RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 YPEL4Q96NS1 127 aa2.34□□□□□ -2.03
PTPN4-209ENST00000469511 SIGMAR1Q99720 223 aa2.34□□□□□ -2.03
PTPN4-209ENST00000469511 hADV29S1A0JD25 119 aa2.33□□□□□ -2.04
PTPN4-209ENST00000469511 IGKV4-1P06312 121 aa2.33□□□□□ -2.04
PTPN4-209ENST00000469511 SPRR2DP22532 72 aa2.33□□□□□ -2.04
PTPN4-209ENST00000469511 NHP2Q9NX24 153 aaKnown RBP2.33□□□□□ -2.04
PTPN4-209ENST00000469511 SNAPINO95295 136 aa2.32□□□□□ -2.04
PTPN4-209ENST00000469511 CLLU1Q5K131 121 aa2.32□□□□□ -2.04
PTPN4-209ENST00000469511 KRTAP5-11Q6L8G4 156 aa2.32□□□□□ -2.04
PTPN4-209ENST00000469511 TEN1Q86WV5 123 aa2.32□□□□□ -2.04
PTPN4-209ENST00000469511 ZCCHC13Q8WW36 166 aaKnown RBP2.32□□□□□ -2.04
PTPN4-209ENST00000469511 SS18L2Q9UHA2 77 aa2.32□□□□□ -2.04
PTPN4-209ENST00000469511 IGHV6-1A0A0B4J1U7 121 aa2.31□□□□□ -2.04
PTPN4-209ENST00000469511 UQCC3Q6UW78 93 aa2.31□□□□□ -2.04
PTPN4-209ENST00000469511 HIST1H4GQ99525 98 aa2.31□□□□□ -2.04
PTPN4-209ENST00000469511 SNHG12Q9BXW3 62 aa2.31□□□□□ -2.04
PTPN4-209ENST00000469511 PCP4L1A6NKN8 68 aa2.3□□□□□ -2.04
PTPN4-209ENST00000469511 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.3□□□□□ -2.04
PTPN4-209ENST00000469511 SPRR2GQ9BYE4 73 aa2.3□□□□□ -2.04
PTPN4-209ENST00000469511 TRGC2P03986 189 aa2.29□□□□□ -2.04
PTPN4-209ENST00000469511 H1FX-AS1Q4G0G2 97 aa2.29□□□□□ -2.04
PTPN4-209ENST00000469511 LINC00472Q9H8W2 130 aa2.29□□□□□ -2.04
PTPN4-209ENST00000469511 SYS1-DBNDD2H3BUS1 97 aa2.28□□□□□ -2.04
PTPN4-209ENST00000469511 IFITM1P13164 125 aa2.28□□□□□ -2.04
PTPN4-209ENST00000469511 VAMP3Q15836 100 aa2.28□□□□□ -2.04
PTPN4-209ENST00000469511 SCGB1D4Q6XE38 83 aa2.28□□□□□ -2.04
PTPN4-209ENST00000469511 LINC01545Q5VT33 79 aa2.27□□□□□ -2.05
PTPN4-209ENST00000469511 FAM236AA0A1B0GUQ0 79 aa2.26□□□□□ -2.05
PTPN4-209ENST00000469511 FAM236BA0A1B0GV22 79 aa2.26□□□□□ -2.05
PTPN4-209ENST00000469511 H3BMG7 143 aa2.26□□□□□ -2.05
PTPN4-209ENST00000469511 APOC3P02656 99 aa2.26□□□□□ -2.05
PTPN4-209ENST00000469511 KRTAP8-1Q8IUC2 63 aa2.26□□□□□ -2.05
PTPN4-209ENST00000469511 PPDPFLQ8WWR9 84 aa2.26□□□□□ -2.05
PTPN4-209ENST00000469511 A0A1B0GV72 72 aa2.25□□□□□ -2.05
PTPN4-209ENST00000469511 A0A1B0GVX0 72 aa2.25□□□□□ -2.05
PTPN4-209ENST00000469511 C3orf79P0CE67 100 aa2.25□□□□□ -2.05
PTPN4-209ENST00000469511 SEC61GP60059 68 aa2.25□□□□□ -2.05
PTPN4-209ENST00000469511 C5orf47Q569G3 176 aa2.25□□□□□ -2.05
PTPN4-209ENST00000469511 C12orf57Q99622 126 aa2.25□□□□□ -2.05
PTPN4-209ENST00000469511 IMUPQ9GZP8 106 aa2.25□□□□□ -2.05
PTPN4-209ENST00000469511 ATOH7Q8N100 152 aa2.24□□□□□ -2.05
PTPN4-209ENST00000469511 KRTAP9-6A8MVA2 160 aa2.23□□□□□ -2.05
PTPN4-209ENST00000469511 C8orf87E5RJ46 101 aa2.23□□□□□ -2.05
PTPN4-209ENST00000469511 RBM3P98179 157 aaKnown RBP2.23□□□□□ -2.05
PTPN4-209ENST00000469511 COPS9Q8WXC6 57 aa2.22□□□□□ -2.05
PTPN4-209ENST00000469511 RAB37Q96AX2 223 aa2.22□□□□□ -2.05
PTPN4-209ENST00000469511 FABP2P12104 132 aa2.21□□□□□ -2.06
PTPN4-209ENST00000469511 MT1XP80297 61 aa2.21□□□□□ -2.06
PTPN4-209ENST00000469511 DSTQ03001 7570 aaKnown RBP2.21□□□□□ -2.06
PTPN4-209ENST00000469511 IGKV3D-7A0A0C4DH55 119 aa2.2□□□□□ -2.06
PTPN4-209ENST00000469511 TRBV7-4A0A0J9YYF1 115 aa2.2□□□□□ -2.06
PTPN4-209ENST00000469511 BVES-AS1Q5T3Y7 98 aa2.2□□□□□ -2.06
PTPN4-209ENST00000469511 LCE3EQ5T5B0 92 aa2.2□□□□□ -2.06
PTPN4-209ENST00000469511 LYRM7Q5U5X0 104 aa2.2□□□□□ -2.06
PTPN4-209ENST00000469511 SVBPQ8N300 66 aa2.2□□□□□ -2.06
PTPN4-209ENST00000469511 ANKRD29Q8N6D5 301 aa2.2□□□□□ -2.06
PTPN4-209ENST00000469511 KRTDAPP60985 99 aa2.19□□□□□ -2.06
PTPN4-209ENST00000469511 KLKP1Q107X0 134 aa2.19□□□□□ -2.06
PTPN4-209ENST00000469511 HMCN1Q96RW7 5635 aa2.19□□□□□ -2.06
PTPN4-209ENST00000469511 CCKP06307 115 aa2.18□□□□□ -2.06
PTPN4-209ENST00000469511 C4orf26Q17RF5 130 aa2.18□□□□□ -2.06
PTPN4-209ENST00000469511 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.18□□□□□ -2.06
PTPN4-209ENST00000469511 C8orf17Q9NRJ1 99 aa2.18□□□□□ -2.06
PTPN4-209ENST00000469511 HIST1H2BKO60814 126 aa2.17□□□□□ -2.06
PTPN4-209ENST00000469511 TRACP01848 142 aa2.17□□□□□ -2.06
PTPN4-209ENST00000469511 HIST1H2BJP06899 126 aa2.17□□□□□ -2.06
PTPN4-209ENST00000469511 HIST1H2BOP23527 126 aa2.17□□□□□ -2.06
PTPN4-209ENST00000469511 HIST1H2BBP33778 126 aa2.17□□□□□ -2.06
PTPN4-209ENST00000469511 HIST1H2BDP58876 126 aa2.17□□□□□ -2.06
PTPN4-209ENST00000469511 HIST1H2BCP62807 126 aa2.17□□□□□ -2.06
PTPN4-209ENST00000469511 HIST2H2BEQ16778 126 aa2.17□□□□□ -2.06
PTPN4-209ENST00000469511 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.17□□□□□ -2.06
PTPN4-209ENST00000469511 Q5W150 140 aa2.17□□□□□ -2.06
PTPN4-209ENST00000469511 CAMK2N1Q7Z7J9 78 aa2.17□□□□□ -2.06
PTPN4-209ENST00000469511 HIST1H2BHQ93079 126 aa2.17□□□□□ -2.06
PTPN4-209ENST00000469511 HIST1H2BNQ99877 126 aa2.17□□□□□ -2.06
PTPN4-209ENST00000469511 HIST1H2BMQ99879 126 aa2.17□□□□□ -2.06
PTPN4-209ENST00000469511 KRTAP12-2P59991 146 aa2.16□□□□□ -2.06
PTPN4-209ENST00000469511 LCA10Q71F78 164 aa2.16□□□□□ -2.06
PTPN4-209ENST00000469511 NDUFA5Q16718 116 aa2.15□□□□□ -2.07
PTPN4-209ENST00000469511 VPS25Q9BRG1 176 aa2.15□□□□□ -2.07
PTPN4-209ENST00000469511 AHNAK2Q8IVF2 5795 aa2.15□□□□□ -2.07
PTPN4-209ENST00000469511 H0YGX0 51 aa2.14□□□□□ -2.07
PTPN4-209ENST00000469511 COA6Q5JTJ3 125 aaKnown RBP2.14□□□□□ -2.07
PTPN4-209ENST00000469511 KRTAP5-10Q6L8G5 202 aa2.14□□□□□ -2.07
PTPN4-209ENST00000469511 Q8N9L7 120 aa2.14□□□□□ -2.07
PTPN4-209ENST00000469511 CSAG1Q6PB30 78 aa2.13□□□□□ -2.07
PTPN4-209ENST00000469511 S4R3F8 94 aa2.13□□□□□ -2.07
PTPN4-209ENST00000469511 MMP24-AS1A0A0U1RRL7 71 aa2.12□□□□□ -2.07
PTPN4-209ENST00000469511 DSCR8Q96T75 97 aa2.12□□□□□ -2.07
PTPN4-209ENST00000469511 A0A087WVE0 104 aa2.11□□□□□ -2.07
PTPN4-209ENST00000469511 J3KT08 172 aa2.11□□□□□ -2.07
PTPN4-209ENST00000469511 NDUFB1O75438 58 aa2.11□□□□□ -2.07
PTPN4-209ENST00000469511 Q6ZQT0 140 aa2.11□□□□□ -2.07
PTPN4-209ENST00000469511 C7orf65Q6ZTY9 151 aa2.11□□□□□ -2.07
PTPN4-209ENST00000469511 C2orf91Q6ZV80 131 aa2.11□□□□□ -2.07
PTPN4-209ENST00000469511 MRPL34Q9BQ48 92 aaKnown RBP2.11□□□□□ -2.07
PTPN4-209ENST00000469511 A0A1B0GX51 115 aa2.1□□□□□ -2.07
PTPN4-209ENST00000469511 NDUFS5O43920 106 aa2.1□□□□□ -2.07
PTPN4-209ENST00000469511 SNCGO76070 127 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms