RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 CYP4F30PQ9H0H9 118 aa5.29□□□□□ -1.56
SYNE1-217ENST00000466159 A0A087X002 238 aa5.28□□□□□ -1.56
SYNE1-217ENST00000466159 H3BPC8 53 aa5.28□□□□□ -1.56
SYNE1-217ENST00000466159 NOTCH2NLQ7Z3S9 236 aa5.28□□□□□ -1.56
SYNE1-217ENST00000466159 PKD1P98161 4303 aa5.28□□□□□ -1.56
SYNE1-217ENST00000466159 CDK2AP2O75956 126 aa5.27□□□□□ -1.57
SYNE1-217ENST00000466159 LRP1BQ9NZR2 4599 aa5.27□□□□□ -1.57
SYNE1-217ENST00000466159 FAT2Q9NYQ8 4349 aa5.27□□□□□ -1.57
SYNE1-217ENST00000466159 SPINK6Q6UWN8 80 aa5.27□□□□□ -1.57
SYNE1-217ENST00000466159 NDUFS5O43920 106 aa5.26□□□□□ -1.57
SYNE1-217ENST00000466159 KRTAP10-1P60331 282 aa5.25□□□□□ -1.57
SYNE1-217ENST00000466159 TP53AIP1Q9HCN2 124 aa5.25□□□□□ -1.57
SYNE1-217ENST00000466159 SPANXA2-OT1Q8N9U9 137 aa5.24□□□□□ -1.57
SYNE1-217ENST00000466159 MRPL34Q9BQ48 92 aaKnown RBP5.24□□□□□ -1.57
SYNE1-217ENST00000466159 PCOTHQ58A44 107 aa5.23□□□□□ -1.57
SYNE1-217ENST00000466159 Q6ZSA8 131 aa5.23□□□□□ -1.57
SYNE1-217ENST00000466159 PMAIP1Q13794 54 aa5.22□□□□□ -1.57
SYNE1-217ENST00000466159 SSBP3-AS1Q7Z2R9 100 aa5.22□□□□□ -1.57
SYNE1-217ENST00000466159 PSPHP1O15172 72 aa5.21□□□□□ -1.58
SYNE1-217ENST00000466159 CD164Q04900 197 aa5.21□□□□□ -1.58
SYNE1-217ENST00000466159 VPS13BQ7Z7G8 4022 aa5.21□□□□□ -1.58
SYNE1-217ENST00000466159 KRTAP13-2Q52LG2 175 aa5.21□□□□□ -1.58
SYNE1-217ENST00000466159 IGLV7-46A0A075B6I9 117 aa5.19□□□□□ -1.58
SYNE1-217ENST00000466159 Q5W150 140 aa5.18□□□□□ -1.58
SYNE1-217ENST00000466159 A8MUN3 132 aa5.17□□□□□ -1.58
SYNE1-217ENST00000466159 PKHD1P08F94 4074 aa5.16□□□□□ -1.58
SYNE1-217ENST00000466159 KRTAP1-4P0C5Y4 121 aa5.16□□□□□ -1.58
SYNE1-217ENST00000466159 Q5VV11 94 aa5.16□□□□□ -1.58
SYNE1-217ENST00000466159 COA5Q86WW8 74 aa5.15□□□□□ -1.58
SYNE1-217ENST00000466159 A8MU10 97 aa5.14□□□□□ -1.59
SYNE1-217ENST00000466159 KRTAP13-3Q3SY46 172 aa5.14□□□□□ -1.59
SYNE1-217ENST00000466159 Q8N9P0 234 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-217ENST00000466159 SACSQ9NZJ4 4579 aa5.14□□□□□ -1.59
SYNE1-217ENST00000466159 C8orf87E5RJ46 101 aa5.13□□□□□ -1.59
SYNE1-217ENST00000466159 LINC00313P59037 77 aa5.13□□□□□ -1.59
SYNE1-217ENST00000466159 LOC101927531A0A1B0GV80 90 aa5.11□□□□□ -1.59
SYNE1-217ENST00000466159 PLA2G1BP04054 148 aaKnown RBP5.11□□□□□ -1.59
SYNE1-217ENST00000466159 RETNLBQ9BQ08 111 aa5.1□□□□□ -1.59
SYNE1-217ENST00000466159 HRES1P13985 223 aa5.1□□□□□ -1.59
SYNE1-217ENST00000466159 LIMD2Q9BT23 127 aa5.1□□□□□ -1.59
SYNE1-217ENST00000466159 CHKB-CPT1BH3BT56 60 aa5.09□□□□□ -1.59
SYNE1-217ENST00000466159 TYMSOSQ8TAI1 123 aa5.08□□□□□ -1.6
SYNE1-217ENST00000466159 PRR15LQ9BU68 103 aa5.08□□□□□ -1.6
SYNE1-217ENST00000466159 KRTAP16-1A8MUX0 517 aa5.08□□□□□ -1.6
SYNE1-217ENST00000466159 C4orf48Q5BLP8 95 aa5.07□□□□□ -1.6
SYNE1-217ENST00000466159 DYNC1H1Q14204 4646 aaKnown RBP5.06□□□□□ -1.6
SYNE1-217ENST00000466159 FAM229AH3BQW9 127 aa5.06□□□□□ -1.6
SYNE1-217ENST00000466159 Q75L30 129 aa5.06□□□□□ -1.6
SYNE1-217ENST00000466159 SPAG11AQ6PDA7 123 aa5.06□□□□□ -1.6
SYNE1-217ENST00000466159 KTN1-AS1Q86SY8 53 aa5.06□□□□□ -1.6
SYNE1-217ENST00000466159 SMR3BP02814 79 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-217ENST00000466159 LCA10Q71F78 164 aa5.05□□□□□ -1.6
SYNE1-217ENST00000466159 PRR26Q8N8Z3 221 aa5.05□□□□□ -1.6
SYNE1-217ENST00000466159 SPINK1P00995 79 aa5.04□□□□□ -1.6
SYNE1-217ENST00000466159 ATP11AUNQ6ZP68 121 aa5.04□□□□□ -1.6
SYNE1-217ENST00000466159 FAT1Q14517 4588 aa5.03□□□□□ -1.6
SYNE1-217ENST00000466159 KRTAP17-1Q9BYP8 105 aa5.03□□□□□ -1.6
SYNE1-217ENST00000466159 IGKV2-30P06310 120 aa5.03□□□□□ -1.6
SYNE1-217ENST00000466159 A6NN06 94 aa5.02□□□□□ -1.61
SYNE1-217ENST00000466159 SPTSSBQ8NFR3 76 aa5.02□□□□□ -1.61
SYNE1-217ENST00000466159 LCE2DQ5TA82 110 aaPredicted RBP5.02□□□□□ -1.61
SYNE1-217ENST00000466159 RBM12B-AS1Q9P1G2 102 aa5.01□□□□□ -1.61
SYNE1-217ENST00000466159 A6NED7 52 aa5.01□□□□□ -1.61
SYNE1-217ENST00000466159 LINC01558Q9Y6Z2 57 aa5.01□□□□□ -1.61
SYNE1-217ENST00000466159 APOBP04114 4563 aaKnown RBP5.01□□□□□ -1.61
SYNE1-217ENST00000466159 ACYP2P14621 99 aa5□□□□□ -1.61
SYNE1-217ENST00000466159 LINC00304Q8N9R0 145 aa5□□□□□ -1.61
SYNE1-217ENST00000466159 CDC42SE1Q9NRR8 79 aa5□□□□□ -1.61
SYNE1-217ENST00000466159 A0A1B0GVY2 172 aa4.99□□□□□ -1.61
SYNE1-217ENST00000466159 DMAC1Q96GE9 116 aa4.99□□□□□ -1.61
SYNE1-217ENST00000466159 IGKV2D-30A0A075B6S6 120 aa4.99□□□□□ -1.61
SYNE1-217ENST00000466159 KRTAP10-4P60372 401 aaPredicted RBP4.96□□□□□ -1.62
SYNE1-217ENST00000466159 PKHD1L1Q86WI1 4243 aa4.96□□□□□ -1.62
SYNE1-217ENST00000466159 RYR2Q92736 4967 aa4.96□□□□□ -1.62
SYNE1-217ENST00000466159 RPS29P62273 56 aaKnown RBP4.95□□□□□ -1.62
SYNE1-217ENST00000466159 KMT2CQ8NEZ4 4911 aaKnown RBP4.94□□□□□ -1.62
SYNE1-217ENST00000466159 C7orf65Q6ZTY9 151 aa4.94□□□□□ -1.62
SYNE1-217ENST00000466159 SPINK7P58062 85 aa4.93□□□□□ -1.62
SYNE1-217ENST00000466159 C9orf92A6NGG3 77 aa4.92□□□□□ -1.62
SYNE1-217ENST00000466159 Q8N1X5 172 aa4.87□□□□□ -1.63
SYNE1-217ENST00000466159 KRTAP3-3Q9BYR6 98 aa4.87□□□□□ -1.63
SYNE1-217ENST00000466159 KRTAP3-2Q9BYR7 98 aa4.87□□□□□ -1.63
SYNE1-217ENST00000466159 A8MUU9 505 aa4.86□□□□□ -1.63
SYNE1-217ENST00000466159 C20orf166-AS1Q96NR2 134 aa4.86□□□□□ -1.63
SYNE1-217ENST00000466159 A0A1B0GU69 56 aa4.85□□□□□ -1.63
SYNE1-217ENST00000466159 LRP1Q07954 4544 aaKnown RBP4.84□□□□□ -1.63
SYNE1-217ENST00000466159 FLG2Q5D862 2391 aaPredicted RBP4.84□□□□□ -1.63
SYNE1-217ENST00000466159 RYR3Q15413 4870 aa4.82□□□□□ -1.64
SYNE1-217ENST00000466159 TNXBP22105 4242 aa4.82□□□□□ -1.64
SYNE1-217ENST00000466159 HSPG2P98160 4391 aa4.81□□□□□ -1.64
SYNE1-217ENST00000466159 FAT3Q8TDW7 4589 aa4.8□□□□□ -1.64
SYNE1-217ENST00000466159 PRAC1Q96KF2 57 aa4.8□□□□□ -1.64
SYNE1-217ENST00000466159 KRTAP3-1Q9BYR8 98 aa4.78□□□□□ -1.64
SYNE1-217ENST00000466159 Q5VSD8 79 aa4.77□□□□□ -1.65
SYNE1-217ENST00000466159 ADM2Q7Z4H4 148 aa4.76□□□□□ -1.65
SYNE1-217ENST00000466159 KRTAP10-8P60410 259 aa4.76□□□□□ -1.65
SYNE1-217ENST00000466159 BIRC6Q9NR09 4857 aa4.75□□□□□ -1.65
SYNE1-217ENST00000466159 SPATA8Q6RVD6 105 aa4.75□□□□□ -1.65
SYNE1-217ENST00000466159 UQCR11O14957 56 aa4.75□□□□□ -1.65
SYNE1-217ENST00000466159 DMBT1Q9UGM3 2413 aaPredicted RBP4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms