RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 KRTAP16-1A8MUX0 517 aa9.97□□□□□ -0.81
COL9A3-210ENST00000472880 LINC00472Q9H8W2 130 aa9.96□□□□□ -0.82
COL9A3-210ENST00000472880 C9JAW5 83 aa9.95□□□□□ -0.82
COL9A3-210ENST00000472880 DEFB116Q30KQ4 102 aa9.93□□□□□ -0.82
COL9A3-210ENST00000472880 JMJD7-PLA2G4BH0Y9G9 81 aa9.92□□□□□ -0.82
COL9A3-210ENST00000472880 RBM12B-AS1Q9P1G2 102 aa9.92□□□□□ -0.82
COL9A3-210ENST00000472880 NOTCH2NLQ7Z3S9 236 aa9.91□□□□□ -0.82
COL9A3-210ENST00000472880 IGHV6-1A0A0B4J1U7 121 aa9.9□□□□□ -0.82
COL9A3-210ENST00000472880 USH2AO75445 5202 aa9.89□□□□□ -0.83
COL9A3-210ENST00000472880 C9orf118A6NHY6 69 aa9.89□□□□□ -0.83
COL9A3-210ENST00000472880 TAX1BP3O14907 124 aa9.89□□□□□ -0.83
COL9A3-210ENST00000472880 C21orf62-AS1Q17RA5 79 aa9.89□□□□□ -0.83
COL9A3-210ENST00000472880 Q6ZQT0 140 aa9.88□□□□□ -0.83
COL9A3-210ENST00000472880 LOC110117498A0A087WWA1 95 aa9.87□□□□□ -0.83
COL9A3-210ENST00000472880 MT2AP02795 61 aa9.87□□□□□ -0.83
COL9A3-210ENST00000472880 HRES1P13985 223 aa9.87□□□□□ -0.83
COL9A3-210ENST00000472880 MPLKIPQ8TAP9 179 aa9.86□□□□□ -0.83
COL9A3-210ENST00000472880 A0A1W2PPM0 123 aa9.85□□□□□ -0.83
COL9A3-210ENST00000472880 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.85□□□□□ -0.83
COL9A3-210ENST00000472880 PDE6GP18545 87 aa9.84□□□□□ -0.83
COL9A3-210ENST00000472880 SSPOA2VEC9 5147 aa9.83□□□□□ -0.84
COL9A3-210ENST00000472880 C14orf132Q9NPU4 83 aa9.83□□□□□ -0.84
COL9A3-210ENST00000472880 A0A1B0GW54 56 aa9.82□□□□□ -0.84
COL9A3-210ENST00000472880 C8orf87E5RJ46 101 aa9.82□□□□□ -0.84
COL9A3-210ENST00000472880 A0A1B0GVX0 72 aa9.8□□□□□ -0.84
COL9A3-210ENST00000472880 KRTAP9-7A8MTY7 169 aa9.8□□□□□ -0.84
COL9A3-210ENST00000472880 J3KT08 172 aa9.8□□□□□ -0.84
COL9A3-210ENST00000472880 H3BT86 120 aa9.79□□□□□ -0.84
COL9A3-210ENST00000472880 MT1FP04733 61 aa9.79□□□□□ -0.84
COL9A3-210ENST00000472880 MTURNQ8N3F0 131 aa9.77□□□□□ -0.85
COL9A3-210ENST00000472880 KRTAP10-10P60014 251 aa9.76□□□□□ -0.85
COL9A3-210ENST00000472880 ZCCHC13Q8WW36 166 aaKnown RBP9.74□□□□□ -0.85
COL9A3-210ENST00000472880 LCE2BO14633 110 aa9.72□□□□□ -0.85
COL9A3-210ENST00000472880 SPCS1Q9Y6A9 102 aa9.72□□□□□ -0.85
COL9A3-210ENST00000472880 NDUFB1O75438 58 aa9.71□□□□□ -0.86
COL9A3-210ENST00000472880 KRTAP9-3Q9BYQ3 159 aa9.71□□□□□ -0.86
COL9A3-210ENST00000472880 COL5A1-AS1Q5SY13 56 aa9.7□□□□□ -0.86
COL9A3-210ENST00000472880 A8MWP4 228 aa9.69□□□□□ -0.86
COL9A3-210ENST00000472880 SPINK7P58062 85 aa9.68□□□□□ -0.86
COL9A3-210ENST00000472880 NREPQ16612 68 aa9.68□□□□□ -0.86
COL9A3-210ENST00000472880 KRTAP19-1Q8IUB9 90 aa9.67□□□□□ -0.86
COL9A3-210ENST00000472880 FCGBPQ9Y6R7 5405 aaPredicted RBP9.65□□□□□ -0.86
COL9A3-210ENST00000472880 IGKV3D-7A0A0C4DH55 119 aa9.65□□□□□ -0.86
COL9A3-210ENST00000472880 C8orf17Q9NRJ1 99 aa9.64□□□□□ -0.87
COL9A3-210ENST00000472880 SMCPP49901 116 aaPredicted RBP9.63□□□□□ -0.87
COL9A3-210ENST00000472880 Q8N9P0 234 aaPredicted RBP9.62□□□□□ -0.87
COL9A3-210ENST00000472880 PRR15Q8IV56 129 aa9.6□□□□□ -0.87
COL9A3-210ENST00000472880 K7EP34 96 aa9.59□□□□□ -0.87
COL9A3-210ENST00000472880 WFDC13Q8IUB5 93 aa9.59□□□□□ -0.87
COL9A3-210ENST00000472880 PRO0461Q9UI25 63 aa9.57□□□□□ -0.88
COL9A3-210ENST00000472880 Q6ZVQ6 151 aa9.56□□□□□ -0.88
COL9A3-210ENST00000472880 PCP4L1A6NKN8 68 aa9.55□□□□□ -0.88
COL9A3-210ENST00000472880 MMP24-AS1A0A0U1RRL7 71 aa9.53□□□□□ -0.88
COL9A3-210ENST00000472880 K7EQZ3 153 aa9.53□□□□□ -0.88
COL9A3-210ENST00000472880 BPY2O14599 106 aa9.52□□□□□ -0.89
COL9A3-210ENST00000472880 LINC00846Q9NV44 126 aa9.52□□□□□ -0.89
COL9A3-210ENST00000472880 TMEM254Q8TBM7 123 aa9.5□□□□□ -0.89
COL9A3-210ENST00000472880 MRPL34Q9BQ48 92 aaKnown RBP9.49□□□□□ -0.89
COL9A3-210ENST00000472880 GTF2H5Q6ZYL4 71 aa9.48□□□□□ -0.89
COL9A3-210ENST00000472880 hDV103S1A0JD37 113 aa9.46□□□□□ -0.9
COL9A3-210ENST00000472880 KRTAP19-6Q3LI70 58 aa9.43□□□□□ -0.9
COL9A3-210ENST00000472880 F8W1H4 67 aa9.41□□□□□ -0.9
COL9A3-210ENST00000472880 Q8N9L7 120 aa9.41□□□□□ -0.9
COL9A3-210ENST00000472880 UBL5Q9BZL1 73 aa9.41□□□□□ -0.9
COL9A3-210ENST00000472880 MACF1Q9UPN3 7388 aaKnown RBP9.4□□□□□ -0.91
COL9A3-210ENST00000472880 NDUFS5O43920 106 aa9.39□□□□□ -0.91
COL9A3-210ENST00000472880 H1FX-AS1Q4G0G2 97 aa9.37□□□□□ -0.91
COL9A3-210ENST00000472880 ETDBQ3ZM63 59 aa9.35□□□□□ -0.91
COL9A3-210ENST00000472880 CASC2Q6XLA1 102 aa9.35□□□□□ -0.91
COL9A3-210ENST00000472880 IGKV2D-30A0A075B6S6 120 aa9.29□□□□□ -0.92
COL9A3-210ENST00000472880 HCG22E2RYF7 251 aa9.29□□□□□ -0.92
COL9A3-210ENST00000472880 IGKV2-30P06310 120 aa9.29□□□□□ -0.92
COL9A3-210ENST00000472880 Q5W150 140 aa9.28□□□□□ -0.92
COL9A3-210ENST00000472880 C7orf65Q6ZTY9 151 aa9.28□□□□□ -0.92
COL9A3-210ENST00000472880 SYNE2Q8WXH0 6885 aaKnown RBP9.26□□□□□ -0.93
COL9A3-210ENST00000472880 CXCL6P80162 114 aa9.22□□□□□ -0.93
COL9A3-210ENST00000472880 ACYP1P07311 99 aa9.14□□□□□ -0.95
COL9A3-210ENST00000472880 C4orf26Q17RF5 130 aa9.14□□□□□ -0.95
COL9A3-210ENST00000472880 KRTAP6-3Q3LI67 103 aa9.12□□□□□ -0.95
COL9A3-210ENST00000472880 FAM240AA0A1B0GVK7 77 aa9.11□□□□□ -0.95
COL9A3-210ENST00000472880 TP53AIP1Q9HCN2 124 aa9.09□□□□□ -0.95
COL9A3-210ENST00000472880 C5orf47Q569G3 176 aa9.07□□□□□ -0.96
COL9A3-210ENST00000472880 FAM236AA0A1B0GUQ0 79 aa9.06□□□□□ -0.96
COL9A3-210ENST00000472880 FAM236BA0A1B0GV22 79 aa9.06□□□□□ -0.96
COL9A3-210ENST00000472880 A0A1B0GV90 55 aa9.04□□□□□ -0.96
COL9A3-210ENST00000472880 ATP5EP2Q5VTU8 51 aa9.03□□□□□ -0.96
COL9A3-210ENST00000472880 S4R3F8 94 aa9.01□□□□□ -0.97
COL9A3-210ENST00000472880 HIST1H4AP62805 103 aaKnown RBP8.96□□□□□ -0.98
COL9A3-210ENST00000472880 A6NN06 94 aa8.95□□□□□ -0.98
COL9A3-210ENST00000472880 CSAG1Q6PB30 78 aa8.95□□□□□ -0.98
COL9A3-210ENST00000472880 KRTAP3-1Q9BYR8 98 aa8.95□□□□□ -0.98
COL9A3-210ENST00000472880 Q5VV11 94 aa8.94□□□□□ -0.98
COL9A3-210ENST00000472880 C1orf64Q8NEQ6 169 aa8.94□□□□□ -0.98
COL9A3-210ENST00000472880 LINC00643Q86TS7 51 aa8.92□□□□□ -0.98
COL9A3-210ENST00000472880 TRAV22A0A0B4J277 110 aa8.91□□□□□ -0.98
COL9A3-210ENST00000472880 MT1BP07438 61 aa8.91□□□□□ -0.98
COL9A3-210ENST00000472880 LCA10Q71F78 164 aa8.91□□□□□ -0.98
COL9A3-210ENST00000472880 SPRR2GQ9BYE4 73 aa8.88□□□□□ -0.99
COL9A3-210ENST00000472880 CYP4F30PQ9H0H9 118 aa8.88□□□□□ -0.99
COL9A3-210ENST00000472880 A0A087WVE0 104 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms