RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 ANKRD29Q8N6D5 301 aa8.48□□□□□ -1.05
USP40-212ENST00000473191 H3BQ85 93 aa8.47□□□□□ -1.05
USP40-212ENST00000473191 H3BT86 120 aa8.47□□□□□ -1.05
USP40-212ENST00000473191 IGKV4-1P06312 121 aa8.47□□□□□ -1.05
USP40-212ENST00000473191 TRBV7-4A0A0J9YYF1 115 aa8.46□□□□□ -1.06
USP40-212ENST00000473191 BAALC-AS2P0C853 105 aa8.46□□□□□ -1.06
USP40-212ENST00000473191 F8W1H4 67 aa8.45□□□□□ -1.06
USP40-212ENST00000473191 TMEM256-PLSCR3K7ERE1 68 aa8.45□□□□□ -1.06
USP40-212ENST00000473191 KRTAP9-8Q9BYQ0 159 aa8.45□□□□□ -1.06
USP40-212ENST00000473191 LINC00313P59037 77 aa8.44□□□□□ -1.06
USP40-212ENST00000473191 LINC00472Q9H8W2 130 aa8.44□□□□□ -1.06
USP40-212ENST00000473191 PRO0461Q9UI25 63 aa8.43□□□□□ -1.06
USP40-212ENST00000473191 CCKP06307 115 aa8.42□□□□□ -1.06
USP40-212ENST00000473191 SMCPP49901 116 aaPredicted RBP8.39□□□□□ -1.07
USP40-212ENST00000473191 IGHV6-1A0A0B4J1U7 121 aa8.38□□□□□ -1.07
USP40-212ENST00000473191 HRES1P13985 223 aa8.36□□□□□ -1.07
USP40-212ENST00000473191 VPS25Q9BRG1 176 aa8.36□□□□□ -1.07
USP40-212ENST00000473191 USH2AO75445 5202 aa8.35□□□□□ -1.07
USP40-212ENST00000473191 JMJD7-PLA2G4BH0Y9G9 81 aa8.34□□□□□ -1.07
USP40-212ENST00000473191 ETDBQ3ZM63 59 aa8.34□□□□□ -1.07
USP40-212ENST00000473191 MPLKIPQ8TAP9 179 aa8.34□□□□□ -1.07
USP40-212ENST00000473191 MT2AP02795 61 aa8.31□□□□□ -1.08
USP40-212ENST00000473191 RBM3P98179 157 aaKnown RBP8.31□□□□□ -1.08
USP40-212ENST00000473191 FAM236DA0A1B0GTK5 79 aa8.3□□□□□ -1.08
USP40-212ENST00000473191 A0A1B0GVX0 72 aa8.3□□□□□ -1.08
USP40-212ENST00000473191 FAM236CP0DP71 79 aa8.3□□□□□ -1.08
USP40-212ENST00000473191 DSCR8Q96T75 97 aa8.3□□□□□ -1.08
USP40-212ENST00000473191 SSPOA2VEC9 5147 aa8.3□□□□□ -1.08
USP40-212ENST00000473191 C14orf132Q9NPU4 83 aa8.28□□□□□ -1.08
USP40-212ENST00000473191 MT1FP04733 61 aa8.26□□□□□ -1.09
USP40-212ENST00000473191 C8orf87E5RJ46 101 aa8.24□□□□□ -1.09
USP40-212ENST00000473191 PDE6GP18545 87 aa8.24□□□□□ -1.09
USP40-212ENST00000473191 C21orf62-AS1Q17RA5 79 aa8.24□□□□□ -1.09
USP40-212ENST00000473191 LOC110117498A0A087WWA1 95 aa8.23□□□□□ -1.09
USP40-212ENST00000473191 Q6ZQT0 140 aa8.23□□□□□ -1.09
USP40-212ENST00000473191 RBM12B-AS1Q9P1G2 102 aa8.23□□□□□ -1.09
USP40-212ENST00000473191 J3QR89 54 aa8.21□□□□□ -1.1
USP40-212ENST00000473191 LCE2BO14633 110 aa8.21□□□□□ -1.1
USP40-212ENST00000473191 ZCCHC13Q8WW36 166 aaKnown RBP8.21□□□□□ -1.1
USP40-212ENST00000473191 SPINK7P58062 85 aa8.18□□□□□ -1.1
USP40-212ENST00000473191 KRTAP9-3Q9BYQ3 159 aa8.18□□□□□ -1.1
USP40-212ENST00000473191 J3KT08 172 aa8.17□□□□□ -1.1
USP40-212ENST00000473191 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.16□□□□□ -1.1
USP40-212ENST00000473191 K7ERU9 68 aa8.16□□□□□ -1.1
USP40-212ENST00000473191 Q8N9P0 234 aaPredicted RBP8.16□□□□□ -1.1
USP40-212ENST00000473191 IGKV3D-7A0A0C4DH55 119 aa8.15□□□□□ -1.1
USP40-212ENST00000473191 C8orf17Q9NRJ1 99 aa8.15□□□□□ -1.1
USP40-212ENST00000473191 KRTAP10-10P60014 251 aa8.14□□□□□ -1.11
USP40-212ENST00000473191 A8MWP4 228 aa8.12□□□□□ -1.11
USP40-212ENST00000473191 ACYP1P07311 99 aa8.12□□□□□ -1.11
USP40-212ENST00000473191 FAM240AA0A1B0GVK7 77 aa8.11□□□□□ -1.11
USP40-212ENST00000473191 A0A1B0GW54 56 aa8.11□□□□□ -1.11
USP40-212ENST00000473191 NDUFB1O75438 58 aa8.11□□□□□ -1.11
USP40-212ENST00000473191 KRTAP19-1Q8IUB9 90 aa8.09□□□□□ -1.11
USP40-212ENST00000473191 FCGBPQ9Y6R7 5405 aaPredicted RBP8.08□□□□□ -1.12
USP40-212ENST00000473191 KRTAP9-7A8MTY7 169 aa8.07□□□□□ -1.12
USP40-212ENST00000473191 WFDC13Q8IUB5 93 aa8.07□□□□□ -1.12
USP40-212ENST00000473191 UBL5Q9BZL1 73 aa8.07□□□□□ -1.12
USP40-212ENST00000473191 Q6ZVQ6 151 aa8.06□□□□□ -1.12
USP40-212ENST00000473191 LINC00846Q9NV44 126 aa8.05□□□□□ -1.12
USP40-212ENST00000473191 PRR15Q8IV56 129 aa8.04□□□□□ -1.12
USP40-212ENST00000473191 MMP24-AS1A0A0U1RRL7 71 aa8.03□□□□□ -1.12
USP40-212ENST00000473191 NREPQ16612 68 aa8.03□□□□□ -1.12
USP40-212ENST00000473191 K7EQZ3 153 aa7.99□□□□□ -1.13
USP40-212ENST00000473191 MRPL34Q9BQ48 92 aaKnown RBP7.99□□□□□ -1.13
USP40-212ENST00000473191 TMEM254Q8TBM7 123 aa7.97□□□□□ -1.13
USP40-212ENST00000473191 LINC00643Q86TS7 51 aa7.95□□□□□ -1.14
USP40-212ENST00000473191 BPY2O14599 106 aa7.94□□□□□ -1.14
USP40-212ENST00000473191 ATP5EP2Q5VTU8 51 aa7.94□□□□□ -1.14
USP40-212ENST00000473191 hDV103S1A0JD37 113 aa7.93□□□□□ -1.14
USP40-212ENST00000473191 Q5W150 140 aa7.92□□□□□ -1.14
USP40-212ENST00000473191 NDUFS5O43920 106 aa7.91□□□□□ -1.14
USP40-212ENST00000473191 CXCL6P80162 114 aa7.9□□□□□ -1.14
USP40-212ENST00000473191 Q8N9L7 120 aa7.89□□□□□ -1.15
USP40-212ENST00000473191 KRTAP19-6Q3LI70 58 aa7.87□□□□□ -1.15
USP40-212ENST00000473191 H1FX-AS1Q4G0G2 97 aa7.87□□□□□ -1.15
USP40-212ENST00000473191 IGKV2D-30A0A075B6S6 120 aa7.86□□□□□ -1.15
USP40-212ENST00000473191 IGKV2-30P06310 120 aa7.86□□□□□ -1.15
USP40-212ENST00000473191 MACF1Q9UPN3 7388 aaKnown RBP7.85□□□□□ -1.15
USP40-212ENST00000473191 MT-ATP8P03928 68 aa7.84□□□□□ -1.15
USP40-212ENST00000473191 HIST1H4AP62805 103 aaKnown RBP7.84□□□□□ -1.15
USP40-212ENST00000473191 SYNE2Q8WXH0 6885 aaKnown RBP7.81□□□□□ -1.16
USP40-212ENST00000473191 HCG22E2RYF7 251 aa7.79□□□□□ -1.16
USP40-212ENST00000473191 C7orf65Q6ZTY9 151 aa7.79□□□□□ -1.16
USP40-212ENST00000473191 CASC2Q6XLA1 102 aa7.78□□□□□ -1.16
USP40-212ENST00000473191 IMUPQ9GZP8 106 aa7.78□□□□□ -1.16
USP40-212ENST00000473191 C4orf26Q17RF5 130 aa7.77□□□□□ -1.17
USP40-212ENST00000473191 A0A087WVE0 104 aa7.74□□□□□ -1.17
USP40-212ENST00000473191 KRTAP3-1Q9BYR8 98 aa7.7□□□□□ -1.18
USP40-212ENST00000473191 FAM236AA0A1B0GUQ0 79 aa7.67□□□□□ -1.18
USP40-212ENST00000473191 FAM236BA0A1B0GV22 79 aa7.67□□□□□ -1.18
USP40-212ENST00000473191 C5orf47Q569G3 176 aa7.66□□□□□ -1.18
USP40-212ENST00000473191 SCGB1A1P11684 91 aa7.64□□□□□ -1.19
USP40-212ENST00000473191 ATOX1O00244 68 aa7.59□□□□□ -1.19
USP40-212ENST00000473191 LCA10Q71F78 164 aa7.57□□□□□ -1.2
USP40-212ENST00000473191 C1orf64Q8NEQ6 169 aa7.57□□□□□ -1.2
USP40-212ENST00000473191 S4R3F8 94 aa7.57□□□□□ -1.2
USP40-212ENST00000473191 MT1BP07438 61 aa7.55□□□□□ -1.2
USP40-212ENST00000473191 SMIM20Q8N5G0 67 aa7.55□□□□□ -1.2
USP40-212ENST00000473191 TP53AIP1Q9HCN2 124 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms