RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 TEN1Q86WV5 123 aa5□□□□□ -1.61
SYNE1-214ENST00000454018 DSCR8Q96T75 97 aa5□□□□□ -1.61
SYNE1-214ENST00000454018 NOTCH2NLQ7Z3S9 236 aa4.99□□□□□ -1.61
SYNE1-214ENST00000454018 OCR1Q9BZK8 76 aa4.99□□□□□ -1.61
SYNE1-214ENST00000454018 CCKP06307 115 aa4.97□□□□□ -1.61
SYNE1-214ENST00000454018 PDE6GP18545 87 aa4.97□□□□□ -1.61
SYNE1-214ENST00000454018 OBSCN-AS1Q96MR7 158 aa4.97□□□□□ -1.61
SYNE1-214ENST00000454018 RETNLBQ9BQ08 111 aa4.97□□□□□ -1.61
SYNE1-214ENST00000454018 SS18L2Q9UHA2 77 aa4.97□□□□□ -1.61
SYNE1-214ENST00000454018 HERC1Q15751 4861 aa4.97□□□□□ -1.61
SYNE1-214ENST00000454018 LOC110117498A0A087WWA1 95 aa4.97□□□□□ -1.61
SYNE1-214ENST00000454018 A0A1W2PNM2 257 aa4.97□□□□□ -1.61
SYNE1-214ENST00000454018 FP248Q71RG6 208 aaPredicted RBP4.97□□□□□ -1.61
SYNE1-214ENST00000454018 PRO0461Q9UI25 63 aa4.97□□□□□ -1.61
SYNE1-214ENST00000454018 ASB16-AS1Q495Z4 193 aa4.96□□□□□ -1.62
SYNE1-214ENST00000454018 C14orf132Q9NPU4 83 aa4.96□□□□□ -1.62
SYNE1-214ENST00000454018 A0A087WSZ3 146 aa4.95□□□□□ -1.62
SYNE1-214ENST00000454018 F8W1H4 67 aa4.95□□□□□ -1.62
SYNE1-214ENST00000454018 PRR4Q16378 134 aa4.95□□□□□ -1.62
SYNE1-214ENST00000454018 Q6ZQT0 140 aa4.95□□□□□ -1.62
SYNE1-214ENST00000454018 VPS25Q9BRG1 176 aa4.94□□□□□ -1.62
SYNE1-214ENST00000454018 A0A1B0GW54 56 aa4.93□□□□□ -1.62
SYNE1-214ENST00000454018 KRTAP9-3Q9BYQ3 159 aa4.92□□□□□ -1.62
SYNE1-214ENST00000454018 IGLV7-46A0A075B6I9 117 aa4.92□□□□□ -1.62
SYNE1-214ENST00000454018 A0A1B0GV90 55 aa4.92□□□□□ -1.62
SYNE1-214ENST00000454018 C1orf195Q5TG92 126 aa4.92□□□□□ -1.62
SYNE1-214ENST00000454018 TPRXLQ17RH7 258 aa4.91□□□□□ -1.62
SYNE1-214ENST00000454018 ETDBQ3ZM63 59 aa4.89□□□□□ -1.63
SYNE1-214ENST00000454018 LCE5AQ5TCM9 118 aa4.88□□□□□ -1.63
SYNE1-214ENST00000454018 Q96NJ1 140 aa4.87□□□□□ -1.63
SYNE1-214ENST00000454018 HMCN2Q8NDA2 5059 aa4.87□□□□□ -1.63
SYNE1-214ENST00000454018 KRTAP13-3Q3SY46 172 aa4.87□□□□□ -1.63
SYNE1-214ENST00000454018 IGKV2D-30A0A075B6S6 120 aa4.86□□□□□ -1.63
SYNE1-214ENST00000454018 SIGMAR1Q99720 223 aa4.86□□□□□ -1.63
SYNE1-214ENST00000454018 LINC00472Q9H8W2 130 aa4.86□□□□□ -1.63
SYNE1-214ENST00000454018 J3KT08 172 aa4.84□□□□□ -1.63
SYNE1-214ENST00000454018 IGKV4-1P06312 121 aa4.84□□□□□ -1.63
SYNE1-214ENST00000454018 Q8N9P0 234 aaPredicted RBP4.83□□□□□ -1.64
SYNE1-214ENST00000454018 NREPQ16612 68 aa4.82□□□□□ -1.64
SYNE1-214ENST00000454018 C9orf92A6NGG3 77 aa4.81□□□□□ -1.64
SYNE1-214ENST00000454018 DEFB116Q30KQ4 102 aa4.81□□□□□ -1.64
SYNE1-214ENST00000454018 LRP2P98164 4655 aa4.8□□□□□ -1.64
SYNE1-214ENST00000454018 FAM240AA0A1B0GVK7 77 aa4.8□□□□□ -1.64
SYNE1-214ENST00000454018 UBL5Q9BZL1 73 aa4.8□□□□□ -1.64
SYNE1-214ENST00000454018 LPAP08519 4548 aa4.8□□□□□ -1.64
SYNE1-214ENST00000454018 LINC00846Q9NV44 126 aa4.79□□□□□ -1.64
SYNE1-214ENST00000454018 A0A1B0GVX0 72 aa4.78□□□□□ -1.64
SYNE1-214ENST00000454018 A8MWP4 228 aa4.78□□□□□ -1.64
SYNE1-214ENST00000454018 NDUFB1O75438 58 aa4.78□□□□□ -1.64
SYNE1-214ENST00000454018 ACYP1P07311 99 aa4.78□□□□□ -1.64
SYNE1-214ENST00000454018 BPY2O14599 106 aa4.77□□□□□ -1.65
SYNE1-214ENST00000454018 IGHV6-1A0A0B4J1U7 121 aa4.77□□□□□ -1.65
SYNE1-214ENST00000454018 C8orf87E5RJ46 101 aa4.77□□□□□ -1.65
SYNE1-214ENST00000454018 LINC00313P59037 77 aa4.76□□□□□ -1.65
SYNE1-214ENST00000454018 CXCL6P80162 114 aa4.76□□□□□ -1.65
SYNE1-214ENST00000454018 J3QR89 54 aa4.75□□□□□ -1.65
SYNE1-214ENST00000454018 DSCR10P59022 87 aa4.75□□□□□ -1.65
SYNE1-214ENST00000454018 IGKV3D-7A0A0C4DH55 119 aa4.74□□□□□ -1.65
SYNE1-214ENST00000454018 PRR15Q8IV56 129 aa4.74□□□□□ -1.65
SYNE1-214ENST00000454018 RPL37P61927 97 aaKnown RBP4.73□□□□□ -1.65
SYNE1-214ENST00000454018 K7EQZ3 153 aa4.72□□□□□ -1.65
SYNE1-214ENST00000454018 C20orf166-AS1Q96NR2 134 aa4.72□□□□□ -1.65
SYNE1-214ENST00000454018 UBR4Q5T4S7 5183 aa4.72□□□□□ -1.65
SYNE1-214ENST00000454018 KRTAP16-1A8MUX0 517 aa4.72□□□□□ -1.65
SYNE1-214ENST00000454018 ATP5EP2Q5VTU8 51 aa4.72□□□□□ -1.65
SYNE1-214ENST00000454018 C8orf17Q9NRJ1 99 aa4.72□□□□□ -1.65
SYNE1-214ENST00000454018 A8MUU9 505 aa4.7□□□□□ -1.66
SYNE1-214ENST00000454018 MMP24-AS1A0A0U1RRL7 71 aa4.69□□□□□ -1.66
SYNE1-214ENST00000454018 Q8N9L7 120 aa4.69□□□□□ -1.66
SYNE1-214ENST00000454018 hDV103S1A0JD37 113 aa4.67□□□□□ -1.66
SYNE1-214ENST00000454018 K7ERU9 68 aa4.67□□□□□ -1.66
SYNE1-214ENST00000454018 PCOTHQ58A44 107 aa4.67□□□□□ -1.66
SYNE1-214ENST00000454018 ATP11AUNQ6ZP68 121 aa4.67□□□□□ -1.66
SYNE1-214ENST00000454018 LINC00643Q86TS7 51 aa4.67□□□□□ -1.66
SYNE1-214ENST00000454018 TMEM254Q8TBM7 123 aa4.67□□□□□ -1.66
SYNE1-214ENST00000454018 V9GYY9 64 aa4.67□□□□□ -1.66
SYNE1-214ENST00000454018 NDUFAF8A1L188 74 aa4.66□□□□□ -1.66
SYNE1-214ENST00000454018 MRPL34Q9BQ48 92 aaKnown RBP4.66□□□□□ -1.66
SYNE1-214ENST00000454018 HCG22E2RYF7 251 aa4.65□□□□□ -1.67
SYNE1-214ENST00000454018 CASC2Q6XLA1 102 aa4.65□□□□□ -1.67
SYNE1-214ENST00000454018 MUC17Q685J3 4493 aa4.65□□□□□ -1.67
SYNE1-214ENST00000454018 WFDC13Q8IUB5 93 aa4.64□□□□□ -1.67
SYNE1-214ENST00000454018 NDUFS5O43920 106 aa4.61□□□□□ -1.67
SYNE1-214ENST00000454018 HIST1H4AP62805 103 aaKnown RBP4.61□□□□□ -1.67
SYNE1-214ENST00000454018 ZCCHC13Q8WW36 166 aaKnown RBP4.61□□□□□ -1.67
SYNE1-214ENST00000454018 RNF213Q63HN8 5207 aa4.6□□□□□ -1.67
SYNE1-214ENST00000454018 KRTAP4-1Q9BYQ7 146 aa4.59□□□□□ -1.67
SYNE1-214ENST00000454018 A0A0U1RQV1 116 aa4.57□□□□□ -1.68
SYNE1-214ENST00000454018 MUC2Q02817 5179 aa4.56□□□□□ -1.68
SYNE1-214ENST00000454018 A0A087WVE0 104 aa4.56□□□□□ -1.68
SYNE1-214ENST00000454018 TP53AIP1Q9HCN2 124 aa4.56□□□□□ -1.68
SYNE1-214ENST00000454018 C5orf47Q569G3 176 aa4.54□□□□□ -1.68
SYNE1-214ENST00000454018 IMUPQ9GZP8 106 aa4.54□□□□□ -1.68
SYNE1-214ENST00000454018 MT-ATP8P03928 68 aa4.52□□□□□ -1.69
SYNE1-214ENST00000454018 Q5W150 140 aa4.51□□□□□ -1.69
SYNE1-214ENST00000454018 SPINK7P58062 85 aa4.51□□□□□ -1.69
SYNE1-214ENST00000454018 C7orf65Q6ZTY9 151 aa4.5□□□□□ -1.69
SYNE1-214ENST00000454018 TRAV22A0A0B4J277 110 aa4.49□□□□□ -1.69
SYNE1-214ENST00000454018 UQCRQO14949 82 aa4.48□□□□□ -1.69
SYNE1-214ENST00000454018 HRES1P13985 223 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms