RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 JMJD7-PLA2G4BH0Y9G9 81 aa9.13□□□□□ -0.95
MSH6-207ENST00000456246 SMIM6P0DI80 62 aa9.13□□□□□ -0.95
MSH6-207ENST00000456246 NOTCH2NLQ7Z3S9 236 aa9.13□□□□□ -0.95
MSH6-207ENST00000456246 CRCT1Q9UGL9 99 aa9.13□□□□□ -0.95
MSH6-207ENST00000456246 A0A1B0GW54 56 aa9.11□□□□□ -0.95
MSH6-207ENST00000456246 FSIP2Q5CZC0 6907 aa9.11□□□□□ -0.95
MSH6-207ENST00000456246 LYRM7Q5U5X0 104 aa9.1□□□□□ -0.95
MSH6-207ENST00000456246 Q6ZQT0 140 aa9.09□□□□□ -0.95
MSH6-207ENST00000456246 PDE6GP18545 87 aa9.08□□□□□ -0.96
MSH6-207ENST00000456246 LOC110117498A0A087WWA1 95 aa9.06□□□□□ -0.96
MSH6-207ENST00000456246 NDUFB1O75438 58 aa9.06□□□□□ -0.96
MSH6-207ENST00000456246 NAA38Q9BRA0 125 aaKnown RBP9.05□□□□□ -0.96
MSH6-207ENST00000456246 RBM12B-AS1Q9P1G2 102 aa9.05□□□□□ -0.96
MSH6-207ENST00000456246 FAM236DA0A1B0GTK5 79 aa9.04□□□□□ -0.96
MSH6-207ENST00000456246 FAM236CP0DP71 79 aa9.04□□□□□ -0.96
MSH6-207ENST00000456246 TSTD3H0UI37 97 aa9.03□□□□□ -0.96
MSH6-207ENST00000456246 HRES1P13985 223 aa9□□□□□ -0.97
MSH6-207ENST00000456246 MPLKIPQ8TAP9 179 aa9□□□□□ -0.97
MSH6-207ENST00000456246 A8MWP4 228 aa8.99□□□□□ -0.97
MSH6-207ENST00000456246 ZCCHC13Q8WW36 166 aaKnown RBP8.99□□□□□ -0.97
MSH6-207ENST00000456246 C14orf132Q9NPU4 83 aa8.97□□□□□ -0.97
MSH6-207ENST00000456246 Q8N9P0 234 aaPredicted RBP8.96□□□□□ -0.98
MSH6-207ENST00000456246 MTURNQ8N3F0 131 aa8.95□□□□□ -0.98
MSH6-207ENST00000456246 BATFQ16520 125 aa8.94□□□□□ -0.98
MSH6-207ENST00000456246 C8orf17Q9NRJ1 99 aa8.94□□□□□ -0.98
MSH6-207ENST00000456246 KRTAP9-8Q9BYQ0 159 aa8.93□□□□□ -0.98
MSH6-207ENST00000456246 NREPQ16612 68 aa8.92□□□□□ -0.98
MSH6-207ENST00000456246 IGKV3D-7A0A0C4DH55 119 aa8.91□□□□□ -0.98
MSH6-207ENST00000456246 H3BT86 120 aa8.9□□□□□ -0.98
MSH6-207ENST00000456246 SPINK7P58062 85 aa8.9□□□□□ -0.98
MSH6-207ENST00000456246 C9orf118A6NHY6 69 aa8.89□□□□□ -0.99
MSH6-207ENST00000456246 PRR15Q8IV56 129 aa8.89□□□□□ -0.99
MSH6-207ENST00000456246 Q6ZVQ6 151 aa8.88□□□□□ -0.99
MSH6-207ENST00000456246 A0A1W2PPM0 123 aa8.85□□□□□ -0.99
MSH6-207ENST00000456246 TAX1BP3O14907 124 aa8.83□□□□□ -1
MSH6-207ENST00000456246 TMEM254Q8TBM7 123 aa8.82□□□□□ -1
MSH6-207ENST00000456246 MRPL34Q9BQ48 92 aaKnown RBP8.81□□□□□ -1
MSH6-207ENST00000456246 MMP24-AS1A0A0U1RRL7 71 aa8.8□□□□□ -1
MSH6-207ENST00000456246 LOC105371267A0A1B0GV96 52 aa8.8□□□□□ -1
MSH6-207ENST00000456246 MT2AP02795 61 aa8.8□□□□□ -1
MSH6-207ENST00000456246 WFDC13Q8IUB5 93 aa8.78□□□□□ -1
MSH6-207ENST00000456246 hDV103S1A0JD37 113 aa8.77□□□□□ -1.01
MSH6-207ENST00000456246 K7EQZ3 153 aa8.76□□□□□ -1.01
MSH6-207ENST00000456246 BPY2O14599 106 aa8.76□□□□□ -1.01
MSH6-207ENST00000456246 SPCS1Q9Y6A9 102 aa8.73□□□□□ -1.01
MSH6-207ENST00000456246 NDUFS5O43920 106 aa8.72□□□□□ -1.01
MSH6-207ENST00000456246 MT1FP04733 61 aa8.72□□□□□ -1.01
MSH6-207ENST00000456246 KRTAP10-10P60014 251 aa8.71□□□□□ -1.02
MSH6-207ENST00000456246 COL5A1-AS1Q5SY13 56 aa8.65□□□□□ -1.02
MSH6-207ENST00000456246 KRTAP9-3Q9BYQ3 159 aa8.65□□□□□ -1.02
MSH6-207ENST00000456246 USH2AO75445 5202 aa8.63□□□□□ -1.03
MSH6-207ENST00000456246 SMCPP49901 116 aaPredicted RBP8.63□□□□□ -1.03
MSH6-207ENST00000456246 CASC2Q6XLA1 102 aa8.63□□□□□ -1.03
MSH6-207ENST00000456246 C7orf65Q6ZTY9 151 aa8.63□□□□□ -1.03
MSH6-207ENST00000456246 H1FX-AS1Q4G0G2 97 aa8.61□□□□□ -1.03
MSH6-207ENST00000456246 UBL5Q9BZL1 73 aa8.61□□□□□ -1.03
MSH6-207ENST00000456246 IGKV2D-30A0A075B6S6 120 aa8.59□□□□□ -1.03
MSH6-207ENST00000456246 LCE2BO14633 110 aa8.59□□□□□ -1.03
MSH6-207ENST00000456246 IGKV2-30P06310 120 aa8.59□□□□□ -1.03
MSH6-207ENST00000456246 Q8N9L7 120 aa8.59□□□□□ -1.03
MSH6-207ENST00000456246 HCG22E2RYF7 251 aa8.58□□□□□ -1.04
MSH6-207ENST00000456246 SSPOA2VEC9 5147 aa8.57□□□□□ -1.04
MSH6-207ENST00000456246 K7EP34 96 aa8.57□□□□□ -1.04
MSH6-207ENST00000456246 CXCL6P80162 114 aa8.57□□□□□ -1.04
MSH6-207ENST00000456246 Q5W150 140 aa8.57□□□□□ -1.04
MSH6-207ENST00000456246 PRO0461Q9UI25 63 aa8.57□□□□□ -1.04
MSH6-207ENST00000456246 LINC00846Q9NV44 126 aa8.55□□□□□ -1.04
MSH6-207ENST00000456246 GTF2H5Q6ZYL4 71 aa8.5□□□□□ -1.05
MSH6-207ENST00000456246 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.49□□□□□ -1.05
MSH6-207ENST00000456246 KRTAP19-1Q8IUB9 90 aa8.47□□□□□ -1.05
MSH6-207ENST00000456246 F8W1H4 67 aa8.44□□□□□ -1.06
MSH6-207ENST00000456246 C4orf26Q17RF5 130 aa8.43□□□□□ -1.06
MSH6-207ENST00000456246 TP53AIP1Q9HCN2 124 aa8.41□□□□□ -1.06
MSH6-207ENST00000456246 FCGBPQ9Y6R7 5405 aaPredicted RBP8.41□□□□□ -1.06
MSH6-207ENST00000456246 KRTAP9-7A8MTY7 169 aa8.4□□□□□ -1.06
MSH6-207ENST00000456246 ETDBQ3ZM63 59 aa8.37□□□□□ -1.07
MSH6-207ENST00000456246 KRTAP19-6Q3LI70 58 aa8.35□□□□□ -1.07
MSH6-207ENST00000456246 PCP4L1A6NKN8 68 aa8.32□□□□□ -1.08
MSH6-207ENST00000456246 C1orf64Q8NEQ6 169 aa8.29□□□□□ -1.08
MSH6-207ENST00000456246 S4R3F8 94 aa8.29□□□□□ -1.08
MSH6-207ENST00000456246 C5orf47Q569G3 176 aa8.28□□□□□ -1.08
MSH6-207ENST00000456246 ACYP1P07311 99 aa8.27□□□□□ -1.09
MSH6-207ENST00000456246 KRTAP3-1Q9BYR8 98 aa8.27□□□□□ -1.09
MSH6-207ENST00000456246 CSAG1Q6PB30 78 aa8.25□□□□□ -1.09
MSH6-207ENST00000456246 FAM236AA0A1B0GUQ0 79 aa8.22□□□□□ -1.09
MSH6-207ENST00000456246 FAM236BA0A1B0GV22 79 aa8.22□□□□□ -1.09
MSH6-207ENST00000456246 FAM240AA0A1B0GVK7 77 aa8.22□□□□□ -1.09
MSH6-207ENST00000456246 ATP5EP2Q5VTU8 51 aa8.21□□□□□ -1.1
MSH6-207ENST00000456246 TRAV22A0A0B4J277 110 aa8.2□□□□□ -1.1
MSH6-207ENST00000456246 LCA10Q71F78 164 aa8.2□□□□□ -1.1
MSH6-207ENST00000456246 MACF1Q9UPN3 7388 aaKnown RBP8.19□□□□□ -1.1
MSH6-207ENST00000456246 CYP4F30PQ9H0H9 118 aa8.19□□□□□ -1.1
MSH6-207ENST00000456246 LOC101927531A0A1B0GV80 90 aa8.18□□□□□ -1.1
MSH6-207ENST00000456246 UQCRQO14949 82 aa8.11□□□□□ -1.11
MSH6-207ENST00000456246 HIST1H4AP62805 103 aaKnown RBP8.11□□□□□ -1.11
MSH6-207ENST00000456246 ATOX1O00244 68 aa8.1□□□□□ -1.11
MSH6-207ENST00000456246 SPRR2GQ9BYE4 73 aa8.08□□□□□ -1.12
MSH6-207ENST00000456246 SYNE2Q8WXH0 6885 aaKnown RBP8.07□□□□□ -1.12
MSH6-207ENST00000456246 KLKP1Q107X0 134 aa8.06□□□□□ -1.12
MSH6-207ENST00000456246 Q5VV11 94 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms