RNA–Protein interactions for RNA: ENST00000479099.2

RC3H1-204, Transcript of ring finger and CCCH-type domains 1, humanhuman

TSL 3

Gene RC3H1, Length 481 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1-204ENST00000479099 AEBP2Q6ZN18 517 aaPredicted RBP23.73■■□□□ 1.39
RC3H1-204ENST00000479099 CHIC1Q5VXU3 224 aa22.73■■□□□ 1.23
RC3H1-204ENST00000479099 SENP3Q9H4L4 574 aaPredicted RBP20.27■□□□□ 0.84
RC3H1-204ENST00000479099 PHF23Q9BUL5 403 aaPredicted RBP20■□□□□ 0.79
RC3H1-204ENST00000479099 FOXD1Q16676 465 aa18.84■□□□□ 0.61
RC3H1-204ENST00000479099 PLPPR3Q6T4P5 718 aa18.25■□□□□ 0.51
RC3H1-204ENST00000479099 PPP6R1Q9UPN7 881 aa17.72■□□□□ 0.43
RC3H1-204ENST00000479099 ADRA2BP18089 450 aa17.68■□□□□ 0.42
RC3H1-204ENST00000479099 PIAS4Q8N2W9 510 aaPredicted RBP17.66■□□□□ 0.42
RC3H1-204ENST00000479099 MSH5O43196 834 aa17.61■□□□□ 0.41
RC3H1-204ENST00000479099 POTEDQ86YR6 584 aa16.87■□□□□ 0.29
RC3H1-204ENST00000479099 SCAF1Q9H7N4 1312 aaKnown RBP16.23■□□□□ 0.19
RC3H1-204ENST00000479099 MAPK8IP2Q13387 824 aaPredicted RBP16.18■□□□□ 0.18
RC3H1-204ENST00000479099 DMRT2Q9Y5R5 561 aa16.09■□□□□ 0.17
RC3H1-204ENST00000479099 PPP4R3CPQ6ZMV5 832 aa16.01■□□□□ 0.15
RC3H1-204ENST00000479099 CNKSR2Q8WXI2 1034 aa15.69■□□□□ 0.1
RC3H1-204ENST00000479099 HOXD11P31277 338 aaPredicted RBP15.57■□□□□ 0.08
RC3H1-204ENST00000479099 RNF216Q9NWF9 866 aaPredicted RBP15.5■□□□□ 0.07
RC3H1-204ENST00000479099 NCBP3Q53F19 620 aaKnown RBP15.47■□□□□ 0.07
RC3H1-204ENST00000479099 DCAF8L1A6NGE4 600 aa15.4■□□□□ 0.06
RC3H1-204ENST00000479099 NPM3O75607 178 aaKnown RBP15.21■□□□□ 0.03
RC3H1-204ENST00000479099 KCNA4P22459 653 aa15.05■□□□□ -0
RC3H1-204ENST00000479099 DNAJC5BQ9UF47 199 aa15.03■□□□□ -0
RC3H1-204ENST00000479099 RNF39Q9H2S5 420 aa15.02■□□□□ -0
RC3H1-204ENST00000479099 CACNB1Q02641 598 aaPredicted RBP14.99□□□□□ -0.01
RC3H1-204ENST00000479099 C1QBPQ07021 282 aaKnown RBP14.82□□□□□ -0.04
RC3H1-204ENST00000479099 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.82□□□□□ -0.04
RC3H1-204ENST00000479099 U3KPZ7 1027 aaPredicted RBP14.52□□□□□ -0.09
RC3H1-204ENST00000479099 SLC4A2P04920 1241 aa14.47□□□□□ -0.09
RC3H1-204ENST00000479099 SLC4A1APQ9BWU0 796 aaKnown RBP14.26□□□□□ -0.13
RC3H1-204ENST00000479099 SPINK5Q9NQ38 1064 aaPredicted RBP14.25□□□□□ -0.13
RC3H1-204ENST00000479099 CAPN15O75808 1086 aa14.24□□□□□ -0.13
RC3H1-204ENST00000479099 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.21□□□□□ -0.13
RC3H1-204ENST00000479099 HNRNPUL2Q1KMD3 747 aaKnown RBP14.21□□□□□ -0.13
RC3H1-204ENST00000479099 APLP2Q06481 763 aa14.2□□□□□ -0.14
RC3H1-204ENST00000479099 SAMD1Q6SPF0 538 aaPredicted RBP14.13□□□□□ -0.15
RC3H1-204ENST00000479099 DSG3P32926 999 aa14.11□□□□□ -0.15
RC3H1-204ENST00000479099 MYCNP04198 464 aaPredicted RBP14.09□□□□□ -0.15
RC3H1-204ENST00000479099 ZNF219Q9P2Y4 722 aaPredicted RBP14.05□□□□□ -0.16
RC3H1-204ENST00000479099 TRHP20396 242 aaPredicted RBP14.04□□□□□ -0.16
RC3H1-204ENST00000479099 FOXD4L1Q9NU39 408 aa14.02□□□□□ -0.17
RC3H1-204ENST00000479099 ABCB7O75027 752 aa13.9□□□□□ -0.18
RC3H1-204ENST00000479099 ZBTB22O15209 634 aa13.82□□□□□ -0.2
RC3H1-204ENST00000479099 POLA2Q14181 598 aa13.7□□□□□ -0.22
RC3H1-204ENST00000479099 ATF5Q9Y2D1 282 aaPredicted RBP13.7□□□□□ -0.22
RC3H1-204ENST00000479099 ATXN8OSP0DMR3 200 aa13.6□□□□□ -0.23
RC3H1-204ENST00000479099 RBM42Q9BTD8 480 aaKnown RBP13.5□□□□□ -0.25
RC3H1-204ENST00000479099 ZBTB12Q9Y330 459 aaPredicted RBP13.49□□□□□ -0.25
RC3H1-204ENST00000479099 CSRNP3Q8WYN3 585 aa13.35□□□□□ -0.27
RC3H1-204ENST00000479099 POTEHQ6S545 545 aa13.26□□□□□ -0.29
RC3H1-204ENST00000479099 EHMT2Q96KQ7 1210 aa13.26□□□□□ -0.29
RC3H1-204ENST00000479099 OSCARQ8IYS5 282 aa13.25□□□□□ -0.29
RC3H1-204ENST00000479099 FBLN2P98095 1184 aa13.21□□□□□ -0.29
RC3H1-204ENST00000479099 AKT1S1Q96B36 256 aa13.21□□□□□ -0.29
RC3H1-204ENST00000479099 SLC24A1O60721 1099 aa13.15□□□□□ -0.3
RC3H1-204ENST00000479099 CHRDL2Q6WN34 429 aa13.11□□□□□ -0.31
RC3H1-204ENST00000479099 MKRN4PQ13434 485 aaPredicted RBP13.09□□□□□ -0.31
RC3H1-204ENST00000479099 REM2Q8IYK8 340 aaPredicted RBP13.07□□□□□ -0.32
RC3H1-204ENST00000479099 SPDYE2BA6NHP3 402 aa13.06□□□□□ -0.32
RC3H1-204ENST00000479099 SPDYE6P0CI01 402 aa13.06□□□□□ -0.32
RC3H1-204ENST00000479099 SPDYE2Q495Y8 402 aa13.06□□□□□ -0.32
RC3H1-204ENST00000479099 PITPNM1O00562 1244 aa12.92□□□□□ -0.34
RC3H1-204ENST00000479099 ZNF692Q9BU19 519 aaPredicted RBP12.92□□□□□ -0.34
RC3H1-204ENST00000479099 SSUH2Q9Y2M2 353 aa12.9□□□□□ -0.34
RC3H1-204ENST00000479099 PIP4P2Q8N4L2 257 aa12.83□□□□□ -0.36
RC3H1-204ENST00000479099 SPDYE1Q8NFV5 336 aaPredicted RBP12.8□□□□□ -0.36
RC3H1-204ENST00000479099 FXR2P51116 673 aaKnown RBP eCLIP12.79□□□□□ -0.36
RC3H1-204ENST00000479099 CLEC11AQ9Y240 323 aa12.74□□□□□ -0.37
RC3H1-204ENST00000479099 PABPN1Q86U42 306 aaKnown RBP eCLIP12.73□□□□□ -0.37
RC3H1-204ENST00000479099 PRKAR2AP13861 404 aaKnown RBP12.59□□□□□ -0.39
RC3H1-204ENST00000479099 SPDYE4A6NLX3 237 aa12.58□□□□□ -0.4
RC3H1-204ENST00000479099 PRR29P0C7W0 189 aa12.57□□□□□ -0.4
RC3H1-204ENST00000479099 HAX1O00165 279 aa12.55□□□□□ -0.4
RC3H1-204ENST00000479099 SP7Q8TDD2 431 aaPredicted RBP12.52□□□□□ -0.41
RC3H1-204ENST00000479099 CHADLQ6NUI6 762 aa12.46□□□□□ -0.41
RC3H1-204ENST00000479099 STAG3Q9UJ98 1225 aa12.45□□□□□ -0.42
RC3H1-204ENST00000479099 EVX2Q03828 476 aa12.38□□□□□ -0.43
RC3H1-204ENST00000479099 C19orf67A6NJJ6 358 aa12.37□□□□□ -0.43
RC3H1-204ENST00000479099 FARP1Q9Y4F1 1045 aaPredicted RBP12.32□□□□□ -0.44
RC3H1-204ENST00000479099 PROM2Q8N271 834 aa12.31□□□□□ -0.44
RC3H1-204ENST00000479099 CREBZFQ9NS37 354 aa12.28□□□□□ -0.44
RC3H1-204ENST00000479099 CD44P16070 742 aaKnown RBP12.21□□□□□ -0.45
RC3H1-204ENST00000479099 RTN4Q9NQC3 1192 aaKnown RBP12.2□□□□□ -0.46
RC3H1-204ENST00000479099 AMER1Q5JTC6 1135 aaPredicted RBP12.18□□□□□ -0.46
RC3H1-204ENST00000479099 GABBR2O75899 941 aa12.14□□□□□ -0.47
RC3H1-204ENST00000479099 FKBP8Q14318 412 aa12.11□□□□□ -0.47
RC3H1-204ENST00000479099 NPM1P06748 294 aaKnown RBP eCLIP12.1□□□□□ -0.47
RC3H1-204ENST00000479099 MNX1P50219 401 aaPredicted RBP12.09□□□□□ -0.47
RC3H1-204ENST00000479099 CLCN6P51797 869 aa12.07□□□□□ -0.48
RC3H1-204ENST00000479099 ZRANB1Q9UGI0 708 aa12.06□□□□□ -0.48
RC3H1-204ENST00000479099 ZNF579Q8NAF0 562 aaKnown RBP12.04□□□□□ -0.48
RC3H1-204ENST00000479099 PAK3O75914 559 aaPredicted RBP12.02□□□□□ -0.49
RC3H1-204ENST00000479099 PLEKHG5O94827 1062 aa11.99□□□□□ -0.49
RC3H1-204ENST00000479099 MIER1Q8N108 512 aa11.98□□□□□ -0.49
RC3H1-204ENST00000479099 PLCD3Q8N3E9 789 aa11.91□□□□□ -0.5
RC3H1-204ENST00000479099 PHF12Q96QT6 1004 aa11.89□□□□□ -0.51
RC3H1-204ENST00000479099 POTEIP0CG38 1075 aa11.87□□□□□ -0.51
RC3H1-204ENST00000479099 GALR2O43603 387 aaPredicted RBP11.86□□□□□ -0.51
RC3H1-204ENST00000479099 DCBLD2Q96PD2 775 aa11.86□□□□□ -0.51
RC3H1-204ENST00000479099 FBXO3Q9UK99 471 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms