RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 C9JAW5 83 aa8.83□□□□□ -1
COL7A1-206ENST00000466591 J3KT08 172 aa8.81□□□□□ -1
COL7A1-206ENST00000466591 NDUFB1O75438 58 aa8.81□□□□□ -1
COL7A1-206ENST00000466591 LYRM7Q5U5X0 104 aa8.81□□□□□ -1
COL7A1-206ENST00000466591 BAALC-AS2P0C853 105 aa8.8□□□□□ -1
COL7A1-206ENST00000466591 KRTAP9-8Q9BYQ0 159 aa8.78□□□□□ -1
COL7A1-206ENST00000466591 HRES1P13985 223 aa8.76□□□□□ -1.01
COL7A1-206ENST00000466591 ZCCHC13Q8WW36 166 aaKnown RBP8.75□□□□□ -1.01
COL7A1-206ENST00000466591 ATXN8Q156A1 80 aa8.73□□□□□ -1.01
COL7A1-206ENST00000466591 JMJD7-PLA2G4BH0Y9G9 81 aa8.72□□□□□ -1.01
COL7A1-206ENST00000466591 Q6ZQT0 140 aa8.72□□□□□ -1.01
COL7A1-206ENST00000466591 M0R143 59 aa8.71□□□□□ -1.02
COL7A1-206ENST00000466591 SPINK7P58062 85 aa8.7□□□□□ -1.02
COL7A1-206ENST00000466591 KRTAP10-10P60014 251 aa8.7□□□□□ -1.02
COL7A1-206ENST00000466591 MPLKIPQ8TAP9 179 aa8.69□□□□□ -1.02
COL7A1-206ENST00000466591 MT2AP02795 61 aa8.68□□□□□ -1.02
COL7A1-206ENST00000466591 NAA38Q9BRA0 125 aaKnown RBP8.67□□□□□ -1.02
COL7A1-206ENST00000466591 A8MWP4 228 aa8.66□□□□□ -1.02
COL7A1-206ENST00000466591 PDE6GP18545 87 aa8.66□□□□□ -1.02
COL7A1-206ENST00000466591 C8orf17Q9NRJ1 99 aa8.65□□□□□ -1.02
COL7A1-206ENST00000466591 A0A1B0GW54 56 aa8.64□□□□□ -1.03
COL7A1-206ENST00000466591 WFDC13Q8IUB5 93 aa8.63□□□□□ -1.03
COL7A1-206ENST00000466591 LOC110117498A0A087WWA1 95 aa8.62□□□□□ -1.03
COL7A1-206ENST00000466591 C14orf132Q9NPU4 83 aa8.62□□□□□ -1.03
COL7A1-206ENST00000466591 MT1FP04733 61 aa8.61□□□□□ -1.03
COL7A1-206ENST00000466591 NREPQ16612 68 aa8.61□□□□□ -1.03
COL7A1-206ENST00000466591 Q8N9P0 234 aaPredicted RBP8.61□□□□□ -1.03
COL7A1-206ENST00000466591 Q6ZVQ6 151 aa8.6□□□□□ -1.03
COL7A1-206ENST00000466591 IGKV3D-7A0A0C4DH55 119 aa8.58□□□□□ -1.04
COL7A1-206ENST00000466591 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.58□□□□□ -1.04
COL7A1-206ENST00000466591 USH2AO75445 5202 aa8.58□□□□□ -1.04
COL7A1-206ENST00000466591 NDUFS5O43920 106 aa8.57□□□□□ -1.04
COL7A1-206ENST00000466591 BATFQ16520 125 aa8.55□□□□□ -1.04
COL7A1-206ENST00000466591 KRTAP9-7A8MTY7 169 aa8.54□□□□□ -1.04
COL7A1-206ENST00000466591 PRR15Q8IV56 129 aa8.54□□□□□ -1.04
COL7A1-206ENST00000466591 MRPL34Q9BQ48 92 aaKnown RBP8.52□□□□□ -1.05
COL7A1-206ENST00000466591 LINC00846Q9NV44 126 aa8.52□□□□□ -1.05
COL7A1-206ENST00000466591 SSPOA2VEC9 5147 aa8.51□□□□□ -1.05
COL7A1-206ENST00000466591 TMEM254Q8TBM7 123 aa8.51□□□□□ -1.05
COL7A1-206ENST00000466591 KRTAP9-3Q9BYQ3 159 aa8.51□□□□□ -1.05
COL7A1-206ENST00000466591 LCE2BO14633 110 aa8.5□□□□□ -1.05
COL7A1-206ENST00000466591 TSTD3H0UI37 97 aa8.49□□□□□ -1.05
COL7A1-206ENST00000466591 hDV103S1A0JD37 113 aa8.48□□□□□ -1.05
COL7A1-206ENST00000466591 KRTAP19-1Q8IUB9 90 aa8.48□□□□□ -1.05
COL7A1-206ENST00000466591 SMIM6P0DI80 62 aa8.47□□□□□ -1.05
COL7A1-206ENST00000466591 MMP24-AS1A0A0U1RRL7 71 aa8.46□□□□□ -1.06
COL7A1-206ENST00000466591 K7EQZ3 153 aa8.44□□□□□ -1.06
COL7A1-206ENST00000466591 BPY2O14599 106 aa8.44□□□□□ -1.06
COL7A1-206ENST00000466591 IGKV2D-30A0A075B6S6 120 aa8.43□□□□□ -1.06
COL7A1-206ENST00000466591 IGKV2-30P06310 120 aa8.43□□□□□ -1.06
COL7A1-206ENST00000466591 H3BT86 120 aa8.42□□□□□ -1.06
COL7A1-206ENST00000466591 H1FX-AS1Q4G0G2 97 aa8.41□□□□□ -1.06
COL7A1-206ENST00000466591 C7orf65Q6ZTY9 151 aa8.38□□□□□ -1.07
COL7A1-206ENST00000466591 C9orf118A6NHY6 69 aa8.37□□□□□ -1.07
COL7A1-206ENST00000466591 FCGBPQ9Y6R7 5405 aaPredicted RBP8.36□□□□□ -1.07
COL7A1-206ENST00000466591 A0A1W2PPM0 123 aa8.35□□□□□ -1.07
COL7A1-206ENST00000466591 CASC2Q6XLA1 102 aa8.34□□□□□ -1.07
COL7A1-206ENST00000466591 HCG22E2RYF7 251 aa8.32□□□□□ -1.08
COL7A1-206ENST00000466591 Q8N9L7 120 aa8.3□□□□□ -1.08
COL7A1-206ENST00000466591 TAX1BP3O14907 124 aa8.28□□□□□ -1.08
COL7A1-206ENST00000466591 Q5W150 140 aa8.27□□□□□ -1.09
COL7A1-206ENST00000466591 SPCS1Q9Y6A9 102 aa8.27□□□□□ -1.09
COL7A1-206ENST00000466591 CXCL6P80162 114 aa8.26□□□□□ -1.09
COL7A1-206ENST00000466591 KRTAP19-6Q3LI70 58 aa8.25□□□□□ -1.09
COL7A1-206ENST00000466591 C4orf26Q17RF5 130 aa8.24□□□□□ -1.09
COL7A1-206ENST00000466591 UBL5Q9BZL1 73 aa8.24□□□□□ -1.09
COL7A1-206ENST00000466591 FAM236AA0A1B0GUQ0 79 aa8.21□□□□□ -1.1
COL7A1-206ENST00000466591 FAM236BA0A1B0GV22 79 aa8.21□□□□□ -1.1
COL7A1-206ENST00000466591 C5orf47Q569G3 176 aa8.17□□□□□ -1.1
COL7A1-206ENST00000466591 MACF1Q9UPN3 7388 aaKnown RBP8.14□□□□□ -1.11
COL7A1-206ENST00000466591 S4R3F8 94 aa8.13□□□□□ -1.11
COL7A1-206ENST00000466591 SMCPP49901 116 aaPredicted RBP8.1□□□□□ -1.11
COL7A1-206ENST00000466591 COL5A1-AS1Q5SY13 56 aa8.1□□□□□ -1.11
COL7A1-206ENST00000466591 C1orf64Q8NEQ6 169 aa8.09□□□□□ -1.11
COL7A1-206ENST00000466591 LOC105371267A0A1B0GV96 52 aa8.08□□□□□ -1.12
COL7A1-206ENST00000466591 CSAG1Q6PB30 78 aa8.08□□□□□ -1.12
COL7A1-206ENST00000466591 SYNE2Q8WXH0 6885 aaKnown RBP8.07□□□□□ -1.12
COL7A1-206ENST00000466591 TP53AIP1Q9HCN2 124 aa8.06□□□□□ -1.12
COL7A1-206ENST00000466591 K7EP34 96 aa8.05□□□□□ -1.12
COL7A1-206ENST00000466591 GTF2H5Q6ZYL4 71 aa8□□□□□ -1.13
COL7A1-206ENST00000466591 LCA10Q71F78 164 aa8□□□□□ -1.13
COL7A1-206ENST00000466591 PRO0461Q9UI25 63 aa8□□□□□ -1.13
COL7A1-206ENST00000466591 Q5VV11 94 aa7.98□□□□□ -1.13
COL7A1-206ENST00000466591 A6NN06 94 aa7.97□□□□□ -1.13
COL7A1-206ENST00000466591 KRTAP6-3Q3LI67 103 aa7.97□□□□□ -1.13
COL7A1-206ENST00000466591 KRTAP3-1Q9BYR8 98 aa7.96□□□□□ -1.14
COL7A1-206ENST00000466591 F8W1H4 67 aa7.92□□□□□ -1.14
COL7A1-206ENST00000466591 ETDBQ3ZM63 59 aa7.89□□□□□ -1.15
COL7A1-206ENST00000466591 KLKP1Q107X0 134 aa7.88□□□□□ -1.15
COL7A1-206ENST00000466591 CYP4F30PQ9H0H9 118 aa7.87□□□□□ -1.15
COL7A1-206ENST00000466591 TRAV22A0A0B4J277 110 aa7.86□□□□□ -1.15
COL7A1-206ENST00000466591 SPRR2GQ9BYE4 73 aa7.86□□□□□ -1.15
COL7A1-206ENST00000466591 IMUPQ9GZP8 106 aa7.86□□□□□ -1.15
COL7A1-206ENST00000466591 LOC101927531A0A1B0GV80 90 aa7.85□□□□□ -1.15
COL7A1-206ENST00000466591 MT1BP07438 61 aa7.83□□□□□ -1.16
COL7A1-206ENST00000466591 PCP4L1A6NKN8 68 aa7.81□□□□□ -1.16
COL7A1-206ENST00000466591 HIST1H4AP62805 103 aaKnown RBP7.81□□□□□ -1.16
COL7A1-206ENST00000466591 KRTAP19-8Q3LI54 63 aa7.8□□□□□ -1.16
COL7A1-206ENST00000466591 ACYP1P07311 99 aa7.78□□□□□ -1.16
COL7A1-206ENST00000466591 CRIPTQ9P021 101 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms