RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 VPS13BQ7Z7G8 4022 aa11.24□□□□□ -0.61
VIM-203ENST00000469543 KRTAP10-1P60331 282 aa11.23□□□□□ -0.61
VIM-203ENST00000469543 A0A1B0GVX0 72 aa11.23□□□□□ -0.61
VIM-203ENST00000469543 ASB16-AS1Q495Z4 193 aa11.21□□□□□ -0.61
VIM-203ENST00000469543 PCOTHQ58A44 107 aa11.21□□□□□ -0.61
VIM-203ENST00000469543 CDK2AP2O75956 126 aa11.19□□□□□ -0.62
VIM-203ENST00000469543 CYP4F30PQ9H0H9 118 aa11.17□□□□□ -0.62
VIM-203ENST00000469543 MRPL34Q9BQ48 92 aaKnown RBP11.12□□□□□ -0.63
VIM-203ENST00000469543 KRTAP13-2Q52LG2 175 aa11.12□□□□□ -0.63
VIM-203ENST00000469543 PSPHP1O15172 72 aa11.11□□□□□ -0.63
VIM-203ENST00000469543 CD164Q04900 197 aa11.11□□□□□ -0.63
VIM-203ENST00000469543 BRK1Q8WUW1 75 aa11.11□□□□□ -0.63
VIM-203ENST00000469543 H3BPC8 53 aa11.1□□□□□ -0.63
VIM-203ENST00000469543 Q5W150 140 aa11.1□□□□□ -0.63
VIM-203ENST00000469543 Q6ZSA8 131 aa11.08□□□□□ -0.64
VIM-203ENST00000469543 TP53AIP1Q9HCN2 124 aa11.07□□□□□ -0.64
VIM-203ENST00000469543 SPANXA2-OT1Q8N9U9 137 aa11.06□□□□□ -0.64
VIM-203ENST00000469543 SSBP3-AS1Q7Z2R9 100 aa11.04□□□□□ -0.64
VIM-203ENST00000469543 PRO0628Q9UI54 55 aa11.03□□□□□ -0.64
VIM-203ENST00000469543 SACSQ9NZJ4 4579 aa11.03□□□□□ -0.64
VIM-203ENST00000469543 RETNLBQ9BQ08 111 aa11.02□□□□□ -0.65
VIM-203ENST00000469543 Q1T7F1 81 aa11.02□□□□□ -0.65
VIM-203ENST00000469543 IGLV7-46A0A075B6I9 117 aa11.01□□□□□ -0.65
VIM-203ENST00000469543 KRTAP1-4P0C5Y4 121 aa11□□□□□ -0.65
VIM-203ENST00000469543 A8MUN3 132 aa10.98□□□□□ -0.65
VIM-203ENST00000469543 Q8N9P0 234 aaPredicted RBP10.98□□□□□ -0.65
VIM-203ENST00000469543 C1orf195Q5TG92 126 aa10.97□□□□□ -0.65
VIM-203ENST00000469543 COA5Q86WW8 74 aa10.97□□□□□ -0.65
VIM-203ENST00000469543 FAT1Q14517 4588 aa10.95□□□□□ -0.66
VIM-203ENST00000469543 PLA2G1BP04054 148 aaKnown RBP10.93□□□□□ -0.66
VIM-203ENST00000469543 KRTAP13-3Q3SY46 172 aa10.92□□□□□ -0.66
VIM-203ENST00000469543 LINC00313P59037 77 aa10.92□□□□□ -0.66
VIM-203ENST00000469543 SMR3BP02814 79 aaPredicted RBP10.91□□□□□ -0.66
VIM-203ENST00000469543 A8MU10 97 aa10.89□□□□□ -0.67
VIM-203ENST00000469543 DYNC1H1Q14204 4646 aaKnown RBP10.88□□□□□ -0.67
VIM-203ENST00000469543 HRES1P13985 223 aa10.86□□□□□ -0.67
VIM-203ENST00000469543 Q5VV11 94 aa10.84□□□□□ -0.67
VIM-203ENST00000469543 SPAG11AQ6PDA7 123 aa10.84□□□□□ -0.67
VIM-203ENST00000469543 KMT2CQ8NEZ4 4911 aaKnown RBP10.83□□□□□ -0.68
VIM-203ENST00000469543 TYMSOSQ8TAI1 123 aa10.82□□□□□ -0.68
VIM-203ENST00000469543 PRR15LQ9BU68 103 aa10.82□□□□□ -0.68
VIM-203ENST00000469543 LOC101927531A0A1B0GV80 90 aa10.81□□□□□ -0.68
VIM-203ENST00000469543 PRR26Q8N8Z3 221 aa10.81□□□□□ -0.68
VIM-203ENST00000469543 C8orf87E5RJ46 101 aa10.81□□□□□ -0.68
VIM-203ENST00000469543 KRTAP16-1A8MUX0 517 aa10.79□□□□□ -0.68
VIM-203ENST00000469543 C4orf48Q5BLP8 95 aa10.77□□□□□ -0.69
VIM-203ENST00000469543 CHKB-CPT1BH3BT56 60 aa10.76□□□□□ -0.69
VIM-203ENST00000469543 V9GYY9 64 aa10.75□□□□□ -0.69
VIM-203ENST00000469543 LIMD2Q9BT23 127 aa10.73□□□□□ -0.69
VIM-203ENST00000469543 APOBP04114 4563 aaKnown RBP10.71□□□□□ -0.69
VIM-203ENST00000469543 FAM229AH3BQW9 127 aa10.71□□□□□ -0.69
VIM-203ENST00000469543 IGKV2D-30A0A075B6S6 120 aa10.69□□□□□ -0.7
VIM-203ENST00000469543 IGKV2-30P06310 120 aa10.69□□□□□ -0.7
VIM-203ENST00000469543 KRTAP21-3Q3LHN1 58 aa10.69□□□□□ -0.7
VIM-203ENST00000469543 SPINK1P00995 79 aa10.67□□□□□ -0.7
VIM-203ENST00000469543 RYR2Q92736 4967 aa10.65□□□□□ -0.7
VIM-203ENST00000469543 LINC00304Q8N9R0 145 aa10.64□□□□□ -0.71
VIM-203ENST00000469543 A0A1B0GVY2 172 aa10.61□□□□□ -0.71
VIM-203ENST00000469543 LCA10Q71F78 164 aa10.61□□□□□ -0.71
VIM-203ENST00000469543 A6NED7 52 aa10.6□□□□□ -0.71
VIM-203ENST00000469543 ACYP2P14621 99 aa10.6□□□□□ -0.71
VIM-203ENST00000469543 LINC01558Q9Y6Z2 57 aa10.6□□□□□ -0.71
VIM-203ENST00000469543 DMAC1Q96GE9 116 aa10.58□□□□□ -0.72
VIM-203ENST00000469543 C9orf92A6NGG3 77 aa10.58□□□□□ -0.72
VIM-203ENST00000469543 Q75L30 129 aa10.58□□□□□ -0.72
VIM-203ENST00000469543 LRP1Q07954 4544 aaKnown RBP10.57□□□□□ -0.72
VIM-203ENST00000469543 KRTAP10-4P60372 401 aaPredicted RBP10.57□□□□□ -0.72
VIM-203ENST00000469543 SPINK7P58062 85 aa10.55□□□□□ -0.72
VIM-203ENST00000469543 SPTSSBQ8NFR3 76 aa10.52□□□□□ -0.73
VIM-203ENST00000469543 PKHD1L1Q86WI1 4243 aa10.51□□□□□ -0.73
VIM-203ENST00000469543 Q8N1X5 172 aa10.47□□□□□ -0.73
VIM-203ENST00000469543 C7orf65Q6ZTY9 151 aa10.46□□□□□ -0.74
VIM-203ENST00000469543 RYR3Q15413 4870 aa10.44□□□□□ -0.74
VIM-203ENST00000469543 PMAIP1Q13794 54 aa10.44□□□□□ -0.74
VIM-203ENST00000469543 FLG2Q5D862 2391 aaPredicted RBP10.44□□□□□ -0.74
VIM-203ENST00000469543 DMBT1Q9UGM3 2413 aaPredicted RBP10.42□□□□□ -0.74
VIM-203ENST00000469543 SEC61GP60059 68 aa10.41□□□□□ -0.74
VIM-203ENST00000469543 MYCBP2O75592 4640 aa10.39□□□□□ -0.75
VIM-203ENST00000469543 RPS29P62273 56 aaKnown RBP10.39□□□□□ -0.75
VIM-203ENST00000469543 CDC42SE1Q9NRR8 79 aa10.37□□□□□ -0.75
VIM-203ENST00000469543 HSPG2P98160 4391 aa10.33□□□□□ -0.76
VIM-203ENST00000469543 A0A1B0GU69 56 aa10.33□□□□□ -0.76
VIM-203ENST00000469543 TNXBP22105 4242 aa10.3□□□□□ -0.76
VIM-203ENST00000469543 ATP11AUNQ6ZP68 121 aa10.3□□□□□ -0.76
VIM-203ENST00000469543 C20orf166-AS1Q96NR2 134 aa10.28□□□□□ -0.76
VIM-203ENST00000469543 A8MUU9 505 aa10.28□□□□□ -0.76
VIM-203ENST00000469543 FAT3Q8TDW7 4589 aa10.27□□□□□ -0.76
VIM-203ENST00000469543 KRTAP17-1Q9BYP8 105 aa10.27□□□□□ -0.77
VIM-203ENST00000469543 KIAA1109Q2LD37 5005 aa10.26□□□□□ -0.77
VIM-203ENST00000469543 KRTAP3-1Q9BYR8 98 aa10.23□□□□□ -0.77
VIM-203ENST00000469543 A6NN06 94 aa10.2□□□□□ -0.78
VIM-203ENST00000469543 Q5VSD8 79 aa10.18□□□□□ -0.78
VIM-203ENST00000469543 RYR1P21817 5038 aa10.15□□□□□ -0.78
VIM-203ENST00000469543 KRTAP10-8P60410 259 aa10.11□□□□□ -0.79
VIM-203ENST00000469543 KTN1-AS1Q86SY8 53 aa10.1□□□□□ -0.79
VIM-203ENST00000469543 EPPK1P58107 5090 aaKnown RBP10.09□□□□□ -0.79
VIM-203ENST00000469543 MIR22HGQ0VDD5 57 aa10.08□□□□□ -0.8
VIM-203ENST00000469543 UQCR11O14957 56 aa10.07□□□□□ -0.8
VIM-203ENST00000469543 SPATA8Q6RVD6 105 aa10.06□□□□□ -0.8
VIM-203ENST00000469543 LPAP08519 4548 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms