1.03□□□□□ -2.24
RC3H1-204ENST00000479099 EPG5Q9HCE0 2579 aa1.02□□□□□ -2.25
RC3H1-204ENST00000479099 NSD1Q96L73 2696 aaPredicted RBP1.02□□□□□ -2.25
RC3H1-204ENST00000479099 SPRR2BP35325 72 aa1.02□□□□□ -2.25
RC3H1-204ENST00000479099 SYNE1Q8NF91 8797 aaKnown RBP1.02□□□□□ -2.25
RC3H1-204ENST00000479099 SPTBN4Q9H254 2564 aa1.02□□□□□ -2.25
RC3H1-204ENST00000479099 SPENQ96T58 3664 aaKnown RBP1.02□□□□□ -2.25
RC3H1-204ENST00000479099 FLNBO75369 2602 aaKnown RBP1.02□□□□□ -2.25
RC3H1-204ENST00000479099 LRP1Q07954 4544 aaKnown RBP1.01□□□□□ -2.25
RC3H1-204ENST00000479099 DMXL1Q9Y485 3027 aa1.01□□□□□ -2.25
RC3H1-204ENST00000479099 SPART-AS1P0CW21 52 aa1.01□□□□□ -2.25
RC3H1-204ENST00000479099 TMEM167AQ8TBQ9 72 aa1.01□□□□□ -2.25
RC3H1-204ENST00000479099 CUBNO60494 3623 aa1□□□□□ -2.25
RC3H1-204ENST00000479099 LRRK2Q5S007 2527 aa0.99□□□□□ -2.25
RC3H1-204ENST00000479099 LPAP08519 4548 aa0.99□□□□□ -2.25
RC3H1-204ENST00000479099 DCHS2Q6V1P9 2916 aa0.99□□□□□ -2.25
RC3H1-204ENST00000479099 ANK3Q12955 4377 aaKnown RBP0.99□□□□□ -2.25
RC3H1-204ENST00000479099 DYNC2H1Q8NCM8 4307 aaKnown RBP0.98□□□□□ -2.25
RC3H1-204ENST00000479099 FAM186AA6NE01 2351 aa0.98□□□□□ -2.25
RC3H1-204ENST00000479099 CRYBG3Q68DQ2 2970 aa0.98□□□□□ -2.25
RC3H1-204ENST00000479099 PKHD1L1Q86WI1 4243 aa0.98□□□□□ -2.25
RC3H1-204ENST00000479099 FRYQ5TBA9 3013 aa0.98□□□□□ -2.25
RC3H1-204ENST00000479099 COL7A1Q02388 2944 aa0.98□□□□□ -2.25
RC3H1-204ENST00000479099 COL12A1Q99715 3063 aa0.97□□□□□ -2.25
RC3H1-204ENST00000479099 DNAH2Q9P225 4427 aa0.97□□□□□ -2.25
RC3H1-204ENST00000479099 HSPG2P98160 4391 aa0.97□□□□□ -2.25
RC3H1-204ENST00000479099 HECTD4Q9Y4D8 3996 aa0.96□□□□□ -2.26
RC3H1-204ENST00000479099 KRTAP8-1Q8IUC2 63 aa0.96□□□□□ -2.26
RC3H1-204ENST00000479099 HRNRQ86YZ3 2850 aaPredicted RBP0.96□□□□□ -2.26
RC3H1-204ENST00000479099 SONP18583 2426 aaKnown RBP0.96□□□□□ -2.26
RC3H1-204ENST00000479099 AHNAK2Q8IVF2 5795 aa0.95□□□□□ -2.26
RC3H1-204ENST00000479099 USP9YO00507 2555 aaPredicted RBP0.95□□□□□ -2.26
RC3H1-204ENST00000479099 ANKHD1Q8IWZ3 2542 aaKnown RBP0.95□□□□□ -2.26
RC3H1-204ENST00000479099 NCOR2Q9Y618 2525 aa0.95□□□□□ -2.26
RC3H1-204ENST00000479099 ANKRD11Q6UB99 2663 aaPredicted RBP0.95□□□□□ -2.26
RC3H1-204ENST00000479099 CACNA1AO00555 2505 aa0.94□□□□□ -2.26
RC3H1-204ENST00000479099 NBEAL2Q6ZNJ1 2754 aa0.94□□□□□ -2.26
RC3H1-204ENST00000479099 NBPF19A0A087WUL8 3843 aa0.94□□□□□ -2.26
RC3H1-204ENST00000479099 RANBP2P49792 3224 aaKnown RBP0.93□□□□□ -2.26
RC3H1-204ENST00000479099 ACACBO00763 2458 aa0.92□□□□□ -2.26
RC3H1-204ENST00000479099 ITPR3Q14573 2671 aa0.91□□□□□ -2.26
RC3H1-204ENST00000479099 KRTAP5-10Q6L8G5 202 aa0.91□□□□□ -2.26
RC3H1-204ENST00000479099 ZFHX4Q86UP3 3567 aa0.91□□□□□ -2.26
RC3H1-204ENST00000479099 UTP20O75691 2785 aaKnown RBP0.91□□□□□ -2.26
RC3H1-204ENST00000479099 FLGP20930 4061 aaPredicted RBP0.9□□□□□ -2.26
RC3H1-204ENST00000479099 DNAH8Q96JB1 4490 aa0.9□□□□□ -2.27
RC3H1-204ENST00000479099 MT1AP04731 61 aa0.9□□□□□ -2.27
RC3H1-204ENST00000479099 DNAH7Q8WXX0 4024 aa0.89□□□□□ -2.27
RC3H1-204ENST00000479099 SPRR2AP35326 72 aa0.89□□□□□ -2.27
RC3H1-204ENST00000479099 DNAH9Q9NYC9 4486 aa0.89□□□□□ -2.27
RC3H1-204ENST00000479099 CELSR3Q9NYQ7 3312 aa0.89□□□□□ -2.27
RC3H1-204ENST00000479099 KRTAP6-2Q3LI66 62 aa0.88□□□□□ -2.27
RC3H1-204ENST00000479099 HIVEP1P15822 2718 aa0.88□□□□□ -2.27
RC3H1-204ENST00000479099 SPG11Q96JI7 2443 aa0.88□□□□□ -2.27
RC3H1-204ENST00000479099 NBEAQ8NFP9 2946 aa0.87□□□□□ -2.27
RC3H1-204ENST00000479099 MUC16Q8WXI7 14507 aa0.87□□□□□ -2.27
RC3H1-204ENST00000479099 DNAH6Q9C0G6 4158 aa0.86□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms