RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 KRTAP19-1Q8IUB9 90 aa6.43□□□□□ -1.38
SCN9A-204ENST00000452182 LPAP08519 4548 aa6.41□□□□□ -1.38
SCN9A-204ENST00000452182 J3KT08 172 aa6.41□□□□□ -1.38
SCN9A-204ENST00000452182 NREPQ16612 68 aa6.41□□□□□ -1.38
SCN9A-204ENST00000452182 IGKV4-1P06312 121 aa6.4□□□□□ -1.38
SCN9A-204ENST00000452182 KRTAP4-8Q9BYQ9 185 aa6.39□□□□□ -1.39
SCN9A-204ENST00000452182 LRP2P98164 4655 aa6.38□□□□□ -1.39
SCN9A-204ENST00000452182 DEFB116Q30KQ4 102 aa6.38□□□□□ -1.39
SCN9A-204ENST00000452182 SIGMAR1Q99720 223 aa6.38□□□□□ -1.39
SCN9A-204ENST00000452182 LINC00846Q9NV44 126 aa6.38□□□□□ -1.39
SCN9A-204ENST00000452182 FAM240AA0A1B0GVK7 77 aa6.37□□□□□ -1.39
SCN9A-204ENST00000452182 ACYP1P07311 99 aa6.37□□□□□ -1.39
SCN9A-204ENST00000452182 Q6ZVQ6 151 aa6.37□□□□□ -1.39
SCN9A-204ENST00000452182 KRTAP4-12Q9BQ66 201 aa6.36□□□□□ -1.39
SCN9A-204ENST00000452182 UBL5Q9BZL1 73 aa6.36□□□□□ -1.39
SCN9A-204ENST00000452182 PCP4P48539 62 aa6.35□□□□□ -1.39
SCN9A-204ENST00000452182 C9orf92A6NGG3 77 aa6.34□□□□□ -1.39
SCN9A-204ENST00000452182 A0A1B0GVX0 72 aa6.33□□□□□ -1.4
SCN9A-204ENST00000452182 A8MWP4 228 aa6.33□□□□□ -1.4
SCN9A-204ENST00000452182 BPY2O14599 106 aa6.32□□□□□ -1.4
SCN9A-204ENST00000452182 NDUFB1O75438 58 aa6.32□□□□□ -1.4
SCN9A-204ENST00000452182 DSCR10P59022 87 aa6.32□□□□□ -1.4
SCN9A-204ENST00000452182 J3QR89 54 aa6.31□□□□□ -1.4
SCN9A-204ENST00000452182 IGHV6-1A0A0B4J1U7 121 aa6.3□□□□□ -1.4
SCN9A-204ENST00000452182 C8orf87E5RJ46 101 aa6.3□□□□□ -1.4
SCN9A-204ENST00000452182 LINC00313P59037 77 aa6.3□□□□□ -1.4
SCN9A-204ENST00000452182 IGKV3D-7A0A0C4DH55 119 aa6.29□□□□□ -1.4
SCN9A-204ENST00000452182 PRR15Q8IV56 129 aa6.29□□□□□ -1.4
SCN9A-204ENST00000452182 UBR4Q5T4S7 5183 aa6.29□□□□□ -1.4
SCN9A-204ENST00000452182 CXCL6P80162 114 aa6.27□□□□□ -1.41
SCN9A-204ENST00000452182 NOTCH2NLQ7Z3S9 236 aa6.27□□□□□ -1.41
SCN9A-204ENST00000452182 KRTAP16-1A8MUX0 517 aa6.26□□□□□ -1.41
SCN9A-204ENST00000452182 K7EQZ3 153 aa6.26□□□□□ -1.41
SCN9A-204ENST00000452182 KRTAP9-2Q9BYQ4 174 aa6.25□□□□□ -1.41
SCN9A-204ENST00000452182 RPL37P61927 97 aaKnown RBP6.25□□□□□ -1.41
SCN9A-204ENST00000452182 Q75L30 129 aa6.25□□□□□ -1.41
SCN9A-204ENST00000452182 C20orf166-AS1Q96NR2 134 aa6.25□□□□□ -1.41
SCN9A-204ENST00000452182 C8orf17Q9NRJ1 99 aa6.25□□□□□ -1.41
SCN9A-204ENST00000452182 SEC61BP60468 96 aaKnown RBP6.24□□□□□ -1.41
SCN9A-204ENST00000452182 ATP5EP2Q5VTU8 51 aa6.24□□□□□ -1.41
SCN9A-204ENST00000452182 A8MUU9 505 aa6.23□□□□□ -1.41
SCN9A-204ENST00000452182 MUC17Q685J3 4493 aa6.23□□□□□ -1.41
SCN9A-204ENST00000452182 K7ERU9 68 aa6.22□□□□□ -1.41
SCN9A-204ENST00000452182 LINC00643Q86TS7 51 aa6.22□□□□□ -1.41
SCN9A-204ENST00000452182 Q8N9L7 120 aa6.22□□□□□ -1.41
SCN9A-204ENST00000452182 MMP24-AS1A0A0U1RRL7 71 aa6.21□□□□□ -1.41
SCN9A-204ENST00000452182 KRTAP9-6A0A140TA67 174 aa6.19□□□□□ -1.42
SCN9A-204ENST00000452182 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.19□□□□□ -1.42
SCN9A-204ENST00000452182 Q8N9P0 234 aaPredicted RBP6.19□□□□□ -1.42
SCN9A-204ENST00000452182 TMEM254Q8TBM7 123 aa6.19□□□□□ -1.42
SCN9A-204ENST00000452182 hDV103S1A0JD37 113 aa6.18□□□□□ -1.42
SCN9A-204ENST00000452182 PCOTHQ58A44 107 aa6.17□□□□□ -1.42
SCN9A-204ENST00000452182 ATP11AUNQ6ZP68 121 aa6.17□□□□□ -1.42
SCN9A-204ENST00000452182 MRPL34Q9BQ48 92 aaKnown RBP6.17□□□□□ -1.42
SCN9A-204ENST00000452182 RNF213Q63HN8 5207 aa6.17□□□□□ -1.42
SCN9A-204ENST00000452182 HCG22E2RYF7 251 aa6.16□□□□□ -1.42
SCN9A-204ENST00000452182 CASC2Q6XLA1 102 aa6.16□□□□□ -1.42
SCN9A-204ENST00000452182 KRTAP9-7A8MTY7 169 aa6.15□□□□□ -1.42
SCN9A-204ENST00000452182 LCE4AQ5TA78 99 aa6.15□□□□□ -1.42
SCN9A-204ENST00000452182 LCE3BQ5TA77 95 aa6.14□□□□□ -1.43
SCN9A-204ENST00000452182 WFDC13Q8IUB5 93 aa6.14□□□□□ -1.43
SCN9A-204ENST00000452182 MUC2Q02817 5179 aa6.13□□□□□ -1.43
SCN9A-204ENST00000452182 HIST1H4AP62805 103 aaKnown RBP6.11□□□□□ -1.43
SCN9A-204ENST00000452182 ZCCHC13Q8WW36 166 aaKnown RBP6.1□□□□□ -1.43
SCN9A-204ENST00000452182 KRTAP4-1Q9BYQ7 146 aa6.09□□□□□ -1.43
SCN9A-204ENST00000452182 NDUFS5O43920 106 aa6.08□□□□□ -1.44
SCN9A-204ENST00000452182 A0A087WVE0 104 aa6.07□□□□□ -1.44
SCN9A-204ENST00000452182 IMUPQ9GZP8 106 aa6.07□□□□□ -1.44
SCN9A-204ENST00000452182 TP53AIP1Q9HCN2 124 aa6.05□□□□□ -1.44
SCN9A-204ENST00000452182 MT-ATP8P03928 68 aa6.03□□□□□ -1.44
SCN9A-204ENST00000452182 A0A0A0MQY5 61 aa6.01□□□□□ -1.45
SCN9A-204ENST00000452182 Q5W150 140 aa6.01□□□□□ -1.45
SCN9A-204ENST00000452182 SPINK7P58062 85 aa5.98□□□□□ -1.45
SCN9A-204ENST00000452182 A0A0U1RQV1 116 aa5.96□□□□□ -1.45
SCN9A-204ENST00000452182 UQCRQO14949 82 aa5.96□□□□□ -1.46
SCN9A-204ENST00000452182 KRTAP9-9Q9BYP9 154 aa5.94□□□□□ -1.46
SCN9A-204ENST00000452182 KRTAP9-4Q9BYQ2 154 aa5.94□□□□□ -1.46
SCN9A-204ENST00000452182 OCR1Q9BZK8 76 aa5.94□□□□□ -1.46
SCN9A-204ENST00000452182 TRAV22A0A0B4J277 110 aa5.93□□□□□ -1.46
SCN9A-204ENST00000452182 HRES1P13985 223 aa5.93□□□□□ -1.46
SCN9A-204ENST00000452182 C7orf65Q6ZTY9 151 aa5.93□□□□□ -1.46
SCN9A-204ENST00000452182 SCGB1A1P11684 91 aa5.92□□□□□ -1.46
SCN9A-204ENST00000452182 KRTAP19-2Q3LHN2 52 aa5.92□□□□□ -1.46
SCN9A-204ENST00000452182 MPLKIPQ8TAP9 179 aa5.92□□□□□ -1.46
SCN9A-204ENST00000452182 KRTAP15-1Q3LI76 137 aa5.92□□□□□ -1.46
SCN9A-204ENST00000452182 KRTAP9-3Q9BYQ3 159 aa5.92□□□□□ -1.46
SCN9A-204ENST00000452182 FAT4Q6V0I7 4981 aa5.91□□□□□ -1.46
SCN9A-204ENST00000452182 FAM236AA0A1B0GUQ0 79 aa5.91□□□□□ -1.46
SCN9A-204ENST00000452182 FAM236BA0A1B0GV22 79 aa5.91□□□□□ -1.46
SCN9A-204ENST00000452182 IGKV2D-30A0A075B6S6 120 aa5.9□□□□□ -1.46
SCN9A-204ENST00000452182 IGKV2-30P06310 120 aa5.9□□□□□ -1.46
SCN9A-204ENST00000452182 ATOX1O00244 68 aa5.89□□□□□ -1.47
SCN9A-204ENST00000452182 SMIM20Q8N5G0 67 aa5.88□□□□□ -1.47
SCN9A-204ENST00000452182 C5orf47Q569G3 176 aa5.88□□□□□ -1.47
SCN9A-204ENST00000452182 RBM12B-AS1Q9P1G2 102 aa5.88□□□□□ -1.47
SCN9A-204ENST00000452182 LOC101927531A0A1B0GV80 90 aa5.87□□□□□ -1.47
SCN9A-204ENST00000452182 H0Y9P7 68 aa5.87□□□□□ -1.47
SCN9A-204ENST00000452182 MP68P56378 58 aa5.85□□□□□ -1.47
SCN9A-204ENST00000452182 COX6B2Q6YFQ2 88 aa5.85□□□□□ -1.47
SCN9A-204ENST00000452182 CYP4F30PQ9H0H9 118 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms