RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 USP34Q70CQ2 3546 aa7.88□□□□□ -1.15
NPHP3-ACAD11-201ENST00000471702 LINC00472Q9H8W2 130 aa7.86□□□□□ -1.15
NPHP3-ACAD11-201ENST00000471702 SPRR1BP22528 89 aa7.85□□□□□ -1.15
NPHP3-ACAD11-201ENST00000471702 A8MUU9 505 aa7.85□□□□□ -1.15
NPHP3-ACAD11-201ENST00000471702 TENM1Q9UKZ4 2725 aa7.8□□□□□ -1.16
NPHP3-ACAD11-201ENST00000471702 TNP1P09430 55 aa7.8□□□□□ -1.16
NPHP3-ACAD11-201ENST00000471702 SPTBN5Q9NRC6 3674 aaKnown RBP7.8□□□□□ -1.16
NPHP3-ACAD11-201ENST00000471702 NF1P21359 2839 aa7.79□□□□□ -1.16
NPHP3-ACAD11-201ENST00000471702 SPRR1AP35321 89 aa7.79□□□□□ -1.16
NPHP3-ACAD11-201ENST00000471702 DMXL1Q9Y485 3027 aa7.78□□□□□ -1.16
NPHP3-ACAD11-201ENST00000471702 A0A087X002 238 aa7.78□□□□□ -1.16
NPHP3-ACAD11-201ENST00000471702 MYO15AQ9UKN7 3530 aa7.76□□□□□ -1.17
NPHP3-ACAD11-201ENST00000471702 KRTAP26-1Q6PEX3 210 aa7.76□□□□□ -1.17
NPHP3-ACAD11-201ENST00000471702 Q6ZR54 194 aa7.75□□□□□ -1.17
NPHP3-ACAD11-201ENST00000471702 ASPMQ8IZT6 3477 aa7.75□□□□□ -1.17
NPHP3-ACAD11-201ENST00000471702 PANO1I0J062 215 aa7.74□□□□□ -1.17
NPHP3-ACAD11-201ENST00000471702 WDFY3Q8IZQ1 3526 aa7.73□□□□□ -1.17
NPHP3-ACAD11-201ENST00000471702 LOC400499M0QZD8 3231 aa7.73□□□□□ -1.17
NPHP3-ACAD11-201ENST00000471702 KRTAP10-8P60410 259 aa7.7□□□□□ -1.18
NPHP3-ACAD11-201ENST00000471702 CELSR1Q9NYQ6 3014 aa7.7□□□□□ -1.18
NPHP3-ACAD11-201ENST00000471702 NIPBLQ6KC79 2804 aaeCLIP7.69□□□□□ -1.18
NPHP3-ACAD11-201ENST00000471702 NDUFAF8A1L188 74 aa7.67□□□□□ -1.18
NPHP3-ACAD11-201ENST00000471702 DCHS2Q6V1P9 2916 aa7.66□□□□□ -1.18
NPHP3-ACAD11-201ENST00000471702 TENM4Q6N022 2769 aa7.66□□□□□ -1.18
NPHP3-ACAD11-201ENST00000471702 A8MU10 97 aa7.64□□□□□ -1.19
NPHP3-ACAD11-201ENST00000471702 NOTCH2NLQ7Z3S9 236 aa7.62□□□□□ -1.19
NPHP3-ACAD11-201ENST00000471702 TENM3Q9P273 2699 aa7.6□□□□□ -1.19
NPHP3-ACAD11-201ENST00000471702 PKD1L1Q8TDX9 2849 aa7.59□□□□□ -1.19
NPHP3-ACAD11-201ENST00000471702 ZFHX4Q86UP3 3567 aa7.58□□□□□ -1.2
NPHP3-ACAD11-201ENST00000471702 DCHS1Q96JQ0 3298 aa7.55□□□□□ -1.2
NPHP3-ACAD11-201ENST00000471702 VWFP04275 2813 aa7.52□□□□□ -1.21
NPHP3-ACAD11-201ENST00000471702 PDZD2O15018 2839 aa7.51□□□□□ -1.21
NPHP3-ACAD11-201ENST00000471702 A6NN06 94 aa7.49□□□□□ -1.21
NPHP3-ACAD11-201ENST00000471702 PRO2289Q9P1D8 64 aa7.49□□□□□ -1.21
NPHP3-ACAD11-201ENST00000471702 KRTAP25-1Q3LHN0 102 aa7.49□□□□□ -1.21
NPHP3-ACAD11-201ENST00000471702 KRTAP11-1Q8IUC1 163 aa7.47□□□□□ -1.21
NPHP3-ACAD11-201ENST00000471702 A0A1B0GVY2 172 aa7.47□□□□□ -1.21
NPHP3-ACAD11-201ENST00000471702 FBN2P35556 2912 aa7.43□□□□□ -1.22
NPHP3-ACAD11-201ENST00000471702 KRTAP4-16G5E9R7 235 aaPredicted RBP7.43□□□□□ -1.22
NPHP3-ACAD11-201ENST00000471702 ASB16-AS1Q495Z4 193 aa7.41□□□□□ -1.22
NPHP3-ACAD11-201ENST00000471702 NBPF19A0A087WUL8 3843 aa7.41□□□□□ -1.22
NPHP3-ACAD11-201ENST00000471702 KRTAP29-1A8MX34 341 aaPredicted RBP7.39□□□□□ -1.23
NPHP3-ACAD11-201ENST00000471702 ZANQ9Y493 2812 aa7.36□□□□□ -1.23
NPHP3-ACAD11-201ENST00000471702 LAMA5O15230 3695 aa7.36□□□□□ -1.23
NPHP3-ACAD11-201ENST00000471702 KRTAP10-10P60014 251 aa7.36□□□□□ -1.23
NPHP3-ACAD11-201ENST00000471702 KRTAP13-2Q52LG2 175 aa7.33□□□□□ -1.24
NPHP3-ACAD11-201ENST00000471702 PP632Q6XCG6 107 aa7.31□□□□□ -1.24
NPHP3-ACAD11-201ENST00000471702 SRRM2Q9UQ35 2752 aaKnown RBP7.3□□□□□ -1.24
NPHP3-ACAD11-201ENST00000471702 CSMD1Q96PZ7 3565 aa7.28□□□□□ -1.24
NPHP3-ACAD11-201ENST00000471702 Q6ZRN7 208 aaPredicted RBP7.26□□□□□ -1.25
NPHP3-ACAD11-201ENST00000471702 RPS29P62273 56 aaKnown RBP7.25□□□□□ -1.25
NPHP3-ACAD11-201ENST00000471702 ZFHX3Q15911 3703 aa7.25□□□□□ -1.25
NPHP3-ACAD11-201ENST00000471702 TGP01266 2768 aa7.24□□□□□ -1.25
NPHP3-ACAD11-201ENST00000471702 RELNP78509 3460 aa7.24□□□□□ -1.25
NPHP3-ACAD11-201ENST00000471702 CUBNO60494 3623 aa7.2□□□□□ -1.26
NPHP3-ACAD11-201ENST00000471702 KRTAP7-1Q8IUC3 87 aa7.18□□□□□ -1.26
NPHP3-ACAD11-201ENST00000471702 TENM2Q9NT68 2774 aa7.16□□□□□ -1.26
NPHP3-ACAD11-201ENST00000471702 XP32Q5T750 250 aa7.05□□□□□ -1.28
NPHP3-ACAD11-201ENST00000471702 KRTAP13-1Q8IUC0 172 aa7.05□□□□□ -1.28
NPHP3-ACAD11-201ENST00000471702 DMDP11532 3685 aa7.05□□□□□ -1.28
NPHP3-ACAD11-201ENST00000471702 COL7A1Q02388 2944 aa7.03□□□□□ -1.28
NPHP3-ACAD11-201ENST00000471702 MXRA5Q9NR99 2828 aa7.02□□□□□ -1.29
NPHP3-ACAD11-201ENST00000471702 SMG1Q96Q15 3661 aaKnown RBP7.02□□□□□ -1.29
NPHP3-ACAD11-201ENST00000471702 SPENQ96T58 3664 aaKnown RBP6.98□□□□□ -1.29
NPHP3-ACAD11-201ENST00000471702 CRCT1Q9UGL9 99 aa6.93□□□□□ -1.3
NPHP3-ACAD11-201ENST00000471702 MEGF8Q7Z7M0 2845 aa6.91□□□□□ -1.3
NPHP3-ACAD11-201ENST00000471702 HRNRQ86YZ3 2850 aaPredicted RBP6.89□□□□□ -1.31
NPHP3-ACAD11-201ENST00000471702 H0YAA0 97 aa6.88□□□□□ -1.31
NPHP3-ACAD11-201ENST00000471702 TPRXLQ17RH7 258 aa6.85□□□□□ -1.31
NPHP3-ACAD11-201ENST00000471702 FBN1P35555 2871 aaKnown RBP6.83□□□□□ -1.32
NPHP3-ACAD11-201ENST00000471702 KRTAP1-4P0C5Y4 121 aa6.83□□□□□ -1.32
NPHP3-ACAD11-201ENST00000471702 KRTAP21-3Q3LHN1 58 aa6.83□□□□□ -1.32
NPHP3-ACAD11-201ENST00000471702 SVEP1Q4LDE5 3571 aa6.83□□□□□ -1.32
NPHP3-ACAD11-201ENST00000471702 KRTAP12-2P59991 146 aa6.78□□□□□ -1.32
NPHP3-ACAD11-201ENST00000471702 MUC3AQ02505 3323 aa6.74□□□□□ -1.33
NPHP3-ACAD11-201ENST00000471702 KRTAP13-3Q3SY46 172 aa6.69□□□□□ -1.34
NPHP3-ACAD11-201ENST00000471702 KRTAP15-1Q3LI76 137 aa6.69□□□□□ -1.34
NPHP3-ACAD11-201ENST00000471702 FBN3Q75N90 2809 aa6.65□□□□□ -1.34
NPHP3-ACAD11-201ENST00000471702 CSMD2Q7Z408 3487 aa6.64□□□□□ -1.35
NPHP3-ACAD11-201ENST00000471702 TRRAPQ9Y4A5 3859 aa6.5□□□□□ -1.37
NPHP3-ACAD11-201ENST00000471702 OTOGQ6ZRI0 2925 aa6.5□□□□□ -1.37
NPHP3-ACAD11-201ENST00000471702 CSMD3Q7Z407 3707 aa6.49□□□□□ -1.37
NPHP3-ACAD11-201ENST00000471702 KRTAP10-6P60371 365 aaPredicted RBP6.41□□□□□ -1.38
NPHP3-ACAD11-201ENST00000471702 KRTAP13-4Q3LI77 160 aa6.4□□□□□ -1.38
NPHP3-ACAD11-201ENST00000471702 VPS13CQ709C8 3753 aa6.34□□□□□ -1.39
NPHP3-ACAD11-201ENST00000471702 KRTAP12-1P59990 96 aa6.32□□□□□ -1.4
NPHP3-ACAD11-201ENST00000471702 INE1O15225 51 aa6.2□□□□□ -1.42
NPHP3-ACAD11-201ENST00000471702 KRTAP10-12P60413 245 aa6.09□□□□□ -1.43
NPHP3-ACAD11-201ENST00000471702 KRTAP10-5P60370 271 aa6.08□□□□□ -1.44
NPHP3-ACAD11-201ENST00000471702 KRTAP3-1Q9BYR8 98 aa6.07□□□□□ -1.44
NPHP3-ACAD11-201ENST00000471702 KRTAP10-7P60409 375 aaPredicted RBP6.04□□□□□ -1.44
NPHP3-ACAD11-201ENST00000471702 LORP23490 312 aaPredicted RBP5.99□□□□□ -1.45
NPHP3-ACAD11-201ENST00000471702 BSNQ9UPA5 3926 aa5.98□□□□□ -1.45
NPHP3-ACAD11-201ENST00000471702 AKAP9Q99996 3911 aa5.89□□□□□ -1.47
NPHP3-ACAD11-201ENST00000471702 KRTAP4-5Q9BYR2 181 aa5.86□□□□□ -1.47
NPHP3-ACAD11-201ENST00000471702 KRTAP8-1Q8IUC2 63 aa5.84□□□□□ -1.47
NPHP3-ACAD11-201ENST00000471702 KRTAP12-3P60328 96 aa5.82□□□□□ -1.48
NPHP3-ACAD11-201ENST00000471702 ZNF469Q96JG9 3925 aaPredicted RBP5.78□□□□□ -1.48
NPHP3-ACAD11-201ENST00000471702 MT1HL1P0DM35 61 aa5.77□□□□□ -1.49
NPHP3-ACAD11-201ENST00000471702 LCE3AQ5TA76 89 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms