RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 PCOTHQ58A44 107 aa1.64□□□□□ -2.15
VPS41-210ENST00000462429 KRTAP26-1Q6PEX3 210 aa1.64□□□□□ -2.15
VPS41-210ENST00000462429 SMIM20Q8N5G0 67 aa1.64□□□□□ -2.15
VPS41-210ENST00000462429 LINC00526Q96FQ7 95 aa1.64□□□□□ -2.15
VPS41-210ENST00000462429 C14orf132Q9NPU4 83 aa1.64□□□□□ -2.15
VPS41-210ENST00000462429 APLNQ9ULZ1 77 aa1.64□□□□□ -2.15
VPS41-210ENST00000462429 CUBNO60494 3623 aa1.64□□□□□ -2.15
VPS41-210ENST00000462429 NBEAL2Q6ZNJ1 2754 aa1.63□□□□□ -2.15
VPS41-210ENST00000462429 TRBV7-7A0A0K0K1E9 115 aa1.63□□□□□ -2.15
VPS41-210ENST00000462429 NBDYA0A0U1RRE5 68 aa1.63□□□□□ -2.15
VPS41-210ENST00000462429 ATOX1O00244 68 aa1.63□□□□□ -2.15
VPS41-210ENST00000462429 BCE1O60756 84 aa1.63□□□□□ -2.15
VPS41-210ENST00000462429 MT-ATP8P03928 68 aa1.63□□□□□ -2.15
VPS41-210ENST00000462429 UBE2BP63146 152 aa1.63□□□□□ -2.15
VPS41-210ENST00000462429 KRTAP13-4Q3LI77 160 aa1.63□□□□□ -2.15
VPS41-210ENST00000462429 Q6JHZ5 121 aa1.63□□□□□ -2.15
VPS41-210ENST00000462429 Q6ZRX8 168 aa1.63□□□□□ -2.15
VPS41-210ENST00000462429 C22orf24Q9Y442 160 aa1.63□□□□□ -2.15
VPS41-210ENST00000462429 MAST4O15021 2626 aa1.62□□□□□ -2.15
VPS41-210ENST00000462429 HIST1H4AP62805 103 aaKnown RBP1.62□□□□□ -2.15
VPS41-210ENST00000462429 NREPQ16612 68 aa1.62□□□□□ -2.15
VPS41-210ENST00000462429 Q6ZQT0 140 aa1.62□□□□□ -2.15
VPS41-210ENST00000462429 C9orf163Q8N9P6 203 aa1.62□□□□□ -2.15
VPS41-210ENST00000462429 COL6A5A8TX70 2615 aa1.62□□□□□ -2.15
VPS41-210ENST00000462429 IGLV5-48A0A075B6I7 105 aa1.61□□□□□ -2.15
VPS41-210ENST00000462429 TRBV7-4A0A0J9YYF1 115 aa1.61□□□□□ -2.15
VPS41-210ENST00000462429 FAM236AA0A1B0GUQ0 79 aa1.61□□□□□ -2.15
VPS41-210ENST00000462429 FAM236BA0A1B0GV22 79 aa1.61□□□□□ -2.15
VPS41-210ENST00000462429 UQCRQO14949 82 aa1.61□□□□□ -2.15
VPS41-210ENST00000462429 SPRR1AP35321 89 aa1.61□□□□□ -2.15
VPS41-210ENST00000462429 RPL37AP61513 92 aaKnown RBP1.61□□□□□ -2.15
VPS41-210ENST00000462429 HAMPP81172 84 aa1.61□□□□□ -2.15
VPS41-210ENST00000462429 C1orf134Q5TEV5 83 aa1.61□□□□□ -2.15
VPS41-210ENST00000462429 DEFB105AQ8NG35 78 aa1.61□□□□□ -2.15
VPS41-210ENST00000462429 LINC00846Q9NV44 126 aa1.61□□□□□ -2.15
VPS41-210ENST00000462429 TENM1Q9UKZ4 2725 aa1.61□□□□□ -2.15
VPS41-210ENST00000462429 STAB1Q9NY15 2570 aa1.61□□□□□ -2.15
VPS41-210ENST00000462429 ANK3Q12955 4377 aaKnown RBP1.61□□□□□ -2.15
VPS41-210ENST00000462429 VWFP04275 2813 aa1.6□□□□□ -2.15
VPS41-210ENST00000462429 A0A096LNI7 61 aa1.6□□□□□ -2.15
VPS41-210ENST00000462429 C1orf137Q5JT78 98 aa1.6□□□□□ -2.15
VPS41-210ENST00000462429 C7orf65Q6ZTY9 151 aa1.6□□□□□ -2.15
VPS41-210ENST00000462429 SERP2Q8N6R1 65 aa1.6□□□□□ -2.15
VPS41-210ENST00000462429 MUC19Q7Z5P9 8384 aa1.6□□□□□ -2.15
VPS41-210ENST00000462429 FBN1P35555 2871 aaKnown RBP1.59□□□□□ -2.15
VPS41-210ENST00000462429 A0A087WTM6 91 aa1.59□□□□□ -2.15
VPS41-210ENST00000462429 NDUFC1O43677 76 aa1.59□□□□□ -2.15
VPS41-210ENST00000462429 NDUFB1O75438 58 aa1.59□□□□□ -2.15
VPS41-210ENST00000462429 LY6G6CO95867 125 aa1.59□□□□□ -2.15
VPS41-210ENST00000462429 COX7CP15954 63 aa1.59□□□□□ -2.15
VPS41-210ENST00000462429 SS18L2Q9UHA2 77 aa1.59□□□□□ -2.15
VPS41-210ENST00000462429 TRRAPQ9Y4A5 3859 aa1.58□□□□□ -2.16
VPS41-210ENST00000462429 MGAM2Q2M2H8 2515 aa1.58□□□□□ -2.16
VPS41-210ENST00000462429 IGKV3D-7A0A0C4DH55 119 aa1.58□□□□□ -2.16
VPS41-210ENST00000462429 J3KT08 172 aa1.58□□□□□ -2.16
VPS41-210ENST00000462429 M0R2N4 97 aa1.58□□□□□ -2.16
VPS41-210ENST00000462429 CRYGAP11844 174 aa1.58□□□□□ -2.16
VPS41-210ENST00000462429 C9orf153Q5TBE3 101 aa1.58□□□□□ -2.16
VPS41-210ENST00000462429 Q6ZRN7 208 aaPredicted RBP1.58□□□□□ -2.16
VPS41-210ENST00000462429 COA5Q86WW8 74 aa1.58□□□□□ -2.16
VPS41-210ENST00000462429 SPRR4Q96PI1 79 aa1.58□□□□□ -2.16
VPS41-210ENST00000462429 ERC2-IT1O76042 136 aa1.57□□□□□ -2.16
VPS41-210ENST00000462429 SPRR1BP22528 89 aa1.57□□□□□ -2.16
VPS41-210ENST00000462429 PRLHP81277 87 aa1.57□□□□□ -2.16
VPS41-210ENST00000462429 NOTCH1P46531 2555 aa1.57□□□□□ -2.16
VPS41-210ENST00000462429 ATP5EP56381 51 aaPredicted RBP1.56□□□□□ -2.16
VPS41-210ENST00000462429 PHF5AQ7RTV0 110 aaKnown RBP1.56□□□□□ -2.16
VPS41-210ENST00000462429 SSBP3-AS1Q7Z2R9 100 aa1.56□□□□□ -2.16
VPS41-210ENST00000462429 PLAC8Q9NZF1 115 aa1.56□□□□□ -2.16
VPS41-210ENST00000462429 PKD1L1Q8TDX9 2849 aa1.56□□□□□ -2.16
VPS41-210ENST00000462429 A0A087WSZ3 146 aa1.55□□□□□ -2.16
VPS41-210ENST00000462429 A0A087WVE0 104 aa1.55□□□□□ -2.16
VPS41-210ENST00000462429 HCG22E2RYF7 251 aa1.55□□□□□ -2.16
VPS41-210ENST00000462429 CCDC179H3BU77 68 aa1.55□□□□□ -2.16
VPS41-210ENST00000462429 KLKP1Q107X0 134 aa1.55□□□□□ -2.16
VPS41-210ENST00000462429 TP53AIP1Q9HCN2 124 aa1.55□□□□□ -2.16
VPS41-210ENST00000462429 NBEAL1Q6ZS30 2694 aa1.55□□□□□ -2.16
VPS41-210ENST00000462429 HMCN1Q96RW7 5635 aa1.54□□□□□ -2.16
VPS41-210ENST00000462429 RPS28P62857 69 aaKnown RBP1.54□□□□□ -2.16
VPS41-210ENST00000462429 C20orf197Q8N268 126 aa1.54□□□□□ -2.16
VPS41-210ENST00000462429 TENM3Q9P273 2699 aa1.53□□□□□ -2.16
VPS41-210ENST00000462429 CASC2Q6XLA1 102 aa1.53□□□□□ -2.16
VPS41-210ENST00000462429 PRR15Q8IV56 129 aa1.53□□□□□ -2.16
VPS41-210ENST00000462429 TMEM254Q8TBM7 123 aa1.53□□□□□ -2.16
VPS41-210ENST00000462429 LIMD2Q9BT23 127 aa1.53□□□□□ -2.16
VPS41-210ENST00000462429 STAB2Q8WWQ8 2551 aa1.52□□□□□ -2.17
VPS41-210ENST00000462429 hDV103S1A0JD37 113 aa1.52□□□□□ -2.17
VPS41-210ENST00000462429 K7EQZ3 153 aa1.52□□□□□ -2.17
VPS41-210ENST00000462429 SPAG11AQ6PDA7 123 aa1.52□□□□□ -2.17
VPS41-210ENST00000462429 SPINK6Q6UWN8 80 aa1.52□□□□□ -2.17
VPS41-210ENST00000462429 FP248Q71RG6 208 aaPredicted RBP1.52□□□□□ -2.17
VPS41-210ENST00000462429 LINC00472Q9H8W2 130 aa1.52□□□□□ -2.17
VPS41-210ENST00000462429 ANK2Q01484 3957 aa1.51□□□□□ -2.17
VPS41-210ENST00000462429 SPINK1P00995 79 aa1.51□□□□□ -2.17
VPS41-210ENST00000462429 Q1T7F1 81 aa1.51□□□□□ -2.17
VPS41-210ENST00000462429 ASB16-AS1Q495Z4 193 aa1.51□□□□□ -2.17
VPS41-210ENST00000462429 Q5XG85 94 aa1.51□□□□□ -2.17
VPS41-210ENST00000462429 Q6ZSA8 131 aa1.51□□□□□ -2.17
VPS41-210ENST00000462429 SERP1Q9Y6X1 66 aa1.51□□□□□ -2.17
VPS41-210ENST00000462429 TRAV22A0A0B4J277 110 aa1.5□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms