RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 A0A1B0GW54 56 aa11.86□□□□□ -0.51
PTPN4-208ENST00000460289 PDE6GP18545 87 aa11.86□□□□□ -0.51
PTPN4-208ENST00000460289 A0A1B0GVX0 72 aa11.85□□□□□ -0.51
PTPN4-208ENST00000460289 C8orf87E5RJ46 101 aa11.85□□□□□ -0.51
PTPN4-208ENST00000460289 LOC110117498A0A087WWA1 95 aa11.84□□□□□ -0.51
PTPN4-208ENST00000460289 LOC105371267A0A1B0GV96 52 aa11.84□□□□□ -0.51
PTPN4-208ENST00000460289 KRTAP10-6P60371 365 aaPredicted RBP11.82□□□□□ -0.52
PTPN4-208ENST00000460289 LORP23490 312 aaPredicted RBP11.81□□□□□ -0.52
PTPN4-208ENST00000460289 NDUFB1O75438 58 aa11.78□□□□□ -0.52
PTPN4-208ENST00000460289 FLGP20930 4061 aaPredicted RBP11.77□□□□□ -0.53
PTPN4-208ENST00000460289 C14orf132Q9NPU4 83 aa11.77□□□□□ -0.53
PTPN4-208ENST00000460289 C9orf118A6NHY6 69 aa11.76□□□□□ -0.53
PTPN4-208ENST00000460289 KRTAP9-6A0A140TA67 174 aa11.73□□□□□ -0.53
PTPN4-208ENST00000460289 TAX1BP3O14907 124 aa11.71□□□□□ -0.53
PTPN4-208ENST00000460289 A0A1W2PPM0 123 aa11.7□□□□□ -0.54
PTPN4-208ENST00000460289 A8MWP4 228 aa11.69□□□□□ -0.54
PTPN4-208ENST00000460289 H3BT86 120 aa11.69□□□□□ -0.54
PTPN4-208ENST00000460289 NREPQ16612 68 aa11.67□□□□□ -0.54
PTPN4-208ENST00000460289 C8orf17Q9NRJ1 99 aa11.64□□□□□ -0.55
PTPN4-208ENST00000460289 RBM12B-AS1Q9P1G2 102 aa11.64□□□□□ -0.55
PTPN4-208ENST00000460289 Q8N9P0 234 aaPredicted RBP11.63□□□□□ -0.55
PTPN4-208ENST00000460289 ZCCHC13Q8WW36 166 aaKnown RBP11.63□□□□□ -0.55
PTPN4-208ENST00000460289 IGKV3D-7A0A0C4DH55 119 aa11.62□□□□□ -0.55
PTPN4-208ENST00000460289 FAM236DA0A1B0GTK5 79 aa11.62□□□□□ -0.55
PTPN4-208ENST00000460289 FAM236CP0DP71 79 aa11.62□□□□□ -0.55
PTPN4-208ENST00000460289 HRES1P13985 223 aa11.6□□□□□ -0.55
PTPN4-208ENST00000460289 MTURNQ8N3F0 131 aa11.59□□□□□ -0.55
PTPN4-208ENST00000460289 MPLKIPQ8TAP9 179 aa11.59□□□□□ -0.55
PTPN4-208ENST00000460289 PRR15Q8IV56 129 aa11.58□□□□□ -0.56
PTPN4-208ENST00000460289 Q6ZVQ6 151 aa11.56□□□□□ -0.56
PTPN4-208ENST00000460289 SPCS1Q9Y6A9 102 aa11.55□□□□□ -0.56
PTPN4-208ENST00000460289 FSIP2Q5CZC0 6907 aa11.53□□□□□ -0.56
PTPN4-208ENST00000460289 SPINK7P58062 85 aa11.52□□□□□ -0.57
PTPN4-208ENST00000460289 CRCT1Q9UGL9 99 aa11.52□□□□□ -0.57
PTPN4-208ENST00000460289 COL5A1-AS1Q5SY13 56 aa11.49□□□□□ -0.57
PTPN4-208ENST00000460289 TMEM254Q8TBM7 123 aa11.47□□□□□ -0.57
PTPN4-208ENST00000460289 MMP24-AS1A0A0U1RRL7 71 aa11.46□□□□□ -0.57
PTPN4-208ENST00000460289 BPY2O14599 106 aa11.46□□□□□ -0.57
PTPN4-208ENST00000460289 MRPL34Q9BQ48 92 aaKnown RBP11.46□□□□□ -0.57
PTPN4-208ENST00000460289 K7EQZ3 153 aa11.44□□□□□ -0.58
PTPN4-208ENST00000460289 hDV103S1A0JD37 113 aa11.42□□□□□ -0.58
PTPN4-208ENST00000460289 SMCPP49901 116 aaPredicted RBP11.42□□□□□ -0.58
PTPN4-208ENST00000460289 KRTAP9-8Q9BYQ0 159 aa11.42□□□□□ -0.58
PTPN4-208ENST00000460289 K7EP34 96 aa11.36□□□□□ -0.59
PTPN4-208ENST00000460289 NDUFS5O43920 106 aa11.36□□□□□ -0.59
PTPN4-208ENST00000460289 PRO0461Q9UI25 63 aa11.34□□□□□ -0.59
PTPN4-208ENST00000460289 WFDC13Q8IUB5 93 aa11.33□□□□□ -0.6
PTPN4-208ENST00000460289 UBL5Q9BZL1 73 aa11.29□□□□□ -0.6
PTPN4-208ENST00000460289 CASC2Q6XLA1 102 aa11.27□□□□□ -0.61
PTPN4-208ENST00000460289 Q8N9L7 120 aa11.27□□□□□ -0.61
PTPN4-208ENST00000460289 MT2AP02795 61 aa11.26□□□□□ -0.61
PTPN4-208ENST00000460289 GTF2H5Q6ZYL4 71 aa11.26□□□□□ -0.61
PTPN4-208ENST00000460289 LINC00846Q9NV44 126 aa11.26□□□□□ -0.61
PTPN4-208ENST00000460289 PCP4L1A6NKN8 68 aa11.2□□□□□ -0.62
PTPN4-208ENST00000460289 F8W1H4 67 aa11.2□□□□□ -0.62
PTPN4-208ENST00000460289 HCG22E2RYF7 251 aa11.19□□□□□ -0.62
PTPN4-208ENST00000460289 Q5W150 140 aa11.19□□□□□ -0.62
PTPN4-208ENST00000460289 IGKV2D-30A0A075B6S6 120 aa11.17□□□□□ -0.62
PTPN4-208ENST00000460289 IGKV2-30P06310 120 aa11.17□□□□□ -0.62
PTPN4-208ENST00000460289 KRTAP10-10P60014 251 aa11.17□□□□□ -0.62
PTPN4-208ENST00000460289 MT1FP04733 61 aa11.16□□□□□ -0.62
PTPN4-208ENST00000460289 C7orf65Q6ZTY9 151 aa11.16□□□□□ -0.62
PTPN4-208ENST00000460289 CXCL6P80162 114 aa11.15□□□□□ -0.62
PTPN4-208ENST00000460289 H1FX-AS1Q4G0G2 97 aa11.11□□□□□ -0.63
PTPN4-208ENST00000460289 ETDBQ3ZM63 59 aa11.1□□□□□ -0.63
PTPN4-208ENST00000460289 USH2AO75445 5202 aa11.08□□□□□ -0.64
PTPN4-208ENST00000460289 KRTAP9-3Q9BYQ3 159 aa11.07□□□□□ -0.64
PTPN4-208ENST00000460289 LCE2BO14633 110 aa10.98□□□□□ -0.65
PTPN4-208ENST00000460289 TP53AIP1Q9HCN2 124 aa10.98□□□□□ -0.65
PTPN4-208ENST00000460289 C4orf26Q17RF5 130 aa10.96□□□□□ -0.65
PTPN4-208ENST00000460289 SSPOA2VEC9 5147 aa10.96□□□□□ -0.66
PTPN4-208ENST00000460289 ACYP1P07311 99 aa10.91□□□□□ -0.66
PTPN4-208ENST00000460289 FAM240AA0A1B0GVK7 77 aa10.83□□□□□ -0.68
PTPN4-208ENST00000460289 C1orf64Q8NEQ6 169 aa10.79□□□□□ -0.68
PTPN4-208ENST00000460289 ATP5EP2Q5VTU8 51 aa10.78□□□□□ -0.68
PTPN4-208ENST00000460289 KRTAP3-1Q9BYR8 98 aa10.78□□□□□ -0.68
PTPN4-208ENST00000460289 KRTAP19-1Q8IUB9 90 aa10.77□□□□□ -0.69
PTPN4-208ENST00000460289 S4R3F8 94 aa10.73□□□□□ -0.69
PTPN4-208ENST00000460289 C5orf47Q569G3 176 aa10.72□□□□□ -0.69
PTPN4-208ENST00000460289 HIST1H4AP62805 103 aaKnown RBP10.71□□□□□ -0.69
PTPN4-208ENST00000460289 CYP4F30PQ9H0H9 118 aa10.71□□□□□ -0.69
PTPN4-208ENST00000460289 TRAV22A0A0B4J277 110 aa10.7□□□□□ -0.7
PTPN4-208ENST00000460289 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.7□□□□□ -0.7
PTPN4-208ENST00000460289 FCGBPQ9Y6R7 5405 aaPredicted RBP10.68□□□□□ -0.7
PTPN4-208ENST00000460289 CSAG1Q6PB30 78 aa10.68□□□□□ -0.7
PTPN4-208ENST00000460289 LOC101927531A0A1B0GV80 90 aa10.66□□□□□ -0.7
PTPN4-208ENST00000460289 LCA10Q71F78 164 aa10.64□□□□□ -0.71
PTPN4-208ENST00000460289 UQCRQO14949 82 aa10.62□□□□□ -0.71
PTPN4-208ENST00000460289 LINC00643Q86TS7 51 aa10.62□□□□□ -0.71
PTPN4-208ENST00000460289 KRTAP19-6Q3LI70 58 aa10.61□□□□□ -0.71
PTPN4-208ENST00000460289 FAM236AA0A1B0GUQ0 79 aa10.59□□□□□ -0.71
PTPN4-208ENST00000460289 FAM236BA0A1B0GV22 79 aa10.59□□□□□ -0.71
PTPN4-208ENST00000460289 ATOX1O00244 68 aa10.58□□□□□ -0.72
PTPN4-208ENST00000460289 A0A1B0GV90 55 aa10.57□□□□□ -0.72
PTPN4-208ENST00000460289 KRTAP9-7A8MTY7 169 aa10.55□□□□□ -0.72
PTPN4-208ENST00000460289 H0Y9P7 68 aa10.54□□□□□ -0.72
PTPN4-208ENST00000460289 A0A087WVE0 104 aa10.53□□□□□ -0.72
PTPN4-208ENST00000460289 KRTAP3-3Q9BYR6 98 aa10.48□□□□□ -0.73
PTPN4-208ENST00000460289 J3QR89 54 aa10.42□□□□□ -0.74
PTPN4-208ENST00000460289 LINC00208Q96KT6 92 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms