RNA–Protein interactions for RNA: ENST00000473212.1

COL18A1-207, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 2,515 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-207ENST00000473212 Q6ZR54 194 aa12.61□□□□□ -0.39
COL18A1-207ENST00000473212 RTL8CO15255 209 aa12.61□□□□□ -0.39
COL18A1-207ENST00000473212 A0A087X002 238 aa12.6□□□□□ -0.39
COL18A1-207ENST00000473212 NOTCH2NLQ7Z3S9 236 aa12.6□□□□□ -0.39
COL18A1-207ENST00000473212 ZNF706Q9Y5V0 76 aaPredicted RBP12.6□□□□□ -0.39
COL18A1-207ENST00000473212 CDK2AP2O75956 126 aa12.59□□□□□ -0.39
COL18A1-207ENST00000473212 DNAH6Q9C0G6 4158 aa12.58□□□□□ -0.4
COL18A1-207ENST00000473212 IGLV5-52A0A0A0MRZ9 124 aa12.57□□□□□ -0.4
COL18A1-207ENST00000473212 MRPL34Q9BQ48 92 aaKnown RBP12.56□□□□□ -0.4
COL18A1-207ENST00000473212 PMAIP1Q13794 54 aa12.54□□□□□ -0.4
COL18A1-207ENST00000473212 ZNF861PO60384 105 aa12.52□□□□□ -0.4
COL18A1-207ENST00000473212 LOC101927531A0A1B0GV80 90 aa12.5□□□□□ -0.41
COL18A1-207ENST00000473212 Q75L30 129 aa12.5□□□□□ -0.41
COL18A1-207ENST00000473212 ALMS1Q8TCU4 4167 aa12.49□□□□□ -0.41
COL18A1-207ENST00000473212 SPAG11AQ6PDA7 123 aa12.48□□□□□ -0.41
COL18A1-207ENST00000473212 SPINK6Q6UWN8 80 aa12.48□□□□□ -0.41
COL18A1-207ENST00000473212 PLAC8Q9NZF1 115 aa12.47□□□□□ -0.41
COL18A1-207ENST00000473212 DNAH11Q96DT5 4516 aa12.46□□□□□ -0.41
COL18A1-207ENST00000473212 A6NED7 52 aa12.46□□□□□ -0.42
COL18A1-207ENST00000473212 HRES1P13985 223 aa12.45□□□□□ -0.42
COL18A1-207ENST00000473212 LCA10Q71F78 164 aa12.44□□□□□ -0.42
COL18A1-207ENST00000473212 DNAH5Q8TE73 4624 aa12.41□□□□□ -0.42
COL18A1-207ENST00000473212 SPTSSBQ8NFR3 76 aa12.41□□□□□ -0.42
COL18A1-207ENST00000473212 LINC01558Q9Y6Z2 57 aa12.41□□□□□ -0.42
COL18A1-207ENST00000473212 Q5W150 140 aa12.4□□□□□ -0.42
COL18A1-207ENST00000473212 CIRBP-AS1Q8TBR5 109 aa12.39□□□□□ -0.43
COL18A1-207ENST00000473212 SEC61GP60059 68 aa12.37□□□□□ -0.43
COL18A1-207ENST00000473212 IGLV7-43P04211 117 aa12.35□□□□□ -0.43
COL18A1-207ENST00000473212 KRTAP13-3Q3SY46 172 aa12.33□□□□□ -0.44
COL18A1-207ENST00000473212 C1orf134Q5TEV5 83 aa12.33□□□□□ -0.44
COL18A1-207ENST00000473212 ATP11AUNQ6ZP68 121 aa12.32□□□□□ -0.44
COL18A1-207ENST00000473212 LY6G6CO95867 125 aa12.31□□□□□ -0.44
COL18A1-207ENST00000473212 CDC42SE1Q9NRR8 79 aa12.3□□□□□ -0.44
COL18A1-207ENST00000473212 KRTAP10-2P60368 255 aa12.3□□□□□ -0.44
COL18A1-207ENST00000473212 LRP1BQ9NZR2 4599 aa12.3□□□□□ -0.44
COL18A1-207ENST00000473212 PRR26Q8N8Z3 221 aa12.28□□□□□ -0.44
COL18A1-207ENST00000473212 SPINK7P58062 85 aa12.26□□□□□ -0.45
COL18A1-207ENST00000473212 HYDINQ4G0P3 5121 aa12.23□□□□□ -0.45
COL18A1-207ENST00000473212 SSBP3-AS1Q7Z2R9 100 aa12.22□□□□□ -0.45
COL18A1-207ENST00000473212 RETNLBQ9BQ08 111 aa12.21□□□□□ -0.45
COL18A1-207ENST00000473212 C8orf87E5RJ46 101 aa12.21□□□□□ -0.45
COL18A1-207ENST00000473212 KTN1-AS1Q86SY8 53 aa12.19□□□□□ -0.46
COL18A1-207ENST00000473212 A6NN06 94 aa12.18□□□□□ -0.46
COL18A1-207ENST00000473212 ACYP2P14621 99 aa12.18□□□□□ -0.46
COL18A1-207ENST00000473212 LINC00313P59037 77 aa12.17□□□□□ -0.46
COL18A1-207ENST00000473212 PKD1P98161 4303 aa12.17□□□□□ -0.46
COL18A1-207ENST00000473212 KRTAP13-2Q52LG2 175 aa12.16□□□□□ -0.46
COL18A1-207ENST00000473212 VPS13BQ7Z7G8 4022 aa12.14□□□□□ -0.47
COL18A1-207ENST00000473212 FAT2Q9NYQ8 4349 aa12.12□□□□□ -0.47
COL18A1-207ENST00000473212 DMAC1Q96GE9 116 aa12.11□□□□□ -0.47
COL18A1-207ENST00000473212 FAM229AH3BQW9 127 aa12.1□□□□□ -0.47
COL18A1-207ENST00000473212 KRTAP10-1P60331 282 aa12.1□□□□□ -0.47
COL18A1-207ENST00000473212 IGKV2-30P06310 120 aa12.05□□□□□ -0.48
COL18A1-207ENST00000473212 KRTAP16-1A8MUX0 517 aa12□□□□□ -0.49
COL18A1-207ENST00000473212 KRTAP1-4P0C5Y4 121 aa11.98□□□□□ -0.49
COL18A1-207ENST00000473212 RBM12B-AS1Q9P1G2 102 aa11.98□□□□□ -0.49
COL18A1-207ENST00000473212 Q6ZSA8 131 aa11.97□□□□□ -0.49
COL18A1-207ENST00000473212 PKHD1P08F94 4074 aa11.97□□□□□ -0.49
COL18A1-207ENST00000473212 C7orf65Q6ZTY9 151 aa11.97□□□□□ -0.49
COL18A1-207ENST00000473212 A0A1B0GU69 56 aa11.94□□□□□ -0.5
COL18A1-207ENST00000473212 IGKV2D-30A0A075B6S6 120 aa11.93□□□□□ -0.5
COL18A1-207ENST00000473212 PLA2G1BP04054 148 aaKnown RBP11.84□□□□□ -0.51
COL18A1-207ENST00000473212 C4orf48Q5BLP8 95 aa11.8□□□□□ -0.52
COL18A1-207ENST00000473212 KRTAP21-3Q3LHN1 58 aa11.79□□□□□ -0.52
COL18A1-207ENST00000473212 SPATA8Q6RVD6 105 aa11.79□□□□□ -0.52
COL18A1-207ENST00000473212 TYMSOSQ8TAI1 123 aa11.78□□□□□ -0.52
COL18A1-207ENST00000473212 MIR22HGQ0VDD5 57 aa11.74□□□□□ -0.53
COL18A1-207ENST00000473212 UQCR11O14957 56 aa11.74□□□□□ -0.53
COL18A1-207ENST00000473212 FAT1Q14517 4588 aa11.71□□□□□ -0.53
COL18A1-207ENST00000473212 SPINK1P00995 79 aa11.71□□□□□ -0.53
COL18A1-207ENST00000473212 PRAC1Q96KF2 57 aa11.7□□□□□ -0.54
COL18A1-207ENST00000473212 SACSQ9NZJ4 4579 aa11.7□□□□□ -0.54
COL18A1-207ENST00000473212 ADM2Q7Z4H4 148 aa11.68□□□□□ -0.54
COL18A1-207ENST00000473212 SMR3BP02814 79 aaPredicted RBP11.67□□□□□ -0.54
COL18A1-207ENST00000473212 Q8N1X5 172 aa11.67□□□□□ -0.54
COL18A1-207ENST00000473212 DYNC1H1Q14204 4646 aaKnown RBP11.66□□□□□ -0.54
COL18A1-207ENST00000473212 LINC00304Q8N9R0 145 aa11.59□□□□□ -0.55
COL18A1-207ENST00000473212 C9orf92A6NGG3 77 aa11.56□□□□□ -0.56
COL18A1-207ENST00000473212 APOBP04114 4563 aaKnown RBP11.49□□□□□ -0.57
COL18A1-207ENST00000473212 RPS29P62273 56 aaKnown RBP11.48□□□□□ -0.57
COL18A1-207ENST00000473212 PKHD1L1Q86WI1 4243 aa11.45□□□□□ -0.58
COL18A1-207ENST00000473212 KMT2CQ8NEZ4 4911 aaKnown RBP11.4□□□□□ -0.58
COL18A1-207ENST00000473212 A8MUU9 505 aa11.39□□□□□ -0.59
COL18A1-207ENST00000473212 C20orf166-AS1Q96NR2 134 aa11.38□□□□□ -0.59
COL18A1-207ENST00000473212 KRTAP10-4P60372 401 aaPredicted RBP11.37□□□□□ -0.59
COL18A1-207ENST00000473212 KRTAP3-1Q9BYR8 98 aa11.37□□□□□ -0.59
COL18A1-207ENST00000473212 H0YAA0 97 aa11.34□□□□□ -0.59
COL18A1-207ENST00000473212 LINC01554Q52M75 96 aa11.33□□□□□ -0.6
COL18A1-207ENST00000473212 CSAG1Q6PB30 78 aa11.32□□□□□ -0.6
COL18A1-207ENST00000473212 RYR2Q92736 4967 aa11.31□□□□□ -0.6
COL18A1-207ENST00000473212 LRP1Q07954 4544 aaKnown RBP11.31□□□□□ -0.6
COL18A1-207ENST00000473212 A0A1B0GVY2 172 aa11.29□□□□□ -0.6
COL18A1-207ENST00000473212 FLG2Q5D862 2391 aaPredicted RBP11.29□□□□□ -0.6
COL18A1-207ENST00000473212 A0A1B0GU33 70 aa11.25□□□□□ -0.61
COL18A1-207ENST00000473212 H1FX-AS1Q4G0G2 97 aa11.19□□□□□ -0.62
COL18A1-207ENST00000473212 MYCBP2O75592 4640 aa11.15□□□□□ -0.62
COL18A1-207ENST00000473212 FAT3Q8TDW7 4589 aa11.15□□□□□ -0.63
COL18A1-207ENST00000473212 HSPG2P98160 4391 aa11.14□□□□□ -0.63
COL18A1-207ENST00000473212 TNXBP22105 4242 aa11.12□□□□□ -0.63
COL18A1-207ENST00000473212 COX6B2Q6YFQ2 88 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms