RNA–Protein interactions for RNA: ENST00000463147.1

USH2A-203, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 618 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-203ENST00000463147 GVINP1Q7Z2Y8 2422 aa1.04□□□□□ -2.24
USH2A-203ENST00000463147 CEP290O15078 2479 aa1.04□□□□□ -2.24
USH2A-203ENST00000463147 NCOR2Q9Y618 2525 aa1.04□□□□□ -2.24
USH2A-203ENST00000463147 M0QZ58 72 aa1.03□□□□□ -2.24
USH2A-203ENST00000463147 XIRP2A4UGR9 3374 aa1.03□□□□□ -2.24
USH2A-203ENST00000463147 MKI67P46013 3256 aaKnown RBP1.02□□□□□ -2.25
USH2A-203ENST00000463147 DCHS1Q96JQ0 3298 aa1.02□□□□□ -2.25
USH2A-203ENST00000463147 NBEAQ8NFP9 2946 aa1.02□□□□□ -2.25
USH2A-203ENST00000463147 TENM2Q9NT68 2774 aa1.02□□□□□ -2.25
USH2A-203ENST00000463147 C5orf42Q9H799 3197 aa1.01□□□□□ -2.25
USH2A-203ENST00000463147 RPS29P62273 56 aaKnown RBP1.01□□□□□ -2.25
USH2A-203ENST00000463147 CFAP54Q96N23 3096 aa1.01□□□□□ -2.25
USH2A-203ENST00000463147 TNRC18O15417 2968 aaPredicted RBP1.01□□□□□ -2.25
USH2A-203ENST00000463147 CHD6Q8TD26 2715 aa1.01□□□□□ -2.25
USH2A-203ENST00000463147 USP34Q70CQ2 3546 aa1.01□□□□□ -2.25
USH2A-203ENST00000463147 WDFY4Q6ZS81 3184 aa1□□□□□ -2.25
USH2A-203ENST00000463147 PRUNE2Q8WUY3 3088 aa1□□□□□ -2.25
USH2A-203ENST00000463147 FRYLO94915 3013 aa1□□□□□ -2.25
USH2A-203ENST00000463147 ZFHX4Q86UP3 3567 aa1□□□□□ -2.25
USH2A-203ENST00000463147 CHD7Q9P2D1 2997 aa1□□□□□ -2.25
USH2A-203ENST00000463147 MUC16Q8WXI7 14507 aa1□□□□□ -2.25
USH2A-203ENST00000463147 ITPR1Q14643 2758 aa1□□□□□ -2.25
USH2A-203ENST00000463147 SPTBN5Q9NRC6 3674 aaKnown RBP1□□□□□ -2.25
USH2A-203ENST00000463147 TRIOO75962 3097 aa1□□□□□ -2.25
USH2A-203ENST00000463147 F8P00451 2351 aa0.99□□□□□ -2.25
USH2A-203ENST00000463147 PIEZO2Q9H5I5 2752 aa0.99□□□□□ -2.25
USH2A-203ENST00000463147 WDFY3Q8IZQ1 3526 aa0.99□□□□□ -2.25
USH2A-203ENST00000463147 CHD9Q3L8U1 2897 aa0.99□□□□□ -2.25
USH2A-203ENST00000463147 HTTP42858 3142 aa0.99□□□□□ -2.25
USH2A-203ENST00000463147 TRANK1O15050 2925 aa0.99□□□□□ -2.25
USH2A-203ENST00000463147 TLN1Q9Y490 2541 aaKnown RBP0.98□□□□□ -2.25
USH2A-203ENST00000463147 MAP1AP78559 2803 aaPredicted RBP0.98□□□□□ -2.25
USH2A-203ENST00000463147 SPEGQ15772 3267 aa0.98□□□□□ -2.25
USH2A-203ENST00000463147 C9orf92A6NGG3 77 aa0.98□□□□□ -2.25
USH2A-203ENST00000463147 TLN2Q9Y4G6 2542 aa0.98□□□□□ -2.25
USH2A-203ENST00000463147 AKAP13Q12802 2813 aa0.98□□□□□ -2.25
USH2A-203ENST00000463147 HIVEP3Q5T1R4 2406 aa0.98□□□□□ -2.25
USH2A-203ENST00000463147 FRYQ5TBA9 3013 aa0.98□□□□□ -2.25
USH2A-203ENST00000463147 KALRNO60229 2985 aa0.98□□□□□ -2.25
USH2A-203ENST00000463147 PTPN13Q12923 2485 aa0.97□□□□□ -2.25
USH2A-203ENST00000463147 CCDC168Q8NDH2 2452 aa0.97□□□□□ -2.25
USH2A-203ENST00000463147 SONP18583 2426 aaKnown RBP0.97□□□□□ -2.25
USH2A-203ENST00000463147 DSPP15924 2871 aaKnown RBP0.97□□□□□ -2.25
USH2A-203ENST00000463147 LAMA2P24043 3122 aaKnown RBP0.97□□□□□ -2.25
USH2A-203ENST00000463147 CSMD1Q96PZ7 3565 aa0.97□□□□□ -2.25
USH2A-203ENST00000463147 RIF1Q5UIP0 2472 aaKnown RBP0.97□□□□□ -2.25
USH2A-203ENST00000463147 NAV2Q8IVL1 2488 aa0.97□□□□□ -2.25
USH2A-203ENST00000463147 DMDP11532 3685 aa0.97□□□□□ -2.25
USH2A-203ENST00000463147 FREM2Q5SZK8 3169 aa0.96□□□□□ -2.26
USH2A-203ENST00000463147 LAMA3Q16787 3333 aa0.96□□□□□ -2.26
USH2A-203ENST00000463147 Q5VSD8 79 aa0.96□□□□□ -2.26
USH2A-203ENST00000463147 VCANP13611 3396 aa0.96□□□□□ -2.26
USH2A-203ENST00000463147 JMJD1CQ15652 2540 aa0.96□□□□□ -2.26
USH2A-203ENST00000463147 DOPEY1Q5JWR5 2465 aa0.96□□□□□ -2.26
USH2A-203ENST00000463147 PRRC2CQ9Y520 2896 aaKnown RBP0.96□□□□□ -2.26
USH2A-203ENST00000463147 BRCA2P51587 3418 aa0.96□□□□□ -2.26
USH2A-203ENST00000463147 REV3LO60673 3130 aa0.95□□□□□ -2.26
USH2A-203ENST00000463147 CDH23Q9H251 3354 aa0.95□□□□□ -2.26
USH2A-203ENST00000463147 ZNF462Q96JM2 2506 aa0.94□□□□□ -2.26
USH2A-203ENST00000463147 DMXL2Q8TDJ6 3036 aa0.94□□□□□ -2.26
USH2A-203ENST00000463147 CELSR2Q9HCU4 2923 aa0.94□□□□□ -2.26
USH2A-203ENST00000463147 USP9XQ93008 2570 aaPredicted RBP0.94□□□□□ -2.26
USH2A-203ENST00000463147 HRNRQ86YZ3 2850 aaPredicted RBP0.94□□□□□ -2.26
USH2A-203ENST00000463147 ASH1LQ9NR48 2969 aaKnown RBP0.94□□□□□ -2.26
USH2A-203ENST00000463147 COL6A5A8TX70 2615 aa0.94□□□□□ -2.26
USH2A-203ENST00000463147 BOD1L1Q8NFC6 3051 aa0.94□□□□□ -2.26
USH2A-203ENST00000463147 MYO9AB2RTY4 2548 aa0.93□□□□□ -2.26
USH2A-203ENST00000463147 ZFYVE26Q68DK2 2539 aa0.93□□□□□ -2.26
USH2A-203ENST00000463147 FAM208BQ5VWN6 2430 aa0.93□□□□□ -2.26
USH2A-203ENST00000463147 TNP1P09430 55 aa0.93□□□□□ -2.26
USH2A-203ENST00000463147 SETXQ7Z333 2677 aaKnown RBP0.93□□□□□ -2.26
USH2A-203ENST00000463147 LAMA1P25391 3075 aa0.93□□□□□ -2.26
USH2A-203ENST00000463147 CELSR3Q9NYQ7 3312 aa0.93□□□□□ -2.26
USH2A-203ENST00000463147 TACC2O95359 2948 aa0.92□□□□□ -2.26
USH2A-203ENST00000463147 MTORP42345 2549 aa0.92□□□□□ -2.26
USH2A-203ENST00000463147 TEX15Q9BXT5 2789 aa0.92□□□□□ -2.26
USH2A-203ENST00000463147 OTOGQ6ZRI0 2925 aa0.92□□□□□ -2.26
USH2A-203ENST00000463147 PIEZO1Q92508 2521 aa0.92□□□□□ -2.26
USH2A-203ENST00000463147 APCP25054 2843 aa0.92□□□□□ -2.26
USH2A-203ENST00000463147 SPENQ96T58 3664 aaKnown RBP0.92□□□□□ -2.26
USH2A-203ENST00000463147 LRBAP50851 2863 aa0.91□□□□□ -2.26
USH2A-203ENST00000463147 SMG1Q96Q15 3661 aaKnown RBP0.91□□□□□ -2.26
USH2A-203ENST00000463147 VPS13DQ5THJ4 4388 aa0.91□□□□□ -2.26
USH2A-203ENST00000463147 PKD1L2Q7Z442 2459 aa0.91□□□□□ -2.26
USH2A-203ENST00000463147 SMR3AQ99954 134 aa0.91□□□□□ -2.26
USH2A-203ENST00000463147 COL12A1Q99715 3063 aa0.91□□□□□ -2.26
USH2A-203ENST00000463147 CENPEQ02224 2701 aa0.91□□□□□ -2.26
USH2A-203ENST00000463147 AKAP9Q99996 3911 aa0.91□□□□□ -2.26
USH2A-203ENST00000463147 CHD8Q9HCK8 2581 aa0.91□□□□□ -2.26
USH2A-203ENST00000463147 GCN1Q92616 2671 aaKnown RBP0.91□□□□□ -2.26
USH2A-203ENST00000463147 UBR5O95071 2799 aaPredicted RBP0.91□□□□□ -2.26
USH2A-203ENST00000463147 DMBT1Q9UGM3 2413 aaPredicted RBP0.9□□□□□ -2.26
USH2A-203ENST00000463147 MYO15AQ9UKN7 3530 aa0.9□□□□□ -2.26
USH2A-203ENST00000463147 CEP295Q9C0D2 2601 aa0.9□□□□□ -2.26
USH2A-203ENST00000463147 UNC79Q9P2D8 2635 aa0.9□□□□□ -2.26
USH2A-203ENST00000463147 DMXL1Q9Y485 3027 aa0.9□□□□□ -2.27
USH2A-203ENST00000463147 TTC28Q96AY4 2481 aa0.9□□□□□ -2.27
USH2A-203ENST00000463147 ANKRD11Q6UB99 2663 aaPredicted RBP0.9□□□□□ -2.27
USH2A-203ENST00000463147 DNAH1Q9P2D7 4330 aa0.9□□□□□ -2.27
USH2A-203ENST00000463147 DCHS2Q6V1P9 2916 aa0.89□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms