RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 C8orf87E5RJ46 101 aa8.68□□□□□ -1.02
COL7A1-208ENST00000470076 A0A1B0GVX0 72 aa8.66□□□□□ -1.02
COL7A1-208ENST00000470076 MT1FP04733 61 aa8.66□□□□□ -1.02
COL7A1-208ENST00000470076 VPS25Q9BRG1 176 aa8.65□□□□□ -1.02
COL7A1-208ENST00000470076 MTURNQ8N3F0 131 aa8.64□□□□□ -1.03
COL7A1-208ENST00000470076 SMIM6P0DI80 62 aa8.63□□□□□ -1.03
COL7A1-208ENST00000470076 KRTAP10-10P60014 251 aa8.63□□□□□ -1.03
COL7A1-208ENST00000470076 RBM3P98179 157 aaKnown RBP8.63□□□□□ -1.03
COL7A1-208ENST00000470076 DSCR8Q96T75 97 aa8.62□□□□□ -1.03
COL7A1-208ENST00000470076 LCE2BO14633 110 aa8.61□□□□□ -1.03
COL7A1-208ENST00000470076 C21orf62-AS1Q17RA5 79 aa8.61□□□□□ -1.03
COL7A1-208ENST00000470076 KRTAP9-3Q9BYQ3 159 aa8.61□□□□□ -1.03
COL7A1-208ENST00000470076 FCGBPQ9Y6R7 5405 aaPredicted RBP8.6□□□□□ -1.03
COL7A1-208ENST00000470076 J3KT08 172 aa8.6□□□□□ -1.03
COL7A1-208ENST00000470076 ZCCHC13Q8WW36 166 aaKnown RBP8.6□□□□□ -1.03
COL7A1-208ENST00000470076 SCGB1C2P0DMR2 95 aa8.58□□□□□ -1.04
COL7A1-208ENST00000470076 UQCR10Q9UDW1 63 aa8.58□□□□□ -1.04
COL7A1-208ENST00000470076 C9JAW5 83 aa8.56□□□□□ -1.04
COL7A1-208ENST00000470076 SPINK7P58062 85 aa8.56□□□□□ -1.04
COL7A1-208ENST00000470076 KRTAP19-1Q8IUB9 90 aa8.56□□□□□ -1.04
COL7A1-208ENST00000470076 Q6ZQT0 140 aa8.54□□□□□ -1.04
COL7A1-208ENST00000470076 NDUFB1O75438 58 aa8.53□□□□□ -1.04
COL7A1-208ENST00000470076 BAALC-AS2P0C853 105 aa8.53□□□□□ -1.04
COL7A1-208ENST00000470076 Q8N9P0 234 aaPredicted RBP8.53□□□□□ -1.04
COL7A1-208ENST00000470076 A0A1B0GW54 56 aa8.47□□□□□ -1.05
COL7A1-208ENST00000470076 A8MWP4 228 aa8.46□□□□□ -1.06
COL7A1-208ENST00000470076 LYRM7Q5U5X0 104 aa8.46□□□□□ -1.06
COL7A1-208ENST00000470076 C8orf17Q9NRJ1 99 aa8.46□□□□□ -1.06
COL7A1-208ENST00000470076 JMJD7-PLA2G4BH0Y9G9 81 aa8.45□□□□□ -1.06
COL7A1-208ENST00000470076 WFDC13Q8IUB5 93 aa8.45□□□□□ -1.06
COL7A1-208ENST00000470076 LINC00846Q9NV44 126 aa8.43□□□□□ -1.06
COL7A1-208ENST00000470076 LOC110117498A0A087WWA1 95 aa8.42□□□□□ -1.06
COL7A1-208ENST00000470076 TSTD3H0UI37 97 aa8.42□□□□□ -1.06
COL7A1-208ENST00000470076 IGKV3D-7A0A0C4DH55 119 aa8.41□□□□□ -1.06
COL7A1-208ENST00000470076 PDE6GP18545 87 aa8.41□□□□□ -1.06
COL7A1-208ENST00000470076 ATXN8Q156A1 80 aa8.41□□□□□ -1.06
COL7A1-208ENST00000470076 Q6ZVQ6 151 aa8.4□□□□□ -1.06
COL7A1-208ENST00000470076 KRTAP19-6Q3LI70 58 aa8.37□□□□□ -1.07
COL7A1-208ENST00000470076 MACF1Q9UPN3 7388 aaKnown RBP8.36□□□□□ -1.07
COL7A1-208ENST00000470076 PRR15Q8IV56 129 aa8.36□□□□□ -1.07
COL7A1-208ENST00000470076 M0R143 59 aa8.35□□□□□ -1.07
COL7A1-208ENST00000470076 NAA38Q9BRA0 125 aaKnown RBP8.34□□□□□ -1.07
COL7A1-208ENST00000470076 C14orf132Q9NPU4 83 aa8.34□□□□□ -1.07
COL7A1-208ENST00000470076 NREPQ16612 68 aa8.33□□□□□ -1.08
COL7A1-208ENST00000470076 TMEM254Q8TBM7 123 aa8.32□□□□□ -1.08
COL7A1-208ENST00000470076 MRPL34Q9BQ48 92 aaKnown RBP8.32□□□□□ -1.08
COL7A1-208ENST00000470076 SYNE2Q8WXH0 6885 aaKnown RBP8.3□□□□□ -1.08
COL7A1-208ENST00000470076 MMP24-AS1A0A0U1RRL7 71 aa8.3□□□□□ -1.08
COL7A1-208ENST00000470076 H1FX-AS1Q4G0G2 97 aa8.29□□□□□ -1.08
COL7A1-208ENST00000470076 hDV103S1A0JD37 113 aa8.26□□□□□ -1.09
COL7A1-208ENST00000470076 NDUFS5O43920 106 aa8.24□□□□□ -1.09
COL7A1-208ENST00000470076 BATFQ16520 125 aa8.24□□□□□ -1.09
COL7A1-208ENST00000470076 K7EQZ3 153 aa8.23□□□□□ -1.09
COL7A1-208ENST00000470076 IGKV2D-30A0A075B6S6 120 aa8.19□□□□□ -1.1
COL7A1-208ENST00000470076 TAX1BP3O14907 124 aa8.19□□□□□ -1.1
COL7A1-208ENST00000470076 IGKV2-30P06310 120 aa8.19□□□□□ -1.1
COL7A1-208ENST00000470076 C7orf65Q6ZTY9 151 aa8.18□□□□□ -1.1
COL7A1-208ENST00000470076 C9orf118A6NHY6 69 aa8.16□□□□□ -1.1
COL7A1-208ENST00000470076 H3BT86 120 aa8.15□□□□□ -1.1
COL7A1-208ENST00000470076 BPY2O14599 106 aa8.15□□□□□ -1.1
COL7A1-208ENST00000470076 PCP4L1A6NKN8 68 aa8.14□□□□□ -1.11
COL7A1-208ENST00000470076 Q5W150 140 aa8.14□□□□□ -1.11
COL7A1-208ENST00000470076 COL5A1-AS1Q5SY13 56 aa8.11□□□□□ -1.11
COL7A1-208ENST00000470076 A0A1W2PPM0 123 aa8.1□□□□□ -1.11
COL7A1-208ENST00000470076 KRTAP6-3Q3LI67 103 aa8.1□□□□□ -1.11
COL7A1-208ENST00000470076 CASC2Q6XLA1 102 aa8.09□□□□□ -1.11
COL7A1-208ENST00000470076 HCG22E2RYF7 251 aa8.07□□□□□ -1.12
COL7A1-208ENST00000470076 C4orf26Q17RF5 130 aa8.07□□□□□ -1.12
COL7A1-208ENST00000470076 Q8N9L7 120 aa8.06□□□□□ -1.12
COL7A1-208ENST00000470076 CXCL6P80162 114 aa8.04□□□□□ -1.12
COL7A1-208ENST00000470076 C5orf47Q569G3 176 aa7.99□□□□□ -1.13
COL7A1-208ENST00000470076 SPCS1Q9Y6A9 102 aa7.99□□□□□ -1.13
COL7A1-208ENST00000470076 FAM236AA0A1B0GUQ0 79 aa7.97□□□□□ -1.13
COL7A1-208ENST00000470076 FAM236BA0A1B0GV22 79 aa7.97□□□□□ -1.13
COL7A1-208ENST00000470076 K7EP34 96 aa7.95□□□□□ -1.14
COL7A1-208ENST00000470076 SMCPP49901 116 aaPredicted RBP7.93□□□□□ -1.14
COL7A1-208ENST00000470076 KRTAP3-1Q9BYR8 98 aa7.93□□□□□ -1.14
COL7A1-208ENST00000470076 PRO0461Q9UI25 63 aa7.93□□□□□ -1.14
COL7A1-208ENST00000470076 S4R3F8 94 aa7.93□□□□□ -1.14
COL7A1-208ENST00000470076 CSAG1Q6PB30 78 aa7.92□□□□□ -1.14
COL7A1-208ENST00000470076 UBL5Q9BZL1 73 aa7.92□□□□□ -1.14
COL7A1-208ENST00000470076 A6NN06 94 aa7.91□□□□□ -1.14
COL7A1-208ENST00000470076 MT1BP07438 61 aa7.89□□□□□ -1.15
COL7A1-208ENST00000470076 Q5VV11 94 aa7.89□□□□□ -1.15
COL7A1-208ENST00000470076 C1orf64Q8NEQ6 169 aa7.89□□□□□ -1.15
COL7A1-208ENST00000470076 SPRR2GQ9BYE4 73 aa7.88□□□□□ -1.15
COL7A1-208ENST00000470076 GTF2H5Q6ZYL4 71 aa7.87□□□□□ -1.15
COL7A1-208ENST00000470076 LCA10Q71F78 164 aa7.87□□□□□ -1.15
COL7A1-208ENST00000470076 KRTAP19-8Q3LI54 63 aa7.86□□□□□ -1.15
COL7A1-208ENST00000470076 TP53AIP1Q9HCN2 124 aa7.83□□□□□ -1.16
COL7A1-208ENST00000470076 NEBP20929 6669 aa7.83□□□□□ -1.16
COL7A1-208ENST00000470076 F8W1H4 67 aa7.8□□□□□ -1.16
COL7A1-208ENST00000470076 KLKP1Q107X0 134 aa7.79□□□□□ -1.16
COL7A1-208ENST00000470076 KRTAP10-5P60370 271 aa7.77□□□□□ -1.17
COL7A1-208ENST00000470076 MUC12Q9UKN1 5478 aa7.76□□□□□ -1.17
COL7A1-208ENST00000470076 A0A1B0GV90 55 aa7.75□□□□□ -1.17
COL7A1-208ENST00000470076 ETDBQ3ZM63 59 aa7.73□□□□□ -1.17
COL7A1-208ENST00000470076 KRTAP3-3Q9BYR6 98 aa7.73□□□□□ -1.17
COL7A1-208ENST00000470076 CYP4F30PQ9H0H9 118 aa7.7□□□□□ -1.18
COL7A1-208ENST00000470076 CRIPTQ9P021 101 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms