RNA–Protein interactions for RNA: ENST00000460112.3

SHROOM4-203, Transcript of shroom family member 4, humanhuman

TSL 5 BASIC

Gene SHROOM4, Length 8,919 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4-203ENST00000460112 Q8NDZ9 215 aa5.18□□□□□ -1.58
SHROOM4-203ENST00000460112 LAMA1P25391 3075 aa5.17□□□□□ -1.58
SHROOM4-203ENST00000460112 TENM4Q6N022 2769 aa5.17□□□□□ -1.58
SHROOM4-203ENST00000460112 KRTAP1-5Q9BYS1 174 aa5.16□□□□□ -1.58
SHROOM4-203ENST00000460112 KRTAP10-2P60368 255 aa5.15□□□□□ -1.58
SHROOM4-203ENST00000460112 A8MUU9 505 aa5.15□□□□□ -1.59
SHROOM4-203ENST00000460112 FREM2Q5SZK8 3169 aa5.15□□□□□ -1.59
SHROOM4-203ENST00000460112 BOD1L1Q8NFC6 3051 aa5.15□□□□□ -1.59
SHROOM4-203ENST00000460112 MKI67P46013 3256 aaKnown RBP5.14□□□□□ -1.59
SHROOM4-203ENST00000460112 DMXL1Q9Y485 3027 aa5.13□□□□□ -1.59
SHROOM4-203ENST00000460112 SRRM2Q9UQ35 2752 aaKnown RBP5.12□□□□□ -1.59
SHROOM4-203ENST00000460112 XIRP2A4UGR9 3374 aa5.12□□□□□ -1.59
SHROOM4-203ENST00000460112 PP632Q6XCG6 107 aa5.11□□□□□ -1.59
SHROOM4-203ENST00000460112 UNC80Q8N2C7 3258 aa5.11□□□□□ -1.59
SHROOM4-203ENST00000460112 LAMA3Q16787 3333 aa5.1□□□□□ -1.59
SHROOM4-203ENST00000460112 NOTCH2NLQ7Z3S9 236 aa5.1□□□□□ -1.59
SHROOM4-203ENST00000460112 TNP1P09430 55 aa5.1□□□□□ -1.59
SHROOM4-203ENST00000460112 HRNRQ86YZ3 2850 aaPredicted RBP5.09□□□□□ -1.59
SHROOM4-203ENST00000460112 CELSR1Q9NYQ6 3014 aa5.07□□□□□ -1.6
SHROOM4-203ENST00000460112 ATMQ13315 3056 aa5.06□□□□□ -1.6
SHROOM4-203ENST00000460112 USP34Q70CQ2 3546 aa5.05□□□□□ -1.6
SHROOM4-203ENST00000460112 A8MU10 97 aa5.04□□□□□ -1.6
SHROOM4-203ENST00000460112 REV3LO60673 3130 aa5.02□□□□□ -1.61
SHROOM4-203ENST00000460112 KRTAP11-1Q8IUC1 163 aa5.01□□□□□ -1.61
SHROOM4-203ENST00000460112 KRTAP13-1Q8IUC0 172 aa4.99□□□□□ -1.61
SHROOM4-203ENST00000460112 VWFP04275 2813 aa4.99□□□□□ -1.61
SHROOM4-203ENST00000460112 CELSR3Q9NYQ7 3312 aa4.99□□□□□ -1.61
SHROOM4-203ENST00000460112 PKD1L1Q8TDX9 2849 aa4.98□□□□□ -1.61
SHROOM4-203ENST00000460112 C10orf95Q9H7T3 257 aa4.98□□□□□ -1.61
SHROOM4-203ENST00000460112 Q6ZRN7 208 aaPredicted RBP4.98□□□□□ -1.61
SHROOM4-203ENST00000460112 COL6A3P12111 3177 aa4.97□□□□□ -1.61
SHROOM4-203ENST00000460112 KRTAP21-3Q3LHN1 58 aa4.96□□□□□ -1.62
SHROOM4-203ENST00000460112 CFAP47Q6ZTR5 3102 aa4.93□□□□□ -1.62
SHROOM4-203ENST00000460112 PRO2289Q9P1D8 64 aa4.91□□□□□ -1.62
SHROOM4-203ENST00000460112 COL7A1Q02388 2944 aa4.91□□□□□ -1.62
SHROOM4-203ENST00000460112 KRTAP13-2Q52LG2 175 aa4.9□□□□□ -1.63
SHROOM4-203ENST00000460112 BRCA2P51587 3418 aa4.89□□□□□ -1.63
SHROOM4-203ENST00000460112 TENM2Q9NT68 2774 aa4.87□□□□□ -1.63
SHROOM4-203ENST00000460112 VCANP13611 3396 aa4.84□□□□□ -1.63
SHROOM4-203ENST00000460112 P0C880 135 aa4.83□□□□□ -1.64
SHROOM4-203ENST00000460112 KRTAP10-8P60410 259 aa4.82□□□□□ -1.64
SHROOM4-203ENST00000460112 ZFHX3Q15911 3703 aa4.81□□□□□ -1.64
SHROOM4-203ENST00000460112 TPRXLQ17RH7 258 aa4.78□□□□□ -1.64
SHROOM4-203ENST00000460112 CDH23Q9H251 3354 aa4.78□□□□□ -1.64
SHROOM4-203ENST00000460112 DNAH14Q0VDD8 3507 aa4.77□□□□□ -1.65
SHROOM4-203ENST00000460112 H0YAA0 97 aa4.76□□□□□ -1.65
SHROOM4-203ENST00000460112 KRTAP7-1Q8IUC3 87 aa4.76□□□□□ -1.65
SHROOM4-203ENST00000460112 XP32Q5T750 250 aa4.76□□□□□ -1.65
SHROOM4-203ENST00000460112 EYSQ5T1H1 3165 aa4.74□□□□□ -1.65
SHROOM4-203ENST00000460112 MEGF8Q7Z7M0 2845 aa4.73□□□□□ -1.65
SHROOM4-203ENST00000460112 SPEGQ15772 3267 aa4.72□□□□□ -1.65
SHROOM4-203ENST00000460112 FBN1P35555 2871 aaKnown RBP4.68□□□□□ -1.66
SHROOM4-203ENST00000460112 KRTAP10-10P60014 251 aa4.68□□□□□ -1.66
SHROOM4-203ENST00000460112 FBN3Q75N90 2809 aa4.65□□□□□ -1.67
SHROOM4-203ENST00000460112 LOC400499M0QZD8 3231 aa4.62□□□□□ -1.67
SHROOM4-203ENST00000460112 KRTAP1-4P0C5Y4 121 aa4.61□□□□□ -1.67
SHROOM4-203ENST00000460112 A0A1B0GVY2 172 aa4.61□□□□□ -1.67
SHROOM4-203ENST00000460112 MYO15AQ9UKN7 3530 aa4.61□□□□□ -1.67
SHROOM4-203ENST00000460112 SZT2Q5T011 3432 aa4.56□□□□□ -1.68
SHROOM4-203ENST00000460112 KRTAP13-3Q3SY46 172 aa4.56□□□□□ -1.68
SHROOM4-203ENST00000460112 WDFY3Q8IZQ1 3526 aa4.51□□□□□ -1.69
SHROOM4-203ENST00000460112 SPTBN5Q9NRC6 3674 aaKnown RBP4.51□□□□□ -1.69
SHROOM4-203ENST00000460112 KRTAP13-4Q3LI77 160 aa4.47□□□□□ -1.69
SHROOM4-203ENST00000460112 OTOGQ6ZRI0 2925 aa4.46□□□□□ -1.7
SHROOM4-203ENST00000460112 INE1O15225 51 aa4.45□□□□□ -1.7
SHROOM4-203ENST00000460112 ASPMQ8IZT6 3477 aa4.4□□□□□ -1.7
SHROOM4-203ENST00000460112 NBPF19A0A087WUL8 3843 aa4.4□□□□□ -1.7
SHROOM4-203ENST00000460112 KRTAP12-2P59991 146 aa4.4□□□□□ -1.71
SHROOM4-203ENST00000460112 SMG1Q96Q15 3661 aaKnown RBP4.39□□□□□ -1.71
SHROOM4-203ENST00000460112 DCHS1Q96JQ0 3298 aa4.38□□□□□ -1.71
SHROOM4-203ENST00000460112 DMDP11532 3685 aa4.37□□□□□ -1.71
SHROOM4-203ENST00000460112 ZFHX4Q86UP3 3567 aa4.36□□□□□ -1.71
SHROOM4-203ENST00000460112 LAMA5O15230 3695 aa4.34□□□□□ -1.71
SHROOM4-203ENST00000460112 KRTAP23-1A1A580 65 aa4.34□□□□□ -1.72
SHROOM4-203ENST00000460112 KRTAP15-1Q3LI76 137 aa4.33□□□□□ -1.72
SHROOM4-203ENST00000460112 SPENQ96T58 3664 aaKnown RBP4.31□□□□□ -1.72
SHROOM4-203ENST00000460112 KRTAP12-1P59990 96 aa4.29□□□□□ -1.72
SHROOM4-203ENST00000460112 RELNP78509 3460 aa4.29□□□□□ -1.72
SHROOM4-203ENST00000460112 TRRAPQ9Y4A5 3859 aa4.24□□□□□ -1.73
SHROOM4-203ENST00000460112 CSMD1Q96PZ7 3565 aa4.19□□□□□ -1.74
SHROOM4-203ENST00000460112 KRTAP10-6P60371 365 aaPredicted RBP4.13□□□□□ -1.75
SHROOM4-203ENST00000460112 VPS13CQ709C8 3753 aa4.12□□□□□ -1.75
SHROOM4-203ENST00000460112 AKAP9Q99996 3911 aa4.11□□□□□ -1.75
SHROOM4-203ENST00000460112 KRTAP10-12P60413 245 aa4.11□□□□□ -1.75
SHROOM4-203ENST00000460112 KRTAP3-1Q9BYR8 98 aa4.09□□□□□ -1.76
SHROOM4-203ENST00000460112 CUBNO60494 3623 aa4.07□□□□□ -1.76
SHROOM4-203ENST00000460112 MUC3AQ02505 3323 aa4.06□□□□□ -1.76
SHROOM4-203ENST00000460112 SVEP1Q4LDE5 3571 aa4.01□□□□□ -1.77
SHROOM4-203ENST00000460112 ALMS1Q8TCU4 4167 aa3.97□□□□□ -1.77
SHROOM4-203ENST00000460112 KRTAP19-4Q3LI73 84 aa3.96□□□□□ -1.78
SHROOM4-203ENST00000460112 CSMD3Q7Z407 3707 aa3.95□□□□□ -1.78
SHROOM4-203ENST00000460112 CRCT1Q9UGL9 99 aa3.95□□□□□ -1.78
SHROOM4-203ENST00000460112 KRTAP12-3P60328 96 aa3.94□□□□□ -1.78
SHROOM4-203ENST00000460112 KRTAP3-2Q9BYR7 98 aa3.93□□□□□ -1.78
SHROOM4-203ENST00000460112 KRTAP3-3Q9BYR6 98 aa3.9□□□□□ -1.79
SHROOM4-203ENST00000460112 BSNQ9UPA5 3926 aa3.89□□□□□ -1.79
SHROOM4-203ENST00000460112 MT1HL1P0DM35 61 aa3.82□□□□□ -1.8
SHROOM4-203ENST00000460112 CSMD2Q7Z408 3487 aa3.79□□□□□ -1.8
SHROOM4-203ENST00000460112 KRTAP8-1Q8IUC2 63 aa3.79□□□□□ -1.8
SHROOM4-203ENST00000460112 LCE3AQ5TA76 89 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms