RNA–Protein interactions for RNA: ENST00000449234.1

RFX3-208, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 633 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-208ENST00000449234 LCE1DQ5T752 114 aa6.84□□□□□ -1.31
RFX3-208ENST00000449234 LIMD2Q9BT23 127 aa6.84□□□□□ -1.31
RFX3-208ENST00000449234 C8orf87E5RJ46 101 aa6.83□□□□□ -1.32
RFX3-208ENST00000449234 VPS13DQ5THJ4 4388 aa6.81□□□□□ -1.32
RFX3-208ENST00000449234 IGHV6-1A0A0B4J1U7 121 aa6.81□□□□□ -1.32
RFX3-208ENST00000449234 COL7A1Q02388 2944 aa6.79□□□□□ -1.32
RFX3-208ENST00000449234 LOC101927531A0A1B0GV80 90 aa6.79□□□□□ -1.32
RFX3-208ENST00000449234 PRR4Q16378 134 aa6.79□□□□□ -1.32
RFX3-208ENST00000449234 BRK1Q8WUW1 75 aa6.79□□□□□ -1.32
RFX3-208ENST00000449234 DNAH10Q8IVF4 4471 aa6.78□□□□□ -1.32
RFX3-208ENST00000449234 Q8N9P0 234 aaPredicted RBP6.78□□□□□ -1.32
RFX3-208ENST00000449234 PLECQ15149 4684 aaKnown RBP6.76□□□□□ -1.33
RFX3-208ENST00000449234 NDUFS5O43920 106 aa6.75□□□□□ -1.33
RFX3-208ENST00000449234 COA5Q86WW8 74 aa6.75□□□□□ -1.33
RFX3-208ENST00000449234 LCE4AQ5TA78 99 aa6.74□□□□□ -1.33
RFX3-208ENST00000449234 KRTAP4-7Q9BYR0 210 aa6.74□□□□□ -1.33
RFX3-208ENST00000449234 ANAPC11Q9NYG5 84 aa6.73□□□□□ -1.33
RFX3-208ENST00000449234 LY6G6CO95867 125 aa6.72□□□□□ -1.33
RFX3-208ENST00000449234 Q6ZSA8 131 aa6.72□□□□□ -1.33
RFX3-208ENST00000449234 CIRBP-AS1Q8TBR5 109 aa6.72□□□□□ -1.33
RFX3-208ENST00000449234 DNAH17Q9UFH2 4485 aa6.71□□□□□ -1.33
RFX3-208ENST00000449234 KRTAP13-3Q3SY46 172 aa6.71□□□□□ -1.34
RFX3-208ENST00000449234 DNAH7Q8WXX0 4024 aa6.7□□□□□ -1.34
RFX3-208ENST00000449234 A8MUN3 132 aa6.7□□□□□ -1.34
RFX3-208ENST00000449234 PSPHP1O15172 72 aa6.7□□□□□ -1.34
RFX3-208ENST00000449234 PCOTHQ58A44 107 aa6.7□□□□□ -1.34
RFX3-208ENST00000449234 Q5VV11 94 aa6.7□□□□□ -1.34
RFX3-208ENST00000449234 LINC01558Q9Y6Z2 57 aa6.7□□□□□ -1.34
RFX3-208ENST00000449234 LINC00313P59037 77 aa6.69□□□□□ -1.34
RFX3-208ENST00000449234 A0A087X002 238 aa6.68□□□□□ -1.34
RFX3-208ENST00000449234 Q75L30 129 aa6.68□□□□□ -1.34
RFX3-208ENST00000449234 NOTCH2NLQ7Z3S9 236 aa6.68□□□□□ -1.34
RFX3-208ENST00000449234 LYSTQ99698 3801 aa6.68□□□□□ -1.34
RFX3-208ENST00000449234 SRRM2Q9UQ35 2752 aaKnown RBP6.67□□□□□ -1.34
RFX3-208ENST00000449234 CSMD3Q7Z407 3707 aa6.66□□□□□ -1.34
RFX3-208ENST00000449234 SPINK6Q6UWN8 80 aa6.66□□□□□ -1.34
RFX3-208ENST00000449234 DNAH6Q9C0G6 4158 aa6.66□□□□□ -1.34
RFX3-208ENST00000449234 KRTAP9-7A8MTY7 169 aa6.65□□□□□ -1.34
RFX3-208ENST00000449234 HRES1P13985 223 aa6.65□□□□□ -1.34
RFX3-208ENST00000449234 ACYP2P14621 99 aa6.65□□□□□ -1.34
RFX3-208ENST00000449234 HECTD4Q9Y4D8 3996 aa6.65□□□□□ -1.35
RFX3-208ENST00000449234 TENM2Q9NT68 2774 aa6.64□□□□□ -1.35
RFX3-208ENST00000449234 KRTAP10-2P60368 255 aa6.64□□□□□ -1.35
RFX3-208ENST00000449234 Q5W150 140 aa6.64□□□□□ -1.35
RFX3-208ENST00000449234 PRR15LQ9BU68 103 aa6.64□□□□□ -1.35
RFX3-208ENST00000449234 CHKB-CPT1BH3BT56 60 aa6.63□□□□□ -1.35
RFX3-208ENST00000449234 KRTAP4-9Q9BYQ8 210 aa6.63□□□□□ -1.35
RFX3-208ENST00000449234 PRKDCP78527 4128 aaKnown RBP6.63□□□□□ -1.35
RFX3-208ENST00000449234 KRTAP13-2Q52LG2 175 aa6.62□□□□□ -1.35
RFX3-208ENST00000449234 STARD9Q9P2P6 4700 aa6.61□□□□□ -1.35
RFX3-208ENST00000449234 DNAH2Q9P225 4427 aa6.61□□□□□ -1.35
RFX3-208ENST00000449234 KRTAP10-1P60331 282 aa6.6□□□□□ -1.35
RFX3-208ENST00000449234 KRTAP21-3Q3LHN1 58 aa6.6□□□□□ -1.35
RFX3-208ENST00000449234 RPS29P62273 56 aaKnown RBP6.59□□□□□ -1.35
RFX3-208ENST00000449234 SPINK1P00995 79 aa6.58□□□□□ -1.36
RFX3-208ENST00000449234 IGKV2-30P06310 120 aa6.58□□□□□ -1.36
RFX3-208ENST00000449234 ATP11AUNQ6ZP68 121 aa6.58□□□□□ -1.36
RFX3-208ENST00000449234 PRR26Q8N8Z3 221 aa6.58□□□□□ -1.36
RFX3-208ENST00000449234 DMAC1Q96GE9 116 aa6.58□□□□□ -1.36
RFX3-208ENST00000449234 KRTAP1-4P0C5Y4 121 aa6.57□□□□□ -1.36
RFX3-208ENST00000449234 DNAH8Q96JB1 4490 aa6.56□□□□□ -1.36
RFX3-208ENST00000449234 KRTAP16-1A8MUX0 517 aa6.56□□□□□ -1.36
RFX3-208ENST00000449234 SPAG11AQ6PDA7 123 aa6.56□□□□□ -1.36
RFX3-208ENST00000449234 CDC42SE1Q9NRR8 79 aa6.56□□□□□ -1.36
RFX3-208ENST00000449234 A6NED7 52 aa6.53□□□□□ -1.36
RFX3-208ENST00000449234 PMAIP1Q13794 54 aa6.53□□□□□ -1.36
RFX3-208ENST00000449234 PLA2G1BP04054 148 aaKnown RBP6.52□□□□□ -1.37
RFX3-208ENST00000449234 TYMSOSQ8TAI1 123 aa6.52□□□□□ -1.37
RFX3-208ENST00000449234 ALMS1Q8TCU4 4167 aa6.5□□□□□ -1.37
RFX3-208ENST00000449234 LCA10Q71F78 164 aa6.5□□□□□ -1.37
RFX3-208ENST00000449234 FBN3Q75N90 2809 aa6.49□□□□□ -1.37
RFX3-208ENST00000449234 MEGF8Q7Z7M0 2845 aa6.49□□□□□ -1.37
RFX3-208ENST00000449234 LCE5AQ5TCM9 118 aa6.45□□□□□ -1.38
RFX3-208ENST00000449234 KRTAP9-3Q9BYQ3 159 aa6.45□□□□□ -1.38
RFX3-208ENST00000449234 TGP01266 2768 aa6.44□□□□□ -1.38
RFX3-208ENST00000449234 LINC00304Q8N9R0 145 aa6.44□□□□□ -1.38
RFX3-208ENST00000449234 DNAH11Q96DT5 4516 aa6.44□□□□□ -1.38
RFX3-208ENST00000449234 KMT2AQ03164 3969 aa6.43□□□□□ -1.38
RFX3-208ENST00000449234 IGKV2D-30A0A075B6S6 120 aa6.43□□□□□ -1.38
RFX3-208ENST00000449234 KRTAP4-2Q9BYR5 136 aa6.43□□□□□ -1.38
RFX3-208ENST00000449234 KRTAP4-11Q9BYQ6 195 aa6.41□□□□□ -1.38
RFX3-208ENST00000449234 DNAH5Q8TE73 4624 aa6.4□□□□□ -1.38
RFX3-208ENST00000449234 SPINK7P58062 85 aa6.4□□□□□ -1.38
RFX3-208ENST00000449234 C7orf65Q6ZTY9 151 aa6.4□□□□□ -1.38
RFX3-208ENST00000449234 A0A1B0GU69 56 aa6.39□□□□□ -1.39
RFX3-208ENST00000449234 A6NN06 94 aa6.39□□□□□ -1.39
RFX3-208ENST00000449234 SPTSSBQ8NFR3 76 aa6.39□□□□□ -1.39
RFX3-208ENST00000449234 A8MU10 97 aa6.38□□□□□ -1.39
RFX3-208ENST00000449234 KTN1-AS1Q86SY8 53 aa6.38□□□□□ -1.39
RFX3-208ENST00000449234 RETNLBQ9BQ08 111 aa6.38□□□□□ -1.39
RFX3-208ENST00000449234 FRAS1Q86XX4 4008 aa6.37□□□□□ -1.39
RFX3-208ENST00000449234 SPATA8Q6RVD6 105 aa6.36□□□□□ -1.39
RFX3-208ENST00000449234 PKD1P98161 4303 aa6.35□□□□□ -1.39
RFX3-208ENST00000449234 A8MUU9 505 aa6.35□□□□□ -1.39
RFX3-208ENST00000449234 C20orf166-AS1Q96NR2 134 aa6.34□□□□□ -1.39
RFX3-208ENST00000449234 UQCR11O14957 56 aa6.33□□□□□ -1.4
RFX3-208ENST00000449234 A0A1B0GVY2 172 aa6.32□□□□□ -1.4
RFX3-208ENST00000449234 SACSQ9NZJ4 4579 aa6.31□□□□□ -1.4
RFX3-208ENST00000449234 LRP1BQ9NZR2 4599 aa6.31□□□□□ -1.4
RFX3-208ENST00000449234 SEC61GP60059 68 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms