RNA–Protein interactions for RNA: ENST00000474742.1

HDAC9-222, Transcript of histone deacetylase 9, human

TSL 3

Gene HDAC9, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-222	ENST00000474742	RIF1	Q5UIP0	2472 aa	Known RBP	0.22	□□□□□ -2.37
HDAC9-222	ENST00000474742	UTP20	O75691	2785 aa	Known RBP	0.22	□□□□□ -2.37
HDAC9-222	ENST00000474742	CELSR2	Q9HCU4	2923 aa		0.21	□□□□□ -2.38
HDAC9-222	ENST00000474742	EPG5	Q9HCE0	2579 aa		0.21	□□□□□ -2.38
HDAC9-222	ENST00000474742	DSP	P15924	2871 aa	Known RBP	0.21	□□□□□ -2.38
HDAC9-222	ENST00000474742	SRRM2	Q9UQ35	2752 aa	Known RBP	0.21	□□□□□ -2.38
HDAC9-222	ENST00000474742	SON	P18583	2426 aa	Known RBP	0.21	□□□□□ -2.38
HDAC9-222	ENST00000474742	DMBT1	Q9UGM3	2413 aa	Predicted RBP	0.21	□□□□□ -2.38
HDAC9-222	ENST00000474742	RPL39	P62891	51 aa	Known RBP	0.21	□□□□□ -2.38
HDAC9-222	ENST00000474742	CLPSL2	Q6UWE3	100 aa		0.21	□□□□□ -2.38
HDAC9-222	ENST00000474742	RHPN1-AS1	Q9BWJ2	59 aa		0.21	□□□□□ -2.38
HDAC9-222	ENST00000474742	FLNA	P21333	2647 aa	Known RBP	0.21	□□□□□ -2.38
HDAC9-222	ENST00000474742	SETD2	Q9BYW2	2564 aa	Predicted RBP	0.21	□□□□□ -2.38
HDAC9-222	ENST00000474742	CEP250	Q9BV73	2442 aa		0.21	□□□□□ -2.38
HDAC9-222	ENST00000474742	SETX	Q7Z333	2677 aa	Known RBP	0.2	□□□□□ -2.38
HDAC9-222	ENST00000474742	REV3L	O60673	3130 aa		0.2	□□□□□ -2.38
HDAC9-222	ENST00000474742	FLNB	O75369	2602 aa	Known RBP	0.2	□□□□□ -2.38
HDAC9-222	ENST00000474742	MROH2B	Q7Z745	1585 aa		0.2	□□□□□ -2.38
HDAC9-222	ENST00000474742	CACNA1A	O00555	2505 aa		0.2	□□□□□ -2.38
HDAC9-222	ENST00000474742	CCDC168	Q8NDH2	2452 aa		0.2	□□□□□ -2.38
HDAC9-222	ENST00000474742	RPL39L	Q96EH5	51 aa	Known RBP	0.2	□□□□□ -2.38
HDAC9-222	ENST00000474742	ARHGAP5-AS1	Q96IT6	56 aa		0.2	□□□□□ -2.38
HDAC9-222	ENST00000474742	PRRC2C	Q9Y520	2896 aa	Known RBP	0.2	□□□□□ -2.38
HDAC9-222	ENST00000474742	SPTBN4	Q9H254	2564 aa		0.2	□□□□□ -2.38
HDAC9-222	ENST00000474742	TENM4	Q6N022	2769 aa		0.2	□□□□□ -2.38
HDAC9-222	ENST00000474742	OTOG	Q6ZRI0	2925 aa		0.2	□□□□□ -2.38
HDAC9-222	ENST00000474742	SPTAN1	Q13813	2472 aa	Known RBP	0.2	□□□□□ -2.38
HDAC9-222	ENST00000474742	VWF	P04275	2813 aa		0.19	□□□□□ -2.38
HDAC9-222	ENST00000474742	NF1	P21359	2839 aa		0.19	□□□□□ -2.38
HDAC9-222	ENST00000474742	AKAP13	Q12802	2813 aa		0.19	□□□□□ -2.38
HDAC9-222	ENST00000474742	PKD1L1	Q8TDX9	2849 aa		0.19	□□□□□ -2.38
HDAC9-222	ENST00000474742	DCHS2	Q6V1P9	2916 aa		0.19	□□□□□ -2.38
HDAC9-222	ENST00000474742		H3BUX3	64 aa		0.19	□□□□□ -2.38
HDAC9-222	ENST00000474742	CD52	P31358	61 aa		0.19	□□□□□ -2.38
HDAC9-222	ENST00000474742	PRCD	Q00LT1	54 aa		0.19	□□□□□ -2.38
HDAC9-222	ENST00000474742	LEAP2	Q969E1	77 aa		0.19	□□□□□ -2.38
HDAC9-222	ENST00000474742	SMR3A	Q99954	134 aa		0.19	□□□□□ -2.38
HDAC9-222	ENST00000474742	MUC2	Q02817	5179 aa		0.19	□□□□□ -2.38
HDAC9-222	ENST00000474742	FLNC	Q14315	2725 aa		0.19	□□□□□ -2.38
HDAC9-222	ENST00000474742	ANKHD1	Q8IWZ3	2542 aa	Known RBP	0.19	□□□□□ -2.38
HDAC9-222	ENST00000474742	GCN1	Q92616	2671 aa	Known RBP	0.19	□□□□□ -2.38
HDAC9-222	ENST00000474742	MAST4	O15021	2626 aa		0.18	□□□□□ -2.38
HDAC9-222	ENST00000474742	FRAS1	Q86XX4	4008 aa		0.18	□□□□□ -2.38
HDAC9-222	ENST00000474742	STAB2	Q8WWQ8	2551 aa		0.18	□□□□□ -2.38
HDAC9-222	ENST00000474742	FASN	P49327	2511 aa	Known RBP	0.18	□□□□□ -2.38
HDAC9-222	ENST00000474742	MGAM2	Q2M2H8	2515 aa		0.18	□□□□□ -2.38
HDAC9-222	ENST00000474742	ANKRD11	Q6UB99	2663 aa	Predicted RBP	0.18	□□□□□ -2.38
HDAC9-222	ENST00000474742	NBEAL1	Q6ZS30	2694 aa		0.18	□□□□□ -2.38
HDAC9-222	ENST00000474742	HTN1	P15515	57 aa		0.18	□□□□□ -2.38
HDAC9-222	ENST00000474742	TTTY10	Q9BZA0	68 aa		0.18	□□□□□ -2.38
HDAC9-222	ENST00000474742	TG	P01266	2768 aa		0.18	□□□□□ -2.38
HDAC9-222	ENST00000474742	NBEA	Q8NFP9	2946 aa		0.18	□□□□□ -2.38
HDAC9-222	ENST00000474742	MYO18B	Q8IUG5	2567 aa		0.18	□□□□□ -2.38
HDAC9-222	ENST00000474742	TLN2	Q9Y4G6	2542 aa		0.18	□□□□□ -2.38
HDAC9-222	ENST00000474742	NSD1	Q96L73	2696 aa	Predicted RBP	0.18	□□□□□ -2.38
HDAC9-222	ENST00000474742	ZZEF1	O43149	2961 aa		0.18	□□□□□ -2.38
HDAC9-222	ENST00000474742	DOPEY1	Q5JWR5	2465 aa		0.18	□□□□□ -2.38
HDAC9-222	ENST00000474742	COL6A5	A8TX70	2615 aa		0.17	□□□□□ -2.38
HDAC9-222	ENST00000474742	NBEAL2	Q6ZNJ1	2754 aa		0.17	□□□□□ -2.38
HDAC9-222	ENST00000474742		A0A0C4DFX4	3053 aa		0.17	□□□□□ -2.38
HDAC9-222	ENST00000474742	USP9Y	O00507	2555 aa	Predicted RBP	0.17	□□□□□ -2.38
HDAC9-222	ENST00000474742	USP9X	Q93008	2570 aa	Predicted RBP	0.17	□□□□□ -2.38
HDAC9-222	ENST00000474742	HIVEP1	P15822	2718 aa		0.17	□□□□□ -2.38
HDAC9-222	ENST00000474742	TNRC18	O15417	2968 aa	Predicted RBP	0.17	□□□□□ -2.38
HDAC9-222	ENST00000474742	ALMS1	Q8TCU4	4167 aa		0.17	□□□□□ -2.38
HDAC9-222	ENST00000474742		H3BSH0	61 aa		0.17	□□□□□ -2.38
HDAC9-222	ENST00000474742		K7EIM0	57 aa		0.17	□□□□□ -2.38
HDAC9-222	ENST00000474742	ACACB	O00763	2458 aa		0.17	□□□□□ -2.38
HDAC9-222	ENST00000474742	DEFB133	Q30KQ1	61 aa		0.17	□□□□□ -2.38
HDAC9-222	ENST00000474742	TMEM167A	Q8TBQ9	72 aa		0.17	□□□□□ -2.38
HDAC9-222	ENST00000474742		Q9Y3F1	56 aa		0.17	□□□□□ -2.38
HDAC9-222	ENST00000474742	HTT	P42858	3142 aa		0.16	□□□□□ -2.38
HDAC9-222	ENST00000474742	ANK2	Q01484	3957 aa		0.16	□□□□□ -2.38
HDAC9-222	ENST00000474742		A0A096LNI7	61 aa		0.16	□□□□□ -2.38
HDAC9-222	ENST00000474742	DEFB1	P60022	68 aa		0.16	□□□□□ -2.38
HDAC9-222	ENST00000474742	DEFB136	Q30KP8	78 aa		0.16	□□□□□ -2.38
HDAC9-222	ENST00000474742	DEFB104A	Q8WTQ1	72 aa		0.16	□□□□□ -2.38
HDAC9-222	ENST00000474742	MXRA5	Q9NR99	2828 aa		0.16	□□□□□ -2.38
HDAC9-222	ENST00000474742	COL12A1	Q99715	3063 aa		0.16	□□□□□ -2.38
HDAC9-222	ENST00000474742	CSMD3	Q7Z407	3707 aa		0.16	□□□□□ -2.38
HDAC9-222	ENST00000474742	MYO9A	B2RTY4	2548 aa		0.16	□□□□□ -2.38
HDAC9-222	ENST00000474742	FRY	Q5TBA9	3013 aa		0.16	□□□□□ -2.38
HDAC9-222	ENST00000474742	ZAN	Q9Y493	2812 aa		0.15	□□□□□ -2.38
HDAC9-222	ENST00000474742	DMXL1	Q9Y485	3027 aa		0.15	□□□□□ -2.39
HDAC9-222	ENST00000474742	TEX15	Q9BXT5	2789 aa		0.15	□□□□□ -2.39
HDAC9-222	ENST00000474742	TENM2	Q9NT68	2774 aa		0.15	□□□□□ -2.39
HDAC9-222	ENST00000474742	HRNR	Q86YZ3	2850 aa	Predicted RBP	0.15	□□□□□ -2.39
HDAC9-222	ENST00000474742	TEP1	Q99973	2627 aa	Known RBP	0.15	□□□□□ -2.39
HDAC9-222	ENST00000474742	KALRN	O60229	2985 aa		0.15	□□□□□ -2.39
HDAC9-222	ENST00000474742	PRM1	P04553	51 aa		0.15	□□□□□ -2.39
HDAC9-222	ENST00000474742	KRTAP2-3	P0C7H8	128 aa		0.15	□□□□□ -2.39
HDAC9-222	ENST00000474742	SPRR2D	P22532	72 aa		0.15	□□□□□ -2.39
HDAC9-222	ENST00000474742	SPRR2B	P35325	72 aa		0.15	□□□□□ -2.39
HDAC9-222	ENST00000474742	KRTAP19-3	Q7Z4W3	81 aa		0.15	□□□□□ -2.39
HDAC9-222	ENST00000474742	KRTAP2-4	Q9BYR9	128 aa		0.15	□□□□□ -2.39
HDAC9-222	ENST00000474742	KRTAP2-1	Q9BYU5	128 aa		0.15	□□□□□ -2.39
HDAC9-222	ENST00000474742	FAT4	Q6V0I7	4981 aa		0.15	□□□□□ -2.39
HDAC9-222	ENST00000474742	TACC2	O95359	2948 aa		0.14	□□□□□ -2.39
HDAC9-222	ENST00000474742	STAB1	Q9NY15	2570 aa		0.14	□□□□□ -2.39
HDAC9-222	ENST00000474742	HUWE1	Q7Z6Z7	4374 aa	Known RBP	0.14	□□□□□ -2.39

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