RNA–Protein interactions for RNA: ENST00000475540.1

SMC5-203, Transcript of structural maintenance of chromosomes 5, humanhuman

TSL 3

Gene SMC5, Length 688 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC5-203ENST00000475540 DUOX2Q9NRD8 1548 aa0.96□□□□□ -2.26
SMC5-203ENST00000475540 Q5BKY6 102 aa0.96□□□□□ -2.26
SMC5-203ENST00000475540 USF3Q68DE3 2245 aa0.96□□□□□ -2.26
SMC5-203ENST00000475540 ABCA10Q8WWZ4 1543 aa0.95□□□□□ -2.26
SMC5-203ENST00000475540 HMCN2Q8NDA2 5059 aa0.95□□□□□ -2.26
SMC5-203ENST00000475540 A0A087WXM4 84 aa0.95□□□□□ -2.26
SMC5-203ENST00000475540 SMIM13P0DJ93 91 aa0.95□□□□□ -2.26
SMC5-203ENST00000475540 SMR3AQ99954 134 aa0.95□□□□□ -2.26
SMC5-203ENST00000475540 SMCO4Q9NRQ5 59 aa0.95□□□□□ -2.26
SMC5-203ENST00000475540 CPSF4LA6NMK7 179 aaKnown RBP0.94□□□□□ -2.26
SMC5-203ENST00000475540 KRTAP2-3P0C7H8 128 aa0.94□□□□□ -2.26
SMC5-203ENST00000475540 KRTAP2-4Q9BYR9 128 aa0.94□□□□□ -2.26
SMC5-203ENST00000475540 KRTAP2-1Q9BYU5 128 aa0.94□□□□□ -2.26
SMC5-203ENST00000475540 ALS2Q96Q42 1657 aa0.94□□□□□ -2.26
SMC5-203ENST00000475540 SPRR1BP22528 89 aa0.93□□□□□ -2.26
SMC5-203ENST00000475540 IFI27P40305 119 aaPredicted RBP0.93□□□□□ -2.26
SMC5-203ENST00000475540 TOP2AP11388 1531 aaKnown RBP0.93□□□□□ -2.26
SMC5-203ENST00000475540 FRAS1Q86XX4 4008 aa0.92□□□□□ -2.26
SMC5-203ENST00000475540 MYO5CQ9NQX4 1742 aa0.92□□□□□ -2.26
SMC5-203ENST00000475540 CLIP1P30622 1438 aa0.92□□□□□ -2.26
SMC5-203ENST00000475540 UMAD1C9J7I0 102 aa0.92□□□□□ -2.26
SMC5-203ENST00000475540 SPRR1AP35321 89 aa0.92□□□□□ -2.26
SMC5-203ENST00000475540 AHNAKQ09666 5890 aaKnown RBP0.92□□□□□ -2.26
SMC5-203ENST00000475540 PARP4Q9UKK3 1724 aaKnown RBP0.92□□□□□ -2.26
SMC5-203ENST00000475540 MUC5BQ9HC84 5762 aaPredicted RBP0.91□□□□□ -2.26
SMC5-203ENST00000475540 ERICH3Q5RHP9 1530 aa0.91□□□□□ -2.26
SMC5-203ENST00000475540 CCL22O00626 93 aa0.91□□□□□ -2.26
SMC5-203ENST00000475540 SPINK1P00995 79 aa0.91□□□□□ -2.26
SMC5-203ENST00000475540 MRPL34Q9BQ48 92 aaKnown RBP0.91□□□□□ -2.26
SMC5-203ENST00000475540 LY75O60449 1722 aa0.91□□□□□ -2.26
SMC5-203ENST00000475540 INO80Q9ULG1 1556 aaPredicted RBP0.91□□□□□ -2.26
SMC5-203ENST00000475540 BCORQ6W2J9 1755 aa0.91□□□□□ -2.26
SMC5-203ENST00000475540 ACACAQ13085 2346 aa0.9□□□□□ -2.26
SMC5-203ENST00000475540 PDCD5O14737 125 aa0.9□□□□□ -2.27
SMC5-203ENST00000475540 DEFB109BQ30KR1 87 aa0.9□□□□□ -2.27
SMC5-203ENST00000475540 ARFGEF2Q9Y6D5 1785 aa0.9□□□□□ -2.27
SMC5-203ENST00000475540 TNCP24821 2201 aa0.89□□□□□ -2.27
SMC5-203ENST00000475540 KMT2AQ03164 3969 aa0.89□□□□□ -2.27
SMC5-203ENST00000475540 PKDREJQ9NTG1 2253 aa0.89□□□□□ -2.27
SMC5-203ENST00000475540 IFI6P09912 130 aa0.89□□□□□ -2.27
SMC5-203ENST00000475540 TOGARAM1Q9Y4F4 1720 aa0.89□□□□□ -2.27
SMC5-203ENST00000475540 IQGAP3Q86VI3 1631 aa0.89□□□□□ -2.27
SMC5-203ENST00000475540 LMO7Q8WWI1 1683 aa0.88□□□□□ -2.27
SMC5-203ENST00000475540 TRRAPQ9Y4A5 3859 aa0.88□□□□□ -2.27
SMC5-203ENST00000475540 KMT2DO14686 5537 aa0.88□□□□□ -2.27
SMC5-203ENST00000475540 DEFB105AQ8NG35 78 aa0.88□□□□□ -2.27
SMC5-203ENST00000475540 DYNC2H1Q8NCM8 4307 aaKnown RBP0.88□□□□□ -2.27
SMC5-203ENST00000475540 DNAH1Q9P2D7 4330 aa0.88□□□□□ -2.27
SMC5-203ENST00000475540 TRPM2O94759 1503 aa0.88□□□□□ -2.27
SMC5-203ENST00000475540 SYCP2Q9BX26 1530 aa0.88□□□□□ -2.27
SMC5-203ENST00000475540 SACSQ9NZJ4 4579 aa0.88□□□□□ -2.27
SMC5-203ENST00000475540 HECTD4Q9Y4D8 3996 aa0.88□□□□□ -2.27
SMC5-203ENST00000475540 SRRM2Q9UQ35 2752 aaKnown RBP0.87□□□□□ -2.27
SMC5-203ENST00000475540 DEFA5Q01523 94 aa0.87□□□□□ -2.27
SMC5-203ENST00000475540 FXYD6Q9H0Q3 95 aa0.87□□□□□ -2.27
SMC5-203ENST00000475540 C4AP0C0L4 1744 aa0.86□□□□□ -2.27
SMC5-203ENST00000475540 DOT1LQ8TEK3 1739 aa0.86□□□□□ -2.27
SMC5-203ENST00000475540 EIF2AK4Q9P2K8 1649 aaKnown RBP0.86□□□□□ -2.27
SMC5-203ENST00000475540 NREPQ16612 68 aa0.86□□□□□ -2.27
SMC5-203ENST00000475540 CD163L1Q9NR16 1453 aa0.86□□□□□ -2.27
SMC5-203ENST00000475540 ABCC6O95255 1503 aa0.85□□□□□ -2.27
SMC5-203ENST00000475540 LCE6AA0A183 80 aa0.85□□□□□ -2.27
SMC5-203ENST00000475540 SPINK4O60575 86 aa0.85□□□□□ -2.27
SMC5-203ENST00000475540 HMGA1P17096 107 aaKnown RBP0.85□□□□□ -2.27
SMC5-203ENST00000475540 IQGAP2Q13576 1575 aa0.85□□□□□ -2.27
SMC5-203ENST00000475540 ANKRD50Q9ULJ7 1429 aa0.85□□□□□ -2.27
SMC5-203ENST00000475540 APLNQ9ULZ1 77 aa0.85□□□□□ -2.27
SMC5-203ENST00000475540 CMYA5Q8N3K9 4069 aa0.85□□□□□ -2.27
SMC5-203ENST00000475540 PKHD1P08F94 4074 aa0.84□□□□□ -2.27
SMC5-203ENST00000475540 DDX60LQ5H9U9 1706 aaKnown RBP0.84□□□□□ -2.28
SMC5-203ENST00000475540 DDX60Q8IY21 1712 aaKnown RBP0.84□□□□□ -2.28
SMC5-203ENST00000475540 PLXNC1O60486 1568 aa0.83□□□□□ -2.28
SMC5-203ENST00000475540 SMIM5Q71RC9 77 aa0.83□□□□□ -2.28
SMC5-203ENST00000475540 CSMD3Q7Z407 3707 aa0.83□□□□□ -2.28
SMC5-203ENST00000475540 CDC42BPGQ6DT37 1551 aa0.83□□□□□ -2.28
SMC5-203ENST00000475540 KIF1AQ12756 1690 aa0.82□□□□□ -2.28
SMC5-203ENST00000475540 CDC42BPAQ5VT25 1732 aa0.82□□□□□ -2.28
SMC5-203ENST00000475540 USH2AO75445 5202 aa0.82□□□□□ -2.28
SMC5-203ENST00000475540 LYSTQ99698 3801 aa0.81□□□□□ -2.28
SMC5-203ENST00000475540 COX6B2Q6YFQ2 88 aa0.81□□□□□ -2.28
SMC5-203ENST00000475540 C4BP0C0L5 1744 aa0.81□□□□□ -2.28
SMC5-203ENST00000475540 FAT3Q8TDW7 4589 aa0.81□□□□□ -2.28
SMC5-203ENST00000475540 AKAP6Q13023 2319 aa0.8□□□□□ -2.28
SMC5-203ENST00000475540 KNL1Q8NG31 2342 aa0.8□□□□□ -2.28
SMC5-203ENST00000475540 HEPN1Q6WQI6 88 aa0.8□□□□□ -2.28
SMC5-203ENST00000475540 U3KQA8 63 aa0.8□□□□□ -2.28
SMC5-203ENST00000475540 MUC12Q9UKN1 5478 aa0.8□□□□□ -2.28
SMC5-203ENST00000475540 HSPG2P98160 4391 aa0.8□□□□□ -2.28
SMC5-203ENST00000475540 MYCBP2O75592 4640 aa0.79□□□□□ -2.28
SMC5-203ENST00000475540 NDUFA4O00483 81 aa0.79□□□□□ -2.28
SMC5-203ENST00000475540 H1FX-AS1Q4G0G2 97 aa0.79□□□□□ -2.28
SMC5-203ENST00000475540 CDKN2A-AS1Q9UH64 79 aa0.79□□□□□ -2.28
SMC5-203ENST00000475540 FAM208AQ9UK61 1670 aaKnown RBP0.78□□□□□ -2.28
SMC5-203ENST00000475540 MUC5ACP98088 5654 aa0.78□□□□□ -2.28
SMC5-203ENST00000475540 H3BVH4 76 aa0.78□□□□□ -2.28
SMC5-203ENST00000475540 KLK9Q2XQG4 91 aa0.78□□□□□ -2.28
SMC5-203ENST00000475540 LELP1Q5T871 98 aa0.78□□□□□ -2.28
SMC5-203ENST00000475540 DSTQ03001 7570 aaKnown RBP0.78□□□□□ -2.28
SMC5-203ENST00000475540 MDN1Q9NU22 5596 aa0.77□□□□□ -2.29
SMC5-203ENST00000475540 LRP2P98164 4655 aa0.77□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 173.4 ms