RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-215ENST00000478473 A0A1B0GW54 56 aa11.92□□□□□ -0.5
C9orf3-215ENST00000478473 JMJD7-PLA2G4BH0Y9G9 81 aa11.92□□□□□ -0.5
C9orf3-215ENST00000478473 J3KT08 172 aa11.91□□□□□ -0.5
C9orf3-215ENST00000478473 CRCT1Q9UGL9 99 aa11.9□□□□□ -0.5
C9orf3-215ENST00000478473 LOC110117498A0A087WWA1 95 aa11.89□□□□□ -0.51
C9orf3-215ENST00000478473 NAA38Q9BRA0 125 aaKnown RBP11.89□□□□□ -0.51
C9orf3-215ENST00000478473 PDE6GP18545 87 aa11.86□□□□□ -0.51
C9orf3-215ENST00000478473 MPLKIPQ8TAP9 179 aa11.86□□□□□ -0.51
C9orf3-215ENST00000478473 LYRM7Q5U5X0 104 aa11.83□□□□□ -0.52
C9orf3-215ENST00000478473 FSIP2Q5CZC0 6907 aa11.82□□□□□ -0.52
C9orf3-215ENST00000478473 TSTD3H0UI37 97 aa11.81□□□□□ -0.52
C9orf3-215ENST00000478473 HRES1P13985 223 aa11.81□□□□□ -0.52
C9orf3-215ENST00000478473 Q8N9P0 234 aaPredicted RBP11.77□□□□□ -0.53
C9orf3-215ENST00000478473 NDUFB1O75438 58 aa11.76□□□□□ -0.53
C9orf3-215ENST00000478473 KRTAP9-8Q9BYQ0 159 aa11.76□□□□□ -0.53
C9orf3-215ENST00000478473 A8MWP4 228 aa11.75□□□□□ -0.53
C9orf3-215ENST00000478473 ZCCHC13Q8WW36 166 aaKnown RBP11.74□□□□□ -0.53
C9orf3-215ENST00000478473 C14orf132Q9NPU4 83 aa11.74□□□□□ -0.53
C9orf3-215ENST00000478473 RBM12B-AS1Q9P1G2 102 aa11.72□□□□□ -0.53
C9orf3-215ENST00000478473 LOC105371267A0A1B0GV96 52 aa11.7□□□□□ -0.54
C9orf3-215ENST00000478473 C8orf17Q9NRJ1 99 aa11.7□□□□□ -0.54
C9orf3-215ENST00000478473 IGKV3D-7A0A0C4DH55 119 aa11.69□□□□□ -0.54
C9orf3-215ENST00000478473 C9orf118A6NHY6 69 aa11.69□□□□□ -0.54
C9orf3-215ENST00000478473 BATFQ16520 125 aa11.67□□□□□ -0.54
C9orf3-215ENST00000478473 FAM236DA0A1B0GTK5 79 aa11.66□□□□□ -0.54
C9orf3-215ENST00000478473 H3BT86 120 aa11.66□□□□□ -0.54
C9orf3-215ENST00000478473 FAM236CP0DP71 79 aa11.66□□□□□ -0.54
C9orf3-215ENST00000478473 TAX1BP3O14907 124 aa11.65□□□□□ -0.54
C9orf3-215ENST00000478473 PRR15Q8IV56 129 aa11.64□□□□□ -0.55
C9orf3-215ENST00000478473 SPINK7P58062 85 aa11.63□□□□□ -0.55
C9orf3-215ENST00000478473 A0A1W2PPM0 123 aa11.62□□□□□ -0.55
C9orf3-215ENST00000478473 NREPQ16612 68 aa11.62□□□□□ -0.55
C9orf3-215ENST00000478473 Q6ZVQ6 151 aa11.6□□□□□ -0.55
C9orf3-215ENST00000478473 MTURNQ8N3F0 131 aa11.57□□□□□ -0.56
C9orf3-215ENST00000478473 MMP24-AS1A0A0U1RRL7 71 aa11.54□□□□□ -0.56
C9orf3-215ENST00000478473 MT2AP02795 61 aa11.54□□□□□ -0.56
C9orf3-215ENST00000478473 TMEM254Q8TBM7 123 aa11.53□□□□□ -0.56
C9orf3-215ENST00000478473 MRPL34Q9BQ48 92 aaKnown RBP11.51□□□□□ -0.57
C9orf3-215ENST00000478473 K7EQZ3 153 aa11.47□□□□□ -0.57
C9orf3-215ENST00000478473 hDV103S1A0JD37 113 aa11.44□□□□□ -0.58
C9orf3-215ENST00000478473 MT1FP04733 61 aa11.44□□□□□ -0.58
C9orf3-215ENST00000478473 SPCS1Q9Y6A9 102 aa11.43□□□□□ -0.58
C9orf3-215ENST00000478473 SMCPP49901 116 aaPredicted RBP11.42□□□□□ -0.58
C9orf3-215ENST00000478473 WFDC13Q8IUB5 93 aa11.42□□□□□ -0.58
C9orf3-215ENST00000478473 BPY2O14599 106 aa11.41□□□□□ -0.58
C9orf3-215ENST00000478473 KRTAP9-3Q9BYQ3 159 aa11.39□□□□□ -0.59
C9orf3-215ENST00000478473 COL5A1-AS1Q5SY13 56 aa11.34□□□□□ -0.59
C9orf3-215ENST00000478473 PRO0461Q9UI25 63 aa11.34□□□□□ -0.59
C9orf3-215ENST00000478473 KRTAP10-10P60014 251 aa11.33□□□□□ -0.6
C9orf3-215ENST00000478473 USH2AO75445 5202 aa11.33□□□□□ -0.6
C9orf3-215ENST00000478473 LCE2BO14633 110 aa11.3□□□□□ -0.6
C9orf3-215ENST00000478473 NDUFS5O43920 106 aa11.29□□□□□ -0.6
C9orf3-215ENST00000478473 Q5W150 140 aa11.28□□□□□ -0.6
C9orf3-215ENST00000478473 K7EP34 96 aa11.26□□□□□ -0.61
C9orf3-215ENST00000478473 Q8N9L7 120 aa11.26□□□□□ -0.61
C9orf3-215ENST00000478473 SSPOA2VEC9 5147 aa11.26□□□□□ -0.61
C9orf3-215ENST00000478473 CASC2Q6XLA1 102 aa11.25□□□□□ -0.61
C9orf3-215ENST00000478473 LINC00846Q9NV44 126 aa11.24□□□□□ -0.61
C9orf3-215ENST00000478473 H1FX-AS1Q4G0G2 97 aa11.23□□□□□ -0.61
C9orf3-215ENST00000478473 C7orf65Q6ZTY9 151 aa11.22□□□□□ -0.61
C9orf3-215ENST00000478473 UBL5Q9BZL1 73 aa11.2□□□□□ -0.62
C9orf3-215ENST00000478473 HCG22E2RYF7 251 aa11.18□□□□□ -0.62
C9orf3-215ENST00000478473 CXCL6P80162 114 aa11.18□□□□□ -0.62
C9orf3-215ENST00000478473 IGKV2D-30A0A075B6S6 120 aa11.17□□□□□ -0.62
C9orf3-215ENST00000478473 IGKV2-30P06310 120 aa11.17□□□□□ -0.62
C9orf3-215ENST00000478473 GTF2H5Q6ZYL4 71 aa11.1□□□□□ -0.63
C9orf3-215ENST00000478473 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.09□□□□□ -0.63
C9orf3-215ENST00000478473 KRTAP19-1Q8IUB9 90 aa11.09□□□□□ -0.63
C9orf3-215ENST00000478473 F8W1H4 67 aa11.08□□□□□ -0.64
C9orf3-215ENST00000478473 C4orf26Q17RF5 130 aa11.02□□□□□ -0.65
C9orf3-215ENST00000478473 FCGBPQ9Y6R7 5405 aaPredicted RBP11.01□□□□□ -0.65
C9orf3-215ENST00000478473 ETDBQ3ZM63 59 aa11□□□□□ -0.65
C9orf3-215ENST00000478473 TP53AIP1Q9HCN2 124 aa10.97□□□□□ -0.65
C9orf3-215ENST00000478473 KRTAP19-6Q3LI70 58 aa10.96□□□□□ -0.65
C9orf3-215ENST00000478473 KRTAP9-7A8MTY7 169 aa10.94□□□□□ -0.66
C9orf3-215ENST00000478473 KRTAP3-1Q9BYR8 98 aa10.94□□□□□ -0.66
C9orf3-215ENST00000478473 PCP4L1A6NKN8 68 aa10.91□□□□□ -0.66
C9orf3-215ENST00000478473 ACYP1P07311 99 aa10.82□□□□□ -0.68
C9orf3-215ENST00000478473 C1orf64Q8NEQ6 169 aa10.82□□□□□ -0.68
C9orf3-215ENST00000478473 FAM240AA0A1B0GVK7 77 aa10.78□□□□□ -0.68
C9orf3-215ENST00000478473 S4R3F8 94 aa10.78□□□□□ -0.68
C9orf3-215ENST00000478473 C5orf47Q569G3 176 aa10.77□□□□□ -0.69
C9orf3-215ENST00000478473 CYP4F30PQ9H0H9 118 aa10.75□□□□□ -0.69
C9orf3-215ENST00000478473 CSAG1Q6PB30 78 aa10.74□□□□□ -0.69
C9orf3-215ENST00000478473 LCA10Q71F78 164 aa10.73□□□□□ -0.69
C9orf3-215ENST00000478473 ATP5EP2Q5VTU8 51 aa10.72□□□□□ -0.69
C9orf3-215ENST00000478473 TRAV22A0A0B4J277 110 aa10.69□□□□□ -0.7
C9orf3-215ENST00000478473 LOC101927531A0A1B0GV80 90 aa10.66□□□□□ -0.7
C9orf3-215ENST00000478473 KRTAP3-3Q9BYR6 98 aa10.65□□□□□ -0.7
C9orf3-215ENST00000478473 MACF1Q9UPN3 7388 aaKnown RBP10.64□□□□□ -0.71
C9orf3-215ENST00000478473 SPRR2GQ9BYE4 73 aa10.62□□□□□ -0.71
C9orf3-215ENST00000478473 FAM236AA0A1B0GUQ0 79 aa10.61□□□□□ -0.71
C9orf3-215ENST00000478473 FAM236BA0A1B0GV22 79 aa10.61□□□□□ -0.71
C9orf3-215ENST00000478473 UQCRQO14949 82 aa10.59□□□□□ -0.71
C9orf3-215ENST00000478473 HIST1H4AP62805 103 aaKnown RBP10.56□□□□□ -0.72
C9orf3-215ENST00000478473 KRTAP19-8Q3LI54 63 aa10.56□□□□□ -0.72
C9orf3-215ENST00000478473 ATOX1O00244 68 aa10.54□□□□□ -0.72
C9orf3-215ENST00000478473 MT1BP07438 61 aa10.54□□□□□ -0.72
C9orf3-215ENST00000478473 LINC00643Q86TS7 51 aa10.54□□□□□ -0.72
C9orf3-215ENST00000478473 KLKP1Q107X0 134 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms