RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 A0A0D9SG42 100 aa0.72□□□□□ -2.29
USP40-211ENST00000464956 A0A1B0GXF2 115 aa0.72□□□□□ -2.29
USP40-211ENST00000464956 LEPROTO15243 131 aa0.72□□□□□ -2.29
USP40-211ENST00000464956 MT1AP04731 61 aa0.72□□□□□ -2.29
USP40-211ENST00000464956 KRTAP6-1Q3LI64 71 aa0.72□□□□□ -2.29
USP40-211ENST00000464956 LCE1EQ5T753 118 aa0.72□□□□□ -2.29
USP40-211ENST00000464956 BAGE3Q86Y29 109 aa0.72□□□□□ -2.29
USP40-211ENST00000464956 A0A1W2PPM0 123 aa0.71□□□□□ -2.3
USP40-211ENST00000464956 SMIM27A0A1W2PRY6 76 aa0.71□□□□□ -2.3
USP40-211ENST00000464956 hADV29S1A0JD25 119 aa0.71□□□□□ -2.3
USP40-211ENST00000464956 EIF4EBP3O60516 100 aaPredicted RBP0.71□□□□□ -2.3
USP40-211ENST00000464956 NDUFB1O75438 58 aa0.71□□□□□ -2.3
USP40-211ENST00000464956 VAMP3Q15836 100 aa0.71□□□□□ -2.3
USP40-211ENST00000464956 BATFQ16520 125 aa0.71□□□□□ -2.3
USP40-211ENST00000464956 C20orf197Q8N268 126 aa0.71□□□□□ -2.3
USP40-211ENST00000464956 NDUFC1O43677 76 aa0.7□□□□□ -2.3
USP40-211ENST00000464956 NDUFS5O43920 106 aa0.7□□□□□ -2.3
USP40-211ENST00000464956 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.7□□□□□ -2.3
USP40-211ENST00000464956 LINC00575Q6W349 94 aa0.7□□□□□ -2.3
USP40-211ENST00000464956 Q6ZVQ6 151 aa0.7□□□□□ -2.3
USP40-211ENST00000464956 ATP5L2Q7Z4Y8 100 aa0.7□□□□□ -2.3
USP40-211ENST00000464956 MUSTN1Q8IVN3 82 aa0.7□□□□□ -2.3
USP40-211ENST00000464956 RPS10P5Q9NQ39 176 aa0.7□□□□□ -2.3
USP40-211ENST00000464956 C8orf17Q9NRJ1 99 aa0.7□□□□□ -2.3
USP40-211ENST00000464956 TRBV7-4A0A0J9YYF1 115 aa0.69□□□□□ -2.3
USP40-211ENST00000464956 A6NDN8 102 aa0.69□□□□□ -2.3
USP40-211ENST00000464956 HCG22E2RYF7 251 aa0.69□□□□□ -2.3
USP40-211ENST00000464956 J3KT08 172 aa0.69□□□□□ -2.3
USP40-211ENST00000464956 MT-ATP8P03928 68 aa0.69□□□□□ -2.3
USP40-211ENST00000464956 MT3P25713 68 aa0.69□□□□□ -2.3
USP40-211ENST00000464956 KRTAP21-1Q3LI58 79 aa0.69□□□□□ -2.3
USP40-211ENST00000464956 LINC00308Q8TCZ7 52 aa0.69□□□□□ -2.3
USP40-211ENST00000464956 C12orf57Q99622 126 aa0.69□□□□□ -2.3
USP40-211ENST00000464956 SMIM7Q9BQ49 75 aa0.69□□□□□ -2.3
USP40-211ENST00000464956 BATF3Q9NR55 127 aa0.69□□□□□ -2.3
USP40-211ENST00000464956 A0A087WVE0 104 aa0.68□□□□□ -2.3
USP40-211ENST00000464956 LINC01546A6NGU7 62 aa0.68□□□□□ -2.3
USP40-211ENST00000464956 ARPC5O15511 151 aa0.68□□□□□ -2.3
USP40-211ENST00000464956 TRGC2P03986 189 aa0.68□□□□□ -2.3
USP40-211ENST00000464956 NDUFV3P56181 108 aaKnown RBP0.68□□□□□ -2.3
USP40-211ENST00000464956 LCE1CQ5T751 118 aa0.68□□□□□ -2.3
USP40-211ENST00000464956 CAMK2N1Q7Z7J9 78 aa0.68□□□□□ -2.3
USP40-211ENST00000464956 SMCO4Q9NRQ5 59 aa0.68□□□□□ -2.3
USP40-211ENST00000464956 KANTRA0A1W2PQU2 76 aa0.67□□□□□ -2.3
USP40-211ENST00000464956 H3BMG7 143 aa0.67□□□□□ -2.3
USP40-211ENST00000464956 J3QQQ9 107 aa0.67□□□□□ -2.3
USP40-211ENST00000464956 TIMM17BO60830 172 aa0.67□□□□□ -2.3
USP40-211ENST00000464956 TSPEAR-AS2P59090 65 aa0.67□□□□□ -2.3
USP40-211ENST00000464956 ADIRFQ15847 76 aa0.67□□□□□ -2.3
USP40-211ENST00000464956 MRPL34Q9BQ48 92 aaKnown RBP0.67□□□□□ -2.3
USP40-211ENST00000464956 SERF1AO75920 110 aa0.66□□□□□ -2.3
USP40-211ENST00000464956 TRACP01848 142 aa0.66□□□□□ -2.3
USP40-211ENST00000464956 SMIM11BQ8TCY0 68 aa0.66□□□□□ -2.3
USP40-211ENST00000464956 HERVK_113P61574 105 aa0.65□□□□□ -2.31
USP40-211ENST00000464956 TCTE3Q8IZS6 198 aa0.65□□□□□ -2.31
USP40-211ENST00000464956 ANKRD29Q8N6D5 301 aa0.65□□□□□ -2.31
USP40-211ENST00000464956 TMEM254Q8TBM7 123 aa0.65□□□□□ -2.31
USP40-211ENST00000464956 NAA38Q9BRA0 125 aaKnown RBP0.65□□□□□ -2.31
USP40-211ENST00000464956 TRAV12-1A0A0B4J245 112 aa0.64□□□□□ -2.31
USP40-211ENST00000464956 SNCGO76070 127 aa0.64□□□□□ -2.31
USP40-211ENST00000464956 UQCC3Q6UW78 93 aa0.64□□□□□ -2.31
USP40-211ENST00000464956 COPS9Q8WXC6 57 aa0.64□□□□□ -2.31
USP40-211ENST00000464956 A0A096LNJ9 63 aa0.63□□□□□ -2.31
USP40-211ENST00000464956 CCKP06307 115 aa0.63□□□□□ -2.31
USP40-211ENST00000464956 PMCHL1Q16048 86 aa0.63□□□□□ -2.31
USP40-211ENST00000464956 H0Y8G0 127 aa0.62□□□□□ -2.31
USP40-211ENST00000464956 FABP2P12104 132 aa0.62□□□□□ -2.31
USP40-211ENST00000464956 PLNP26678 52 aa0.62□□□□□ -2.31
USP40-211ENST00000464956 S100ZQ8WXG8 99 aa0.62□□□□□ -2.31
USP40-211ENST00000464956 HSPB8Q9UJY1 196 aa0.62□□□□□ -2.31
USP40-211ENST00000464956 PAM16Q9Y3D7 125 aa0.62□□□□□ -2.31
USP40-211ENST00000464956 A0A1B0GV72 72 aa0.61□□□□□ -2.31
USP40-211ENST00000464956 SRP19P09132 144 aaKnown RBP0.61□□□□□ -2.31
USP40-211ENST00000464956 LINC00614P0C842 121 aa0.61□□□□□ -2.31
USP40-211ENST00000464956 IFITM1P13164 125 aa0.61□□□□□ -2.31
USP40-211ENST00000464956 FABP9Q0Z7S8 132 aa0.61□□□□□ -2.31
USP40-211ENST00000464956 BVES-AS1Q5T3Y7 98 aa0.61□□□□□ -2.31
USP40-211ENST00000464956 Q6ZQT0 140 aa0.61□□□□□ -2.31
USP40-211ENST00000464956 IFI27L1Q96BM0 104 aa0.61□□□□□ -2.31
USP40-211ENST00000464956 VPS25Q9BRG1 176 aa0.61□□□□□ -2.31
USP40-211ENST00000464956 LOC110117498A0A087WWA1 95 aa0.6□□□□□ -2.31
USP40-211ENST00000464956 MMP24-AS1A0A0U1RRL7 71 aa0.6□□□□□ -2.31
USP40-211ENST00000464956 SMLR1H3BR10 107 aa0.6□□□□□ -2.31
USP40-211ENST00000464956 BLOC1S1P78537 153 aa0.6□□□□□ -2.31
USP40-211ENST00000464956 C21orf62-AS1Q17RA5 79 aa0.6□□□□□ -2.31
USP40-211ENST00000464956 KRTAP12-3P60328 96 aa0.59□□□□□ -2.31
USP40-211ENST00000464956 CXCL6P80162 114 aa0.59□□□□□ -2.31
USP40-211ENST00000464956 URB1-AS1Q96HZ7 61 aa0.59□□□□□ -2.31
USP40-211ENST00000464956 E9PLD3 99 aa0.58□□□□□ -2.32
USP40-211ENST00000464956 DPM2O94777 84 aa0.58□□□□□ -2.32
USP40-211ENST00000464956 IGKCP01834 107 aa0.58□□□□□ -2.32
USP40-211ENST00000464956 IFITM3Q01628 133 aa0.58□□□□□ -2.32
USP40-211ENST00000464956 SCGB1D4Q6XE38 83 aa0.58□□□□□ -2.32
USP40-211ENST00000464956 MT-ND4LP03901 98 aa0.57□□□□□ -2.32
USP40-211ENST00000464956 C18orf32Q8TCD1 76 aa0.57□□□□□ -2.32
USP40-211ENST00000464956 PMCHL2Q9BQD1 86 aa0.57□□□□□ -2.32
USP40-211ENST00000464956 SEC11CQ9BY50 192 aa0.57□□□□□ -2.32
USP40-211ENST00000464956 MUC19Q7Z5P9 8384 aa0.57□□□□□ -2.32
USP40-211ENST00000464956 KRTAP21-2Q3LI59 83 aa0.56□□□□□ -2.32
USP40-211ENST00000464956 COA6Q5JTJ3 125 aaKnown RBP0.56□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms