RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 RBM12B-AS1Q9P1G2 102 aa8.3□□□□□ -1.08
CCDC28B-204ENST00000469003 FCGBPQ9Y6R7 5405 aaPredicted RBP8.28□□□□□ -1.08
CCDC28B-204ENST00000469003 C8orf87E5RJ46 101 aa8.27□□□□□ -1.09
CCDC28B-204ENST00000469003 VPS25Q9BRG1 176 aa8.27□□□□□ -1.09
CCDC28B-204ENST00000469003 UQCR10Q9UDW1 63 aa8.27□□□□□ -1.09
CCDC28B-204ENST00000469003 A0A1B0GVX0 72 aa8.26□□□□□ -1.09
CCDC28B-204ENST00000469003 RBM3P98179 157 aaKnown RBP8.26□□□□□ -1.09
CCDC28B-204ENST00000469003 MT2AP02795 61 aa8.25□□□□□ -1.09
CCDC28B-204ENST00000469003 SCGB1C2P0DMR2 95 aa8.25□□□□□ -1.09
CCDC28B-204ENST00000469003 SYNE2Q8WXH0 6885 aaKnown RBP8.25□□□□□ -1.09
CCDC28B-204ENST00000469003 DSCR8Q96T75 97 aa8.24□□□□□ -1.09
CCDC28B-204ENST00000469003 C21orf62-AS1Q17RA5 79 aa8.22□□□□□ -1.09
CCDC28B-204ENST00000469003 J3KT08 172 aa8.21□□□□□ -1.1
CCDC28B-204ENST00000469003 MACF1Q9UPN3 7388 aaKnown RBP8.2□□□□□ -1.1
CCDC28B-204ENST00000469003 C9JAW5 83 aa8.19□□□□□ -1.1
CCDC28B-204ENST00000469003 MT1FP04733 61 aa8.19□□□□□ -1.1
CCDC28B-204ENST00000469003 BAALC-AS2P0C853 105 aa8.19□□□□□ -1.1
CCDC28B-204ENST00000469003 ZCCHC13Q8WW36 166 aaKnown RBP8.19□□□□□ -1.1
CCDC28B-204ENST00000469003 Q6ZQT0 140 aa8.17□□□□□ -1.1
CCDC28B-204ENST00000469003 MTURNQ8N3F0 131 aa8.17□□□□□ -1.1
CCDC28B-204ENST00000469003 KRTAP19-1Q8IUB9 90 aa8.15□□□□□ -1.1
CCDC28B-204ENST00000469003 NDUFB1O75438 58 aa8.14□□□□□ -1.11
CCDC28B-204ENST00000469003 SPINK7P58062 85 aa8.14□□□□□ -1.11
CCDC28B-204ENST00000469003 KRTAP10-10P60014 251 aa8.14□□□□□ -1.11
CCDC28B-204ENST00000469003 KRTAP9-3Q9BYQ3 159 aa8.14□□□□□ -1.11
CCDC28B-204ENST00000469003 Q8N9P0 234 aaPredicted RBP8.13□□□□□ -1.11
CCDC28B-204ENST00000469003 A0A1B0GW54 56 aa8.1□□□□□ -1.11
CCDC28B-204ENST00000469003 JMJD7-PLA2G4BH0Y9G9 81 aa8.1□□□□□ -1.11
CCDC28B-204ENST00000469003 ATXN8Q156A1 80 aa8.09□□□□□ -1.11
CCDC28B-204ENST00000469003 C8orf17Q9NRJ1 99 aa8.09□□□□□ -1.11
CCDC28B-204ENST00000469003 LOC110117498A0A087WWA1 95 aa8.08□□□□□ -1.12
CCDC28B-204ENST00000469003 A8MWP4 228 aa8.08□□□□□ -1.12
CCDC28B-204ENST00000469003 IGKV3D-7A0A0C4DH55 119 aa8.05□□□□□ -1.12
CCDC28B-204ENST00000469003 M0R143 59 aa8.05□□□□□ -1.12
CCDC28B-204ENST00000469003 PDE6GP18545 87 aa8.05□□□□□ -1.12
CCDC28B-204ENST00000469003 NAA38Q9BRA0 125 aaKnown RBP8.05□□□□□ -1.12
CCDC28B-204ENST00000469003 LYRM7Q5U5X0 104 aa8.04□□□□□ -1.12
CCDC28B-204ENST00000469003 WFDC13Q8IUB5 93 aa8.03□□□□□ -1.12
CCDC28B-204ENST00000469003 Q6ZVQ6 151 aa8.02□□□□□ -1.13
CCDC28B-204ENST00000469003 C14orf132Q9NPU4 83 aa8.01□□□□□ -1.13
CCDC28B-204ENST00000469003 PRR15Q8IV56 129 aa8□□□□□ -1.13
CCDC28B-204ENST00000469003 LOC100996750A0A140TA64 210 aa7.98□□□□□ -1.13
CCDC28B-204ENST00000469003 SMCPP49901 116 aaPredicted RBP7.98□□□□□ -1.13
CCDC28B-204ENST00000469003 KRTAP4-6Q9BYQ5 205 aa7.98□□□□□ -1.13
CCDC28B-204ENST00000469003 LINC00846Q9NV44 126 aa7.98□□□□□ -1.13
CCDC28B-204ENST00000469003 NREPQ16612 68 aa7.97□□□□□ -1.13
CCDC28B-204ENST00000469003 MMP24-AS1A0A0U1RRL7 71 aa7.95□□□□□ -1.14
CCDC28B-204ENST00000469003 TMEM254Q8TBM7 123 aa7.95□□□□□ -1.14
CCDC28B-204ENST00000469003 MRPL34Q9BQ48 92 aaKnown RBP7.95□□□□□ -1.14
CCDC28B-204ENST00000469003 hDV103S1A0JD37 113 aa7.89□□□□□ -1.15
CCDC28B-204ENST00000469003 K7EQZ3 153 aa7.88□□□□□ -1.15
CCDC28B-204ENST00000469003 SMIM6P0DI80 62 aa7.88□□□□□ -1.15
CCDC28B-204ENST00000469003 KRTAP19-6Q3LI70 58 aa7.88□□□□□ -1.15
CCDC28B-204ENST00000469003 H1FX-AS1Q4G0G2 97 aa7.87□□□□□ -1.15
CCDC28B-204ENST00000469003 NDUFS5O43920 106 aa7.86□□□□□ -1.15
CCDC28B-204ENST00000469003 H3BT86 120 aa7.85□□□□□ -1.15
CCDC28B-204ENST00000469003 KRTAP6-3Q3LI67 103 aa7.85□□□□□ -1.15
CCDC28B-204ENST00000469003 BATFQ16520 125 aa7.84□□□□□ -1.15
CCDC28B-204ENST00000469003 SVIPQ8NHG7 77 aa7.84□□□□□ -1.15
CCDC28B-204ENST00000469003 TSTD3H0UI37 97 aa7.81□□□□□ -1.16
CCDC28B-204ENST00000469003 BPY2O14599 106 aa7.81□□□□□ -1.16
CCDC28B-204ENST00000469003 IGKV2D-30A0A075B6S6 120 aa7.8□□□□□ -1.16
CCDC28B-204ENST00000469003 C9orf118A6NHY6 69 aa7.8□□□□□ -1.16
CCDC28B-204ENST00000469003 IGKV2-30P06310 120 aa7.8□□□□□ -1.16
CCDC28B-204ENST00000469003 C7orf65Q6ZTY9 151 aa7.8□□□□□ -1.16
CCDC28B-204ENST00000469003 Q5W150 140 aa7.79□□□□□ -1.16
CCDC28B-204ENST00000469003 NEBP20929 6669 aa7.79□□□□□ -1.16
CCDC28B-204ENST00000469003 A0A1W2PPM0 123 aa7.77□□□□□ -1.17
CCDC28B-204ENST00000469003 TAX1BP3O14907 124 aa7.76□□□□□ -1.17
CCDC28B-204ENST00000469003 CASC2Q6XLA1 102 aa7.74□□□□□ -1.17
CCDC28B-204ENST00000469003 Q8N9L7 120 aa7.73□□□□□ -1.17
CCDC28B-204ENST00000469003 HCG22E2RYF7 251 aa7.72□□□□□ -1.17
CCDC28B-204ENST00000469003 CXCL6P80162 114 aa7.68□□□□□ -1.18
CCDC28B-204ENST00000469003 C4orf26Q17RF5 130 aa7.68□□□□□ -1.18
CCDC28B-204ENST00000469003 LOC105371267A0A1B0GV96 52 aa7.67□□□□□ -1.18
CCDC28B-204ENST00000469003 SPCS1Q9Y6A9 102 aa7.65□□□□□ -1.18
CCDC28B-204ENST00000469003 UBL5Q9BZL1 73 aa7.6□□□□□ -1.19
CCDC28B-204ENST00000469003 C5orf47Q569G3 176 aa7.59□□□□□ -1.19
CCDC28B-204ENST00000469003 KRTAP20-1Q3LI63 56 aa7.58□□□□□ -1.2
CCDC28B-204ENST00000469003 KRTAP3-1Q9BYR8 98 aa7.57□□□□□ -1.2
CCDC28B-204ENST00000469003 S4R3F8 94 aa7.56□□□□□ -1.2
CCDC28B-204ENST00000469003 FAM236AA0A1B0GUQ0 79 aa7.55□□□□□ -1.2
CCDC28B-204ENST00000469003 FAM236BA0A1B0GV22 79 aa7.55□□□□□ -1.2
CCDC28B-204ENST00000469003 PRO0461Q9UI25 63 aa7.55□□□□□ -1.2
CCDC28B-204ENST00000469003 MUC12Q9UKN1 5478 aa7.54□□□□□ -1.2
CCDC28B-204ENST00000469003 C1orf64Q8NEQ6 169 aa7.53□□□□□ -1.2
CCDC28B-204ENST00000469003 CSAG1Q6PB30 78 aa7.52□□□□□ -1.21
CCDC28B-204ENST00000469003 K7EP34 96 aa7.49□□□□□ -1.21
CCDC28B-204ENST00000469003 COL5A1-AS1Q5SY13 56 aa7.49□□□□□ -1.21
CCDC28B-204ENST00000469003 LCA10Q71F78 164 aa7.49□□□□□ -1.21
CCDC28B-204ENST00000469003 TP53AIP1Q9HCN2 124 aa7.49□□□□□ -1.21
CCDC28B-204ENST00000469003 MT1BP07438 61 aa7.48□□□□□ -1.21
CCDC28B-204ENST00000469003 Q5VV11 94 aa7.47□□□□□ -1.21
CCDC28B-204ENST00000469003 SPRR2GQ9BYE4 73 aa7.46□□□□□ -1.22
CCDC28B-204ENST00000469003 A6NN06 94 aa7.45□□□□□ -1.22
CCDC28B-204ENST00000469003 KRTAP19-8Q3LI54 63 aa7.45□□□□□ -1.22
CCDC28B-204ENST00000469003 KLKP1Q107X0 134 aa7.39□□□□□ -1.23
CCDC28B-204ENST00000469003 GTF2H5Q6ZYL4 71 aa7.36□□□□□ -1.23
CCDC28B-204ENST00000469003 CYP4F30PQ9H0H9 118 aa7.36□□□□□ -1.23
CCDC28B-204ENST00000469003 KRTAP10-5P60370 271 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms