RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-208ENST00000478423 KRTAP7-1Q8IUC3 87 aa8.44□□□□□ -1.06
NPHP4-208ENST00000478423 Q5W150 140 aa8.42□□□□□ -1.06
NPHP4-208ENST00000478423 Q1T7F1 81 aa8.41□□□□□ -1.06
NPHP4-208ENST00000478423 A0A087X002 238 aa8.4□□□□□ -1.06
NPHP4-208ENST00000478423 Q5VSD8 79 aa8.4□□□□□ -1.07
NPHP4-208ENST00000478423 A0A0D9SG42 100 aa8.38□□□□□ -1.07
NPHP4-208ENST00000478423 LINC01554Q52M75 96 aa8.38□□□□□ -1.07
NPHP4-208ENST00000478423 FBN1P35555 2871 aaKnown RBP8.37□□□□□ -1.07
NPHP4-208ENST00000478423 OXTP01178 125 aa8.36□□□□□ -1.07
NPHP4-208ENST00000478423 SPINK7P58062 85 aa8.36□□□□□ -1.07
NPHP4-208ENST00000478423 CDC42SE1Q9NRR8 79 aa8.35□□□□□ -1.07
NPHP4-208ENST00000478423 FP248Q71RG6 208 aaPredicted RBP8.35□□□□□ -1.07
NPHP4-208ENST00000478423 KRTAP29-1A8MX34 341 aaPredicted RBP8.33□□□□□ -1.08
NPHP4-208ENST00000478423 PDZD2O15018 2839 aa8.31□□□□□ -1.08
NPHP4-208ENST00000478423 SPINT4Q6UDR6 99 aa8.31□□□□□ -1.08
NPHP4-208ENST00000478423 OTOGQ6ZRI0 2925 aa8.29□□□□□ -1.08
NPHP4-208ENST00000478423 A0A1B0GU33 70 aa8.28□□□□□ -1.08
NPHP4-208ENST00000478423 Q5XG85 94 aa8.28□□□□□ -1.08
NPHP4-208ENST00000478423 LINC01558Q9Y6Z2 57 aa8.28□□□□□ -1.08
NPHP4-208ENST00000478423 TENM2Q9NT68 2774 aa8.28□□□□□ -1.08
NPHP4-208ENST00000478423 NOTCH2NLQ7Z3S9 236 aa8.28□□□□□ -1.08
NPHP4-208ENST00000478423 CRIPTQ9P021 101 aa8.28□□□□□ -1.08
NPHP4-208ENST00000478423 VWFP04275 2813 aa8.27□□□□□ -1.09
NPHP4-208ENST00000478423 Q75L30 129 aa8.25□□□□□ -1.09
NPHP4-208ENST00000478423 TGP01266 2768 aa8.25□□□□□ -1.09
NPHP4-208ENST00000478423 KRTAP13-1Q8IUC0 172 aa8.24□□□□□ -1.09
NPHP4-208ENST00000478423 KTN1-AS1Q86SY8 53 aa8.23□□□□□ -1.09
NPHP4-208ENST00000478423 CSMD2Q7Z408 3487 aa8.21□□□□□ -1.09
NPHP4-208ENST00000478423 CSAG1Q6PB30 78 aa8.21□□□□□ -1.1
NPHP4-208ENST00000478423 Q5VV11 94 aa8.18□□□□□ -1.1
NPHP4-208ENST00000478423 KRTAP21-3Q3LHN1 58 aa8.17□□□□□ -1.1
NPHP4-208ENST00000478423 DMAC1Q96GE9 116 aa8.17□□□□□ -1.1
NPHP4-208ENST00000478423 KRTAP13-2Q52LG2 175 aa8.17□□□□□ -1.1
NPHP4-208ENST00000478423 ASB16-AS1Q495Z4 193 aa8.15□□□□□ -1.1
NPHP4-208ENST00000478423 S4R3F8 94 aa8.15□□□□□ -1.1
NPHP4-208ENST00000478423 SEC61BP60468 96 aaKnown RBP8.15□□□□□ -1.11
NPHP4-208ENST00000478423 ZFHX3Q15911 3703 aa8.15□□□□□ -1.11
NPHP4-208ENST00000478423 LCA10Q71F78 164 aa8.13□□□□□ -1.11
NPHP4-208ENST00000478423 M0R2T5 61 aa8.12□□□□□ -1.11
NPHP4-208ENST00000478423 CAMK2N1Q7Z7J9 78 aa8.07□□□□□ -1.12
NPHP4-208ENST00000478423 SRRM2Q9UQ35 2752 aaKnown RBP8.07□□□□□ -1.12
NPHP4-208ENST00000478423 NBPF19A0A087WUL8 3843 aa8.07□□□□□ -1.12
NPHP4-208ENST00000478423 RPS29P62273 56 aaKnown RBP8.05□□□□□ -1.12
NPHP4-208ENST00000478423 R4GN34 69 aa8.02□□□□□ -1.13
NPHP4-208ENST00000478423 PRAC1Q96KF2 57 aa7.95□□□□□ -1.14
NPHP4-208ENST00000478423 RPL37P61927 97 aaKnown RBP7.91□□□□□ -1.14
NPHP4-208ENST00000478423 H1FX-AS1Q4G0G2 97 aa7.91□□□□□ -1.14
NPHP4-208ENST00000478423 A8MU10 97 aa7.9□□□□□ -1.15
NPHP4-208ENST00000478423 KRTAP1-4P0C5Y4 121 aa7.88□□□□□ -1.15
NPHP4-208ENST00000478423 M0QZ58 72 aa7.87□□□□□ -1.15
NPHP4-208ENST00000478423 SPATA8Q6RVD6 105 aa7.87□□□□□ -1.15
NPHP4-208ENST00000478423 ADM2Q7Z4H4 148 aa7.84□□□□□ -1.15
NPHP4-208ENST00000478423 A8MUU9 505 aa7.78□□□□□ -1.16
NPHP4-208ENST00000478423 FBN3Q75N90 2809 aa7.77□□□□□ -1.17
NPHP4-208ENST00000478423 BSNQ9UPA5 3926 aa7.77□□□□□ -1.17
NPHP4-208ENST00000478423 C20orf166-AS1Q96NR2 134 aa7.76□□□□□ -1.17
NPHP4-208ENST00000478423 VPS13CQ709C8 3753 aa7.74□□□□□ -1.17
NPHP4-208ENST00000478423 ROMO1P60602 79 aa7.73□□□□□ -1.17
NPHP4-208ENST00000478423 LUZP6Q538Z0 58 aa7.72□□□□□ -1.17
NPHP4-208ENST00000478423 TRRAPQ9Y4A5 3859 aa7.69□□□□□ -1.18
NPHP4-208ENST00000478423 COL7A1Q02388 2944 aa7.65□□□□□ -1.18
NPHP4-208ENST00000478423 XP32Q5T750 250 aa7.62□□□□□ -1.19
NPHP4-208ENST00000478423 MEGF8Q7Z7M0 2845 aa7.58□□□□□ -1.2
NPHP4-208ENST00000478423 KRTAP16-1A8MUX0 517 aa7.57□□□□□ -1.2
NPHP4-208ENST00000478423 A6NN06 94 aa7.56□□□□□ -1.2
NPHP4-208ENST00000478423 PLAC4Q8WY50 150 aa7.56□□□□□ -1.2
NPHP4-208ENST00000478423 H3BS24 57 aa7.53□□□□□ -1.2
NPHP4-208ENST00000478423 ANK3Q12955 4377 aaKnown RBP7.52□□□□□ -1.21
NPHP4-208ENST00000478423 A0A1B0GVY2 172 aa7.49□□□□□ -1.21
NPHP4-208ENST00000478423 TPRXLQ17RH7 258 aa7.46□□□□□ -1.21
NPHP4-208ENST00000478423 CSMD3Q7Z407 3707 aa7.45□□□□□ -1.22
NPHP4-208ENST00000478423 KRTAP13-3Q3SY46 172 aa7.43□□□□□ -1.22
NPHP4-208ENST00000478423 KRTAP10-8P60410 259 aa7.42□□□□□ -1.22
NPHP4-208ENST00000478423 KRTAP25-1Q3LHN0 102 aa7.4□□□□□ -1.23
NPHP4-208ENST00000478423 ZNF469Q96JG9 3925 aaPredicted RBP7.34□□□□□ -1.23
NPHP4-208ENST00000478423 H0YAA0 97 aa7.3□□□□□ -1.24
NPHP4-208ENST00000478423 P0C880 135 aa7.24□□□□□ -1.25
NPHP4-208ENST00000478423 TNP1P09430 55 aa7.23□□□□□ -1.25
NPHP4-208ENST00000478423 A0A0A0MQY5 61 aa7.19□□□□□ -1.26
NPHP4-208ENST00000478423 C10orf95Q9H7T3 257 aa7.13□□□□□ -1.27
NPHP4-208ENST00000478423 KRTAP10-10P60014 251 aa7.09□□□□□ -1.27
NPHP4-208ENST00000478423 KRTAP3-1Q9BYR8 98 aa7.04□□□□□ -1.28
NPHP4-208ENST00000478423 NDUFAF8A1L188 74 aa7.01□□□□□ -1.29
NPHP4-208ENST00000478423 PP632Q6XCG6 107 aa6.99□□□□□ -1.29
NPHP4-208ENST00000478423 AKAP9Q99996 3911 aa6.98□□□□□ -1.29
NPHP4-208ENST00000478423 HUWE1Q7Z6Z7 4374 aaKnown RBP6.97□□□□□ -1.29
NPHP4-208ENST00000478423 MT1HL1P0DM35 61 aa6.93□□□□□ -1.3
NPHP4-208ENST00000478423 KRTAP10-4P60372 401 aaPredicted RBP6.87□□□□□ -1.31
NPHP4-208ENST00000478423 KRTAP12-2P59991 146 aa6.86□□□□□ -1.31
NPHP4-208ENST00000478423 DNHD1Q96M86 4753 aa6.81□□□□□ -1.32
NPHP4-208ENST00000478423 PRO2289Q9P1D8 64 aa6.8□□□□□ -1.32
NPHP4-208ENST00000478423 KRTAP12-1P59990 96 aa6.8□□□□□ -1.32
NPHP4-208ENST00000478423 KRTAP4-5Q9BYR2 181 aa6.78□□□□□ -1.32
NPHP4-208ENST00000478423 KRTAP10-6P60371 365 aaPredicted RBP6.77□□□□□ -1.33
NPHP4-208ENST00000478423 DNAH9Q9NYC9 4486 aa6.74□□□□□ -1.33
NPHP4-208ENST00000478423 KRTAP13-4Q3LI77 160 aa6.74□□□□□ -1.33
NPHP4-208ENST00000478423 DNAH5Q8TE73 4624 aa6.67□□□□□ -1.34
NPHP4-208ENST00000478423 DNAH10Q8IVF4 4471 aa6.64□□□□□ -1.35
NPHP4-208ENST00000478423 PLECQ15149 4684 aaKnown RBP6.62□□□□□ -1.35
NPHP4-208ENST00000478423 KRTAP3-3Q9BYR6 98 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms